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Unigene SGN-U198425

Unigene Basic Information

Unigene ID:	SGN-U198425
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	198425
mRNA sequence:	Length: 469 bp

>SGN-U198425 Capsicum annuum #1 (2 members)
CTTAAGATTCCAGAAATGGTGTGCATACGAAAGGCAACAATAGACGATTTACTTGCAATGCAAGCATGCAATTTGCTATGCCTGCCTGAA
AACTACCAAATGAAATACTATTTCTATCACATACTTTCATGGCCACAACTTTTATACGTTGCTGAAGATTACAATGGTAAGATTGTTGGA
TATGTGTTAGCTAAAATGGAAGAGGAAACTACTGAGTGTCATGGACATATCACTTCACTTGCCGTTGTTAGGACTCATCGGAAACTTGGT
TTGGCTACTAAGCTCATGACCGCTGCTCAGAATGCCATGGAACAGGTGTTTGGAGCAGAGTATGTGTCTCTGCATGTGAGGAAGAGCAAC
AGGGCTGCCATTTAAGCTGTATACAGAGACGTTAGGATATAAGATTCATGATATGGAACCCAACTACTATGCAGATGGGGAACATGCTTA
TGATATGAGGAAGGAATTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (2)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS11	Early root	2168	1
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (2)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At5g13780 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15240705\|ref\|NP_196882.1\|	223.4	5.4e-69	89.83	354 bp (75.5%)	1
Description:	GCN5-related N-acetyltransferase, putative [Arabidopsis thaliana] >gi10177343\|dbj\|BAB10599.1\| u…
arabidopsis	blastx	At5g13780.1	223.4	2.4e-70	89.83	354 bp (75.5%)	1
Description:	At5g13780.1 68412.m01483 N-acetyltransferase, putative similar to SP\|P07347 N-terminal acetyltr…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0008080 N-acetyltransferase activity

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P33431 (156 Aa)

LKIPEMVCIRKATIDDLLAMQACNLLCLPENYQMKYYFYHILSWPQLLYVAEDYNGKIVGYVLAKMEEETTECHGHITSLAVVRTHRKLG
LATKLMTAAQNAMEQVFGAEYVSLHGGRATGLPFKLYTETLGYKIHDMEPNYYADGEHAYDMRKEL

SignalP predicts non-secretion with a score of 0.18

IPR000182 GCN5-related N-acetyltransferase

Prediction based on longest six frame method

>SGN-P152406 (124 Aa)

LKIPEMVCIRKATIDDLLAMQACNLLCLPENYQMKYYFYHILSWPQLLYVAEDYNGKIVGYVLAKMEEETTECHGHITSLAVVRTHRKLG
LATKLMTAAQNAMEQVFGAEYVSLHVRKSNRAAI

SignalP predicts non-secretion with a score of 0.18

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	280	GCN5acetyl_trans	56
2	25978	RimI GCN5acetyl_trans	5
5	59962	RimI GCN5acetyl_trans	5
1.1	101706	GCN5-related N-acetyltransferase - Molecular Function: N-acetyltransferase activity (GO:0008080)	44
2	123781	GCN5-related N-acetyltransferase - Molecular Function: N-acetyltransferase activity (GO:0008080)	4
5	133958	GCN5-related N-acetyltransferase - Molecular Function: N-acetyltransferase activity (GO:0008080)	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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