Sol Genomics Network

Unigene SGN-U268334

Unigene Basic Information

Unigene ID:	SGN-U268334
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	268334
mRNA sequence:	Length: 1115 bp

>SGN-U268334 Solanum tuberosum #4 (164 members)
CCGGTTACCTGCTTTACCCGGAACCTAATCCCTCATGCAATTTACAAATTTCACAATATAAATCCATGCAAAATTTTCCATAATTTCATC
ACTCCCCAACTTGCCCCTTAATAGTAACACTAGAGAAAATTTTCAATTGTTAATTTTCTGGTGAAAATGCCGATCAACCAAATTACTATT
GGAAGCCATGAGGAACTCCGCCATCCAGGGGCGCTTAAAGCGGCCTTGGCGGAGTTCATCAGTACTCTGATCTTCGTTTTCGCAGGTCAG
GGTTCTGGTATGGCTTTCAATAAGCTTACCGACGGTGTCGCTACTCCCGCTGGCCTTATTTCCGCCTCCATTGCGCACGCCTTCGGGTTG
TTCGTGGCCGTCTCTGTCGGTGCTAACATCTCCGGCGGCCACGTCAACCCGGCTGTTACTTTCGGTGCTTTTGTAGGTGGAAATATCACT
TTGTTCCGTGGGATTTTGTACATCATTGCACAGTTGCTTGGATCCACTGCTGCTTGCGCTCTCCTTGGATTCGCCACTGGTGGCATGAGC
ACTGGATCATTTGCATTGTCAGCCGGTGTATCAGTATGGAACGCATTTGTATTCGAGATAGTGATGACATTTGGTCTCGTTTACACTGTT
TACGCAACTGCAGTTGACCCAAAGAAGGGAGATTTGGGAGTGATTGCACCAATTGCAATTGGTTTCATTGTTGGTGCCAACATTCTAGCT
GGTGGAGCTTTTACTGGAGCTTCAATGAACCCAGCTGTGTCATTTGGCCCATCTTTGATTAGCTGGACCTGGACTCACCAATGGGTTTAC
TGGGCTGGACCACTTATTGGTGGTGGGCTTGCTGGATTTATCTATGAATTCATCTTCATTAGCCACACTCATGAGCAAATCCCAAGTGGA
GATTTTTAAGTAGTGTGACATTTTATCAACTTGTTGTTTAATTTTAATTTTCTCTTTGTAAACTTCTTTGTTTGTTTGTGTCTATGTTTA
ATGGGCACTGTTGAATTTGTACTTTGTGTATTCGGACGGCTTTTGCTATTTATTTTCTTTATTTTGCTCGTGGTAAATAAGGTATTTTGA
ATTTTTCAAAAAAAAAAAAAAAAAAAAAAACTCGA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
potrb7	membrane channel protein (potRB7)

Genomic locations (0)

None

Library representation (20)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	3
Solanum tuberosum	ACDC	Sprouting Tubers	5177	3
Solanum tuberosum	CSCH	Tubers	5038	14
Solanum tuberosum	IVROOT	Root	5850	6
Solanum tuberosum	MXFL	Floral buds	6603	6
Solanum tuberosum	MXLF	Leaves	6585	3
Solanum tuberosum	PPC	leaf 6 week old	5062	2
Solanum tuberosum	PPI	leaf 6-week old leaf	5434	1
Solanum tuberosum	STM	mixed tissues	14805	1
Solanum tuberosum	STOL	Stolon	6462	35
Solanum tuberosum	SWST	Stolon	5942	17
Solanum tuberosum	TBSK	Tuber Skin	4812	14
Solanum tuberosum	TUBS	Tubers	5976	4
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	8
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	12
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTC	sprouting eyes from tubers 12-14 weeks post harvest	870	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	6
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	13
Solanum tuberosum	cSTS	sprouting eyes from tubers 12-14 weeks post harvest	9230	14

mRNA member sequences (164)

Alignment image suppressed for unigene with 164 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 3 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	62	MIP	192
2	22002	MIP	174
5	56390	MIP	51
1.1	101425	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	199
2	118438	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	168
5	129060	Major intrinsic protein - Molecular Function: transporter activity (GO:0005215) - Biological Process: transport (GO:0006810) - Cellular Component: membrane (GO:0016020)	50

Preceding Unigenes (1)

Unigene	Build
SGN-U243305	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: