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Unigene SGN-U201189

Unigene Basic Information

Unigene ID:	SGN-U201189
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201189
mRNA sequence:	Length: 314 bp

>SGN-U201189 Capsicum annuum #1 (1 members)
ACAAAAAGGAATCTAGTGGTAGTGAGATTTTTACCTTGAACATTAGATTGGAAGATGCAAATACTCAGCGAAGAACAGCTAAAGCTTTTA
TCCCACGATATCCAAAGGTAAAAGATGAAGCTTGGTGGTTAGTCCTTTGTAATCCTTCTGCGAGTGAACTGTATGCTTTGAAGAGAGCGA
CTTTCTCTGGTAGCCTGCAAACCGCATATGGATTTGCCATCCCACGCTGACCAATTTCCAGGGGATAAAGCTCATTCTCGTATCGGATTC
TTATATTGGGTTTGAACAAGAGCACTCCATTGAAGGATTGGCTT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS07	Flower bud	4235	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E498419
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g61140 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|9759460\|dbj\|BAB10376.1\|	70.09	1.4e-20	54.41	201 bp (64.0%)	3
Description:	RNA helicase [Arabidopsis thaliana]
arabidopsis	blastx	At5g61140.1	70.09	3.7e-22	54.41	201 bp (64.0%)	3
Description:	At5g61140.1 68412.m06940 DEAD box RNA helicase, putative similar to ASC-1 complex subunit P200 …
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35706 (82 Aa)

SQSFNGVLLFKPNIRIRYENELYPLEIGQRGMANPYAVCRLPEKVALFKAYSSLAEGLQRTNHQASSFTFGYRGIKALAVLR

SignalP predicts non-secretion with a score of 0.044

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P155240 (82 Aa)

SQSFNGVLLFKPNIRIRYENELYPLEIGQRGMANPYAVCRLPEKVALFKAYSSLAEGLQRTNHQASSFTFGYRGIKALAVLR

SignalP predicts non-secretion with a score of 0.044

No InterPro domain matches or not analyzed.

Gene Family (3)

Family Build (I value*)	Family ID	# Members
1.2	10215	1
2	37856	1
5	75337	1

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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