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Unigene SGN-U201671

Unigene Basic Information

Unigene ID:	SGN-U201671
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	201671
mRNA sequence:	Length: 359 bp

>SGN-U201671 Capsicum annuum #1 (1 members)
CCTTGGCGAAGGCTCTGATTCTCTTCCGAGAGGTCGGTTTAAGGCACCTGCTGGTAATACCCAAGGTTTCTGGGAGGGTACCTGTTGTGG
GGATACTTACAAGGCATGATTTCATGCCAGAGCATGTGCTCAGCTTGTATCCATCCTTGGCTAAGAGCAAGTGGAAAAGATTAAGATTCA
AGTTACCTGGCGGGGTTAAAATCTTTTAGAGACTACATCGAAGTTCTTAAAATAGTCCTATGGAAGTATGTGAATAGAGCTGTGTACAAC
ATGACTGCAATATCCTAGGTAGTCAAAGCATATTCTTCCCTATTATTCCTTGTCAAATCCAAAGATCCTAAGGATCTTCTTAAGATGGA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS12	Placenta	4279	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E509682
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|15242770\|ref\|NP_198313.1\|	108.2	2.5e-23	80.65	186 bp (51.8%)	3
Description:	chloride channel-like (CLC) protein, putative [Arabidopsis thaliana] >gi41688449\|sp\|P60300.1\|CL…
arabidopsis	blastx	At5g33280.1	108.2	6.6e-25	80.65	186 bp (51.8%)	3
Description:	At5g33280.1 68412.m03556 chloride channel-like (CLC) protein, putative similar to CLC-c, At5g49…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (3)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P36169 (119 Aa)

LGEGSDSLPRGRFKAPAGNTQGFWEGTCCGDTYKADFMPEHVLSLYPSLAKSKWKRLRFKLPGGVKTFRDYIEVLKIVLWKYVNRAVYNM
TAXILGVKAYSSLLFLVKSKDPKDLLKMX

SignalP predicts non-secretion with a score of 0.042

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P155732 (68 Aa)

LAKALILFREVGLRHLLVIPKVSGRVPVVGILTRHDFMPEHVLSLYPSLAKSKWKRLRFKLPGGVKIF

SignalP predicts secretion with a score of 0.471

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P155733 (68 Aa)

KILTPPGNLNLNLFHLLLAKDGYKLSTCSGMKSCLVSIPTTGTLPETLGITSRCLKPTSRKRIRAFAK

SignalP predicts non-secretion with a score of 0.318

No InterPro domain matches or not analyzed.

Gene Family (4)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	10306		1
2	37989		1
5	75511		1
1.1	102113	Chloride channel plant CLC - Molecular Function: voltage-gated chloride channel activity (GO:0005247) - Biological Process: chloride transport (GO:0006821) - Cellular Component: membrane (GO:0016020) CBS Cl- channel voltage gated - Molecular Function: voltage-gated chloride channel activity (GO:0005247) - Biological Process: chloride transport (GO:0006821) - Cellular Component: membrane (GO:0016020)	22

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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