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Unigene SGN-U642887

Unigene Basic Information

Unigene ID:	SGN-U642887
Unigene Build:	Coffee species #1
Date:	2010-04-19
Organism:	C.canephora C.arabica
Alternative ID:	none
mRNA sequence:	Length: 330 bp

>SGN-U642887 Coffee species #1 (1 members)
GCAGACATGTCTAATGTTAGTTCTGACGCAGCCAAAGCCATCAGTAAGGAAATGCCGGTTGAACTCTTGCGAGCTAGTCTCCCTCATACC
AGTGAGCAACAAAGAAAGCTGCTATTGGATTTTGCACAGCAGTCAATGCCTGTTCAAGGGTTAGGTAATCAGGGTGGTGATAGTGGTGGC
CCTTGAGTGTAACATGTTATTGCGAGGCTTCACATATAGCTAAAGACATGCTGGAAGACATGCCAGTGATTGTGCAATGAGGGATTAGGT
TTTTTCCTTTTTTCTTTTTTCTTCCTTTTTTTTTTTAGGGGGGGGGGGGGTTAGTGGGTG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Coffea canephora	cccs46w	Endosperm and perisperm 46 week after pollination	10903	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E673351
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|225462193\|ref\|XP_002267779.1\|	73.6	7e-12	72.92	144 bp (43.6%)	2
Description:	PREDICTED: hypothetical protein [Vitis vinifera]
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P809376 (61 Aa)

ADMSNVSSDAAKAISKEMPVELLRASLPHTSEQQRKLLLDFAQQSMPVQGLGNQGGDSGGP*

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P827124 (61 Aa)

ADMSNVSSDAAKAISKEMPVELLRASLPHTSEQQRKLLLDFAQQSMPVQGLGNQGGDSGGP

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (0)

None

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