Sol Genomics Network

Unigene SGN-U583160

Unigene Basic Information

Unigene ID:	SGN-U583160
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 2346 bp

>SGN-U583160 Tomato 200607 #2 (95 members)
ATCATGAGCCCTTGTGGATATGAAGCTACTGTTTGCTGGCTTGAGATGATTATATGCAACTTAATTTTTAGAAGAAAACACTTGTCTAGT
GAGGACTGAGGAACCTTCACTTCAGATTTCTCACTTGGGAGCTTCTGGTGTTGCCGCAAGCACATAATGGCGTCCAAGTATCATGGACCA
ATCAACAGAACACGGCGACCGATCTCTATATTAATTGTAATTGGTCTTTGTTGTTTCTGTTATCTAATAGGAATTTGGCAGAAAAGTGGA
TCCGGAAAGGGAGATAAATTAGCACTACAAGTGACTGAGCAAACTGCTGACTGCAATGTTTTTCCACAAACCACTCTGGATTTTGAGTCA
CACCATAATTATGTGGAAACGGTTGAAACTTCAGAACTAACAGTTAAAAGATTCAAATCATGTGAAGCTAAATACACTGACTATACTCCC
TGCCATGAACAAGACCGAGCTATGAAATTCCCAAGGGAAGATATGATATATAGAGAAAGGCATTGCCCTCCAGATGATGAAAAGCTTCGT
TGTCTGATTCTAGCACCCAAAGGATACACAACTCCATTTCCATGGCCCAAAAGCCGTGATTATGCCTACTATGCTAATGTTCCTTACAAA
CACTTGACAGTTGAGAAGGCAGTCCAGAACTGGGTGCAGTTTCAGGGAAACGTTTTCAAATTTCCGGGAGGAGGTACAATGTTCCCTAGA
GGAGCAGATGCATATATTGATGAACTTGCTTCCGTGGTTCCAATTGGAAGTGGCATGATACGAACTGCTCTTGACACTGGTTGTGGGGTT
GCTAGCTGGGGTGCTTACTTGCTGAAGAGGAATATTCTGGCGATGTCATTTGCACCTAAGGACAATCATGAAGCACAAGTGCAATTTGCT
TTGGAGCGAGGTGTACCTGCTGTTATTGGAGTTCTTGGTTCCATAAGCCTTCCATTCCCATCAAGATCATTTGACATGTCTCATTGTTCT
CGGTGTCTGATTCCCTGGGCATCAAAAGAGGGTATGTACATGATGGAAGTTGATCGAGTTCTGAGACCTGGTGGATACTGGATACTGTCT
GGTCCTCCACTCAATTGGAAGACCTATCACAGAGTCTGGAACAGGACCAAGGAGAATTGTAGAGCCGAGCAAAGAAGGATCGAAGAGCAT
GCTGAGCTTCTTTGCTGGGAGAAGAAGTACGAAAAAGGTGATGTGGCTATATGGAGGAAAAACATAAATGGAAAGTCATGCAGAAGAGCA
TCCGCCAACATATGTCAAACAAAGGATGCTGATAATGTCTGGTATAAGAAAATGGATGCATGCATAACCCCCTACCCCGACGTGAAGAAT
TCTGATGAAGTAGCTGGAGGAGAATTGAAGAAGTTTCCTGCTAGGCTTTTTGCAGTTCCCCCACGTATAGCTAATGACTTGGTTTCTGGG
GTAACAGTTGAATCTTATGAAGAGGATAATAAGCTTTGGAAGAAACACGTCACTTCTTACAAGAGGAGCATTAGCCTACTTGGCACCACT
AGATACCACAACATAATGGACATGAATGCCGGACTTGGAGGATTTGCAGCAGCACTAGACTCTCCTAAACTGTGGGTGATGAACGTTGTG
CCAACTATTGCTGAAAACACTCTTGGTGTCGTATACGAGAGGGGCTTAATTGGCATATACCATGACTGGTGTGAAGGCTTCTCTACATAC
CCGAGAACGTATGACCTTCTTCATGCTAATCGCTTGTTCACTCTGTACCAGGACAAGTGTGAATTTGAAGATATTCTCCTAGAAATGGAC
CGTGTTCTGCGTCCTGAAGGCGCGGTCATTCTTCGAGATGGAGTTGAAGTCTTGAACAAGGTTAGGAAAATCGCCGCGGGCTTGAGATGG
GACACTAAATTATTAGATCATGAAGATGGACCCTTGGTACCTGAGAAAATCTTTGTTGCTGTCAAACAATATTTCGTTGAAGGCGATGAA
GACCAAAGCACGCCAAATGACGATTGAGTGATGCCAATATTCGATTACATCGAGAGAAACCTGAGAATTCTGAATTGGGAAGGTAAGATC
TCCAGGCAGAGATATGAAGGTTTTTTTTCTTCTCAAATATGGCATACAACAAGTAGTGCAAGTTCCCATGTAGAGCAATTTTAGTTATTT
TTCCTTTAATGTGTGATTTTTGGAGATCTTTTTTCTCCAAATAATGAAGCAAAGCAAGAGTTCATTAGAGTGATATGTATGTTTGGGAGC
AAATTTAATAGTTGTTTCCACTAATTACAGAGTTGAATTTTGAACAATTGTAATCCCTATTTTTTTTTTTAATCTTGGTAATTTAATTTA
TTTAAA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
Solyc08g077240	Solyc08g077240

Genomic locations (0)

None

Library representation (27)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	1
Solanum lycopersicum	LA	Leaf Mature leaves	6589	2
Solanum lycopersicum	LC	Leaf Mature leaves	5712	5
Solanum lycopersicum	LeMiToFr02	fruit	18697	1
Solanum lycopersicum	LeMiToLf01	leaf	30679	13
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	6
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	13
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	8
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	8
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	8
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	2
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	3
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	6
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	1
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	1
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	1
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	4
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	2
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	1
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	1
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	1
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	1
Solanum lycopersicum	cTSC	seed	2256	1
Solanum lycopersicum	vSlycmRNA		8362	2
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	1

mRNA member sequences (95)

Alignment image suppressed for unigene with 95 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (7)

Annotations (manual: 0 | blast: 2 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U313494	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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