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Unigene SGN-U205053

Unigene Basic Information

Unigene ID:	SGN-U205053
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	205053
mRNA sequence:	Length: 287 bp

>SGN-U205053 Capsicum annuum #1 (1 members)
TTTTCAAATGGCCAAAAGGAAAATGCTGCTTATCTTGTGGATCAGGGTTGGCTACACAACAGAAAGGCTCAAGAGGCTGATGAGAAGGCT
AGCCAGGATATATTTGCAGCAAGAAACAAGAACATACAAAACATTATAACTATCGACTTGCATGGGCAACATGTCAAACCAGCAATGAGG
CTTTTGAAACTGCACCTTCTGTTCGGAGCATTTGTGCGATCTGTTAGGTTGTTCAGGGTTATCACTGGATGTGGGGTGCATGGCGTCGGG
AAGTCTAAGCTGAAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E498156
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g58720 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 3 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|21553543\|gb\|AAM62636.1\|	134	4.7e-31	65.26	285 bp (99.3%)	1
Description:	putative PRL1 associated protein [Arabidopsis thaliana]
arabidopsis	blastx	At5g58720.1	134	1.2e-32	65.26	285 bp (99.3%)	1
Description:	At5g58720.1 68412.m06654 PRL1 associated protein -related
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003684 damaged DNA binding
GO:0005524 ATP binding
GO:0006298 mismatch repair

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P39442 (96 Aa)

FSNGQKENAAYLVDQGWLHNRKAQEADEKASQDIFAARNKNIQNIITIDLHGQHVKPAMRLLKLHLLFGAFVRSVRLFRVITGCGVHGVG
KSKLKX

SignalP predicts non-secretion with a score of 0.028

IPR002625 Smr protein/MutS2 C-terminal

Prediction based on longest six frame method

>SGN-P159190 (95 Aa)

FSNGQKENAAYLVDQGWLHNRKAQEADEKASQDIFAARNKNIQNIITIDLHGQHVKPAMRLLKLHLLFGAFVRSVRLFRVITGCGVHGVG
KSKLK

SignalP predicts non-secretion with a score of 0.028

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	416	UBA_domain Smr/MutS2	41
2	23954	NAC_rel UBA_domain Smr/MutS2 CPW_WPC	10
5	58011	NAC_rel UBA_domain Smr/MutS2 CPW_WPC	10
1.1	101736	UBA-like	42
2	120509	UBA-like Smr protein/MutS2 C-terminal	9
5	130792	UBA-like Smr protein/MutS2 C-terminal	9

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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