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Unigene SGN-U205840

Unigene Basic Information

Unigene ID:	SGN-U205840
Unigene Build:	Solanum melongena #2
Date:	2004-01-12
Organism:	S.melongena
Alternative ID:	205840
mRNA sequence:	Length: 396 bp

>SGN-U205840 Solanum melongena #2 (3 members)
TTTTTTTTTTTTTTTTTTTAGCAAACTAAGGTGACTAACAGACAACTGAAATTAGGTTATTACATTCTATCGGACTGCCAACAAAGGAAC
TAGATCACTCATTTATTTTATTTAGAACTGTACATGATCTGCTTTCTTCGTTCATCAGTCCAACCCAGTCCAGCAGAACCTTTGTTTCCC
ATAGCCTGTAATGGTTCAACCAATCCCTTGTTGCTGCAGCCAAGCGCCTCTCCCTCTTTCCAGCCCATGTTTTCCAACATTCTTCTGGCA
TAGCTACCAGCTCCAAATGAATTGTTCAGGGATTCAGAAAGAGCTTCCTCTGGATCAGCAGATGCATTCAAAGGAACAGAATCATCAGAG
TTGGGTGAAATTTTTTGCCCTGGACCAACACCAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum melongena	cSML	buds & flowers anthesis-stage flowers, 4-8 week old plants	4031	3

mRNA member sequences (3)

To view details for a particular member sequence, click the SGN-E# identifier.

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 2 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30689939\|ref\|NP_195140.2\|	99.75	8.5e-21	56.52	264 bp (66.7%)	-2
Description:	gi\|30689939\|ref\|NP_195140.2\| expressed protein [Arabidopsis thaliana]
arabidopsis	blastx	At4g34140.1	99.75	4.3e-22	56.52	264 bp (66.7%)	-2
Description:	At4g34140.1 68411.m04407 expressed protein
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0003676 nucleic acid binding
GO:0005622 intracellular

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P208237 (95 Aa)

FGVGPGQKISPNSDDSVPLNASADPEEALSESLNNSFGAGSYARRMLENMGWKEGEALGCSNKGLVEPLQAMGNKGSAGLGWTDERRKQI
MYSSK

SignalP predicts non-secretion with a score of 0.025

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P29577 (95 Aa)

FGVGPGQKISPNSDDSVPLNASADPEEALSESLNNSFGAGSYARRMLENMGWKEGEALGCSNKGLVEPLQAMGNKGSAGLGWTDERRKQI
MYSSK

SignalP predicts non-secretion with a score of 0.025

IPR000467 D111/G-patch

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	215	G_patch	69
2	30054	CW_binding Ribosomal_L29 G_patch	2
5	64761	CW_binding Ribosomal_L29 G_patch	2
1.1	101602	D111/G-patch - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: intracellular (GO:0005622)	62
2	126576	D111/G-patch - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: intracellular (GO:0005622)	2
5	137508	D111/G-patch - Molecular Function: nucleic acid binding (GO:0003676) - Cellular Component: intracellular (GO:0005622)	2

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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