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Unigene SGN-U200628

Unigene Basic Information

Unigene ID:	SGN-U200628
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200628
mRNA sequence:	Length: 403 bp

>SGN-U200628 Capsicum annuum #1 (1 members)
CGGCCGCTGGACGATCTGGTACCCGAGCATTTCATGCATTGATGTCTTTATTGAATAAACAAGTTGCTCATTACGAGTCTCTTCAGGGGA
AAATTGATGATCTATGCAAGCGGATGCATGACAATGACCTTAATGTAAATTGTGAAGGTTCAGTTATACAAAAAACAAAGGAAGAAACTA
AGATGCTAGAGCACTTTCTTGAAGAAACATTTCAATTGCAAAGATACATAGTTGCAACAGGACAGAAACTGATGGAAGTCCAAACAAAGA
TTTCTTCTGGATTTGTCGGAGCTGCAGAAGAACTTGATACACCTGCAAGCTTTGATGTCAAACGGTTTGCTGATGGCATTAGAACTCTTT
TTAGGGAAGCCCAGAGAGGCCTTGAAGCTCGCATATCTCGAAT

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS08	Anther	2304	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E501106
[Show Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g53020 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15237333\|ref\|NP_200114.1\|	137.9	2.8e-32	58.09	387 bp (96.0%)	3
Description:	gi\|15237333\|ref\|NP_200114.1\| hypothetical protein [Arabidopsis thaliana] gi\|8809591\|dbj\|BAA9714…
arabidopsis	blastx	At5g53020.1	137.9	1.5e-33	58.09	387 bp (96.0%)	3
Description:	At5g53020.1 68412.m05954 hypothetical protein similar to unknown protein (emb\|CAB82814.1)
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154671 (133 Aa)

AAGRSGTRAFHALMSLLNKQVAHYESLQGKIDDLCKRMHDNDLNVNCEGSVIQKTKEETKMLEHFLEETFQLQRYIVATGQKLMEVQTKI
SSGFVGAAEELDTPASFDVKRFADGIRTLFREAQRGLEARISR

SignalP predicts non-secretion with a score of 0.282

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P35160 (134 Aa)

AAGRSGTRAFHALMSLLNKQVAHYESLQGKIDDLCKRMHDNDLNVNCEGSVIQKTKEETKMLEHFLEETFQLQRYIVATGQKLMEVQTKI
SSGFVGAAEELDTPASFDVKRFADGIRTLFREAQRGLEARISRX

SignalP predicts non-secretion with a score of 0.282

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	2027	DUF904 Phd_fam Myosin_tail HAP1_N Ez/rad/moesin DUF164	9
2	24893	DUF904 Phd_fam Myosin_tail HAP1_N Ez/rad/moesin DUF164	7
5	64525		2
1.1	101367	Kinesin motor region - Molecular Function: microtubule motor activity (GO:0003777) - Molecular Function: ATP binding (GO:0005524) - Cellular Component: microtubule associated complex (GO:0005875) - Biological Process: microtubule-based movement (GO:0007018)	846
2	125088		3
5	137853		2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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