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Unigene SGN-U601376

Unigene Basic Information

Unigene ID:	SGN-U601376
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 246 bp

>SGN-U601376 Tomato 200607 #2 (1 members)
CTTAGGCAAATGTTTCTTTCCATGACAGAGGAGGTCCGTGTTATAATTGTCAAATTAGCTGATAGATTACATAACATGCGCACTCTTTCA
CATATGCCTCCACACAAGCAGTCTGGAATAGCAACAGAGACGCTGCAGGTTTTTGCTCCTTTGGCAAAACTTCTCGGAATATACCAAATC
AAGTCAGAGCTTGAAAACTTGGCATTTATGTATACAAATGCTCAAGACTATGCCAGGGTGCAGCGC

[Blast] [AA Translation]

Associated Loci (2)

Locus symbol	Locus name	Gene activity
Solyc09g075390	Solyc09g075390
Solyc09g098580	Solyc09g098580

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	1

mRNA member sequences (1)

Alignment image suppressed for unigene with only one aligned EST SGN-E317730
[Show Image]

Markers Information (0)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

None cosii markers associated to this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 3 | go: 0 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|30268666\|dbj\|BAC76004.1\|	162	1e-38	100	246 bp (100.0%)	1
Description:	RelA-SpoT like protein RSH1 [Nicotiana tabacum]
arabidopsis	blastx	At4G02260.2	137	1e-33	85	240 bp (97.6%)	1
Description:	Symbols: AT-RSH1, RSH1 \| RSH1 (RELA-SPOT HOMOLOG); catalytic \| chr4:985451-991178 FORWARD
swissprot	blastx	O54408	98.6	8e-21	58.23	237 bp (96.3%)	1
Description:	GTP pyrophosphokinase OS=Bacillus subtilis GN=relA PE=3 SV=3

GO Terms Annotations

No Gene Ontology annotation

Protein prediction analysis (2)

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P691014 (82 Aa)

LRQMFLSMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSGIATETLQVFAPLAKLLGIYQIKSELENLAFMYTNAQDYARVQR

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Prediction based on longest six frame method

>SGN-P733596 (82 Aa)

LRQMFLSMTEEVRVIIVKLADRLHNMRTLSHMPPHKQSGIATETLQVFAPLAKLLGIYQIKSELENLAFMYTNAQDYARVQR

SignalP analysis not run for this sequence.

No InterPro domain matches or not analyzed.

Gene Family (0)

None

Preceding Unigenes (1)

Unigene	Build
SGN-U343694	Tomato 200607 #1

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