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Unigene SGN-U298589

Unigene Basic Information

Unigene ID:	SGN-U298589
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	298589
mRNA sequence:	Length: 356 bp

>SGN-U298589 Solanum tuberosum #4 (1 members)
ATCAAAACAAAATAAAAAATAAAAAAAGGAAAAAGAAAATGAGACGGGGGCATCACCGGCGTCGATCATCGACACCGTCAGTGGACTTCG
GAGTAGATGATGAAGAAGAAGAATCATCGGAAGCTCAAATGAAGTGCGTTTCATGCAAGGAGGATTACAGCTCACGTGACGCCGGTACTT
GCAGGGAGTGTTACGAAGAAGCTAGCGAGACTGAGGAAGAGCTCAAGCGTGAGATCGAAGACCTTAAAGCCAAAGTAAACTTCCTCCGTT
TCTGGAGTCCATCCCAGCACCTTCACCAACAACAACGAACTGTACCCTTCTTCTCCGACATCGTTTTGGTCGCTTCCCATGATGAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E476414
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 1 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|255558542\|ref\|XP_002520296.1\|	87.4	5e-16	66.28	258 bp (72.5%)	1
Description:	protein binding protein, putative [Ricinus communis] >gi223540515\|gb\|EEF42082.1\| protein bindin…
arabidopsis	blastx	No significant hits ( or none blast was used over this dataset )

swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P240919 (118 Aa)

QNKIKNKKRKKKMRRGHHRRRSSTPSVDFGVDDEEEESSEAQMKCVSCKEDYSSRDAGTCRECYEEASETEEELKREIEDLKAKVNFLRF
WSPSQHLHQQQRTVPFFSDIVLVASHDE

SignalP predicts non-secretion with a score of 0.022

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P96422 (106 Aa)

MRRGHHRRRSSTPSVDFGVDDEEEESSEAQMKAFHARRITAHVTPVLAGSVTKKLAETEEELKREIEDLKAKETSSVSGVHPSTFTNNNE
LYPSSPTSFWSLPMMX

SignalP predicts non-secretion with a score of 0.196

No InterPro domain matches or not analyzed.

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	139	BTB_POZ	96
2	28170		3
5	66497		2
1.1	101373	Armadillo-like helical - Molecular Function: binding (GO:0005488)	564
2	122550	BTB - Molecular Function: protein binding (GO:0005515) BTB/POZ	5
5	133780	BTB - Molecular Function: protein binding (GO:0005515) BTB/POZ	4

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (1)

Unigene	Build
SGN-U264470	Solanum tuberosum #3

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