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Unigene SGN-U202544

Unigene Basic Information

Unigene ID:	SGN-U202544
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	202544
mRNA sequence:	Length: 422 bp

>SGN-U202544 Capsicum annuum #1 (1 members)
AACAAGTCGAAGTCCTTGAACAACAACAACAACAACAGCCACGTCCAGCACTGTCAAAGAATGCACAGAAGAAACTGTTAAAGCAACAAA
GATACACAGCCAAAAAGGCAGAGAAAAAGGCATTACTGAAAGAGCAGAAGAGGATACAAGGTGAACGCAAGCGTAAAGAATGGGAAGAGA
AGCTAGCCGGATCAACCGAAGAGGAGAAGCAACATTTGATTGAATCAAGAAAGTGTTTAAGGAAAGAGAGAATGGATCAACGCTCTGAGG
AGAAAGGGAAGAAGATGCAGAGACTCAATAATGCTAAACAAAATGGACAAAATGTAGTTATTGATCTCGAATTTGATCGCCTCATGAATT
CCAGTGAGCTCCACAGCCTCGCTCAACAGATCATGTACTGTTATGCAGCGAATGGAAGATGC

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E506956
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g47680 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15238165\|ref\|NP_199579.1\|	154.8	2.1e-37	70.4	375 bp (88.9%)	3
Description:	unknown protein [Arabidopsis thaliana] >gi9758796\|dbj\|BAB09094.1\| unnamed protein product [Arab…
arabidopsis	blastx	At5g47680.1	154.8	1.3e-38	70.4	375 bp (88.9%)	3
Description:	At5g47680.1 68412.m05306 expressed protein contains similarity to unknown protein (pir\|\|T39016)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P156624 (140 Aa)

QVEVLEQQQQQQPRPALSKNAQKKLLKQQRYTAKKAEKKALLKEQKRIQGERKRKEWEEKLAGSTEEEKQHLIESRKCLRKERMDQRSEE
KGKKMQRLNNAKQNGQNVVIDLEFDRLMNSSELHSLAQQIMYCYAANGRC

SignalP predicts non-secretion with a score of 0.013

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P37005 (141 Aa)

NKSKSLNNNNNNXPRPALSKNAQKKLLKQQRYTAKKAEKKALLKEQKRIQGERKRKEWEEKLAGSTEEEKQHLIESRKCLRKERMDQRSE
EKGKKMQRLNNAKQNGQNVVIDLEFDRLRIPVSSTASLNRSCTVMQRMEDA

SignalP predicts non-secretion with a score of 0.012

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	3872	DUF425	4
2	27205	DUF425	4
5	61303	DUF425	4
1.1	104056	tRNA (guanine-N1-)-methyltransferase - Molecular Function: RNA binding (GO:0003723) - Biological Process: tRNA processing (GO:0008033) - Molecular Function: tRNA methyltransferase activity (GO:0008175) Protein of unknown function DUF425	5
2	123878	Protein of unknown function DUF425 tRNA (guanine-N1-)-methyltransferase - Molecular Function: RNA binding (GO:0003723) - Biological Process: tRNA processing (GO:0008033) - Molecular Function: tRNA methyltransferase activity (GO:0008175)	4
5	134044	Protein of unknown function DUF425 tRNA (guanine-N1-)-methyltransferase - Molecular Function: RNA binding (GO:0003723) - Biological Process: tRNA processing (GO:0008033) - Molecular Function: tRNA methyltransferase activity (GO:0008175)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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