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Unigene SGN-U201105

Unigene Basic Information

Unigene ID:	SGN-U201105
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201105
mRNA sequence:	Length: 400 bp

>SGN-U201105 Capsicum annuum #1 (1 members)
ATTTTGATCATCACCATCTCAGCTCAGACTTCACTATCTTTTAGCCACAAAATTCAAAGCCCATCACTTCCTCCTGCAAAATCTACACCC
AATTTGGAGCCGTCAATTAGCCTGAAAATTTTGTAGAAAATGGGTTCAGTATTTGATGAAAAAGATTTCTTGGCAAGCTGTGGGAGCACC
AAATTCTCCAACAATATGGTTGCAGCTGGTCCTTTNTCCACTCTCCAAGATGCCATCCAAGCTGCCAGAGATATCTGGTTCAACAAGGTT
GATGTAAATGGGTGGCTTGAAGCTTTTGCTGCTCATCCACAAATCGGTCAAACCCCTTCCAGGGATCATAAAAGCCCTATTTTGCTCAGT
GGAGCAGGGAGAGCATCAACAGCTATGTCCACTGCTACTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS10	Hairy root	2179	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E505297
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g58220 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15237138\|ref\|NP_200630.1\|	81.26	3.1e-15	45.56	270 bp (67.5%)	1
Description:	TTL (Transthyretin-Like protein); steroid binding [Arabidopsis thaliana] >gi56749789\|sp\|Q9LVM5.…
arabidopsis	blastx	At5g58220.1	81.26	1.6e-16	45.56	270 bp (67.5%)	1
Description:	At5g58220.1 68412.m06594 unknown protein (pir\|\|T34863) -related
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P155154 (91 Aa)

KMGSVFDEKDFLASCGSTKFSNNMVAAGPXSTLQDAIQAARDIWFNKVDVNGWLEAFAAHPQIGQTPSRDHKSPILLSGAGRASTAMSTA
T

SignalP predicts non-secretion with a score of 0.04

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35626 (91 Aa)

MGSVFDEKDFLASCGSTKFSNNMVAAGPXSTLQDAIQAARDIWFNKVDVNGWLEAFAAHPQIGQTPSRDHKSPILLSGAGRASTAMSTAT
X

SignalP predicts non-secretion with a score of 0.039

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2818	Transthyretin Ricin_B_lectin	6
2	25457	Transthyretin Ricin_B_lectin	6
5	59466	Transthyretin Ricin_B_lectin	6
1.1	104072	Transthyretin - Molecular Function: carrier activity (GO:0005386) - Molecular Function: steroid binding (GO:0005496) - Biological Process: transport (GO:0006810)	5
2	122756	Transthyretin - Molecular Function: carrier activity (GO:0005386) - Molecular Function: steroid binding (GO:0005496) - Biological Process: transport (GO:0006810)	5
5	132945	Transthyretin - Molecular Function: carrier activity (GO:0005386) - Molecular Function: steroid binding (GO:0005496) - Biological Process: transport (GO:0006810)	5

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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