Sol Genomics Network

This unigene is from an out-of-date build, Lycopersicon Combined #3
It has been split into SGN-U577571, SGN-U577604, and SGN-U580949 in the current build, Tomato 200607 #2

Unigene SGN-U212832

Unigene Basic Information

Unigene ID:	SGN-U212832
Unigene Build:	Lycopersicon Combined #3
Date:	2004-06-30
Organism:	S.lycopersicum S.habrochaites S.pennellii
Alternative ID:	212832
mRNA sequence:	Length: 1268 bp

>SGN-U212832 Lycopersicon Combined #3 (87 members)
TTTCTAGTAATCTACTATTGTTCTCTACATTACAAGAATAACATCCCCATCCACTTCCTCTCTTCTCAACACACACATTAATTAACATGG
CTTCTTCCACTCTTTCTCATGTAACTCCTTCTCAGCTATGCTCAAGCAAAAGTGGTATTTCATCGGTTTCACAAGCCTTGCTTGTGAAGC
CGATGAAGATTAATGGTCATGGAATGGGAAAGGATAATAAGAGGATGAAAGTGAAATGTATGGCAGCTAGTATTCCAGCAGATGATAGAG
TGCCTGATATGGAGAAAAGGAATCTTATGAATTTGCTTTTATTGGGTGCACTTGCTTTACCAACTGGTGGAATGCTTGTACCTTATGCTA
CTTTCTTTGCACCTCCTGGCTCAGGAGGTGGTAGTGGTGGTACCCCTGCCAAAGATGCTAATGGCAATGATGTTGTTGTGACTGAATGGC
TCAAAACTCATGCACCTGGAACTCGAACCCTCACACAAGGACTAAAGGGAGATCCTACTTACCTTGTTGTGGAGAACGATGGAACACTCG
CGACCTATGGTATCAATGCTGTGTGCACTCACCTTGGTTGTGTCGTGCCGTGGAATACTGCTGAGAACAAGTTCATTTGCCCTTGCCATG
GATCTCAATACAACAATCAAGGAAAAGTTGTTAGAGGACCTGCTCCTTTATCCTTGGCATTGGCTCATGCAGACGTTGATGATGGGAAAG
TGGTGTTTGTTCCATGGGTTGAAACAGACTTCAGAACTGGTGATGCTCCATGGTGGGCTTAGAAATCCCATCTAGCTTCTATTATTAGTA
GTATATAATATTCTCTTGTACCATTGTTACATAGAAGCTTATTCCCCTTTTTATTATAAAGGAAAAAAAAATGTAACTATTGAAACATTA
CCCAAAATAACATTTCTCATTTGGGATACAGTTCTTTTTGTAATTGTTTATTATCATTTCATTTTTATTTTATAAAAAAAAAAAAAAAAA
AGATTTTCGACTAAGGTTTTGTGCAGGTATATCGTTGTTTTATCTTTCTTATTCTTGGAAGAAGCAGTTCAATGAGGAAGTATACATAGT
CTAGGATTTGCAGTTCAAATTTGAAGGTTGTCATTCTTACATTTTTAACCTGAGTTCTCATATGGTTCTATCTGCATACATTTGTAGCTT
AATCGATGATTCTTCAGTATTTTCGAGATGTTGTTCTTGGCTAAGCTGTTATTAATAAATGTAATGTTCATCCTATTTCAAAAAAAAAAA
AAAAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (16)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	2
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	7
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	1
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	12
Solanum lycopersicum	cLER	leaf 4 weeks	5127	11
Solanum lycopersicum	cLES	leaf 4 weeks	5243	5
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	19
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	6
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	2
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	3
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	10
Solanum lycopersicum	cTSC	seed	2256	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (87)

Alignment image suppressed for unigene with 87 aligned sequences.
[Show Image]

Markers Information (1)

Expression Data (3)

Annotations (manual: 2 | blast: 2 | go: 5 )

Protein prediction analysis (1)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	119	ABC1	110
2	24501	Rieske_dom Rieske Rieske_proteo	8
5	58536	Rieske_dom Rieske Rieske_proteo	8

Preceding Unigenes (1)

Unigene	Build
SGN-U143796	Lycopersicon Combined #2

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

Attribute	Value
Project Name:
Start Date:
End Date:
Event Type:
Event Description:
Event Web URL: