Sol Genomics Network

Unigene SGN-U578839

Unigene Basic Information

Unigene ID:	SGN-U578839
Unigene Build:	Tomato 200607 #2
Date:	2009-03-25
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	none
mRNA sequence:	Length: 1873 bp

>SGN-U578839 Tomato 200607 #2 (480 members)
GGCGATTGGCGGCCAAATCGGCCGAATTGACACCAAACATAAACTGTTTATAGATCAAAAGGCTCTCTCTTCAATTCTTCTTTCATTTCC
ATCACCATGGATCCCTCTAAGTATCGCCCATCAAGCGCATACGACACCCCTTTCTTGACAACAAATGCTGGTGGTCCTGTGTACAACAAT
GTTTCTTCCTTGACTGTTGGACCTAGAGGGCCTGTTCTGCTTGAGGATTACTATCTAATTGAGAAGCTCGCGACATTTGATCGCGAGAAG
ATACCTGAACGTGTTGTTCATGCTAGAGGTGCTAGTGCTAAGGGATTCTTTGAAGTTACTCATGACATTTCTCATCTTACTTGTGCTGAT
TTTCTCCGAGCTCCTGGCGCTCAAACGCCTGTTATTTGTCGATTCTCTACTGTTGTCCATGAACGTGGAAGCCCCGAGTCTATCAGGGAC
ATTCGTGGTTTTGCTGTCAAGTTCTACACCAGAGAGGGTAACTTTGATCTTGTTGGAAACAATGTCCCCGTGTTCTTTAATCGTGATGCT
AAGTCGTTCCCTGACACGATTCGTGCATTGAAACCAAATCCAAAGTCACACATTCAGGAGAACTGGAGGATACTTGATTTCTTCTCGTTC
CTTCCTGAGAGTTTGCATACATTCGCCTTCTTCTACGATGATGTTTGTCTCCCAACGGATTACAGACACATGGAAGGTTTTGGCGTTCAC
GCGTATCAATTGATTAACAAAGAGGGGAAAGCACATTATGTGAAGTTCCACTGGAAGCCAACTTGTGGTGTGAAATGTATGTCTGAGGAA
GAAGCTATTAGAGTCGGTGGTACTAATCATAGCCACGCGACCAAGGATCTTTACGATTCAATTGCTGCTGGAAACTATCCTGAGTGGAAG
CTTTTTATCCAAACAATGGACCCCGAGGATGTAGACAAGTTCGATTTTGATCCTCTGGATGTAACCAAGACATGGCCTGAGGATCTCTTG
CCGTTGATCCCAGTTGGTCGATTGGTGTTGAACAGGAACATTGATAACTTCTTCGCAGAGAATGAACAACTCGCGTTTAACCCTGGACAT
ATTGTCCCTGGTATTTACTATTCCGAGGATAAGCTTCTCCAGACTAGGATATTCGCGTATGCTGATACTCAGAGACACCGTATTGGACCA
AACTATATGCAGCTCCCAGTTAATGCTCCCAAGTGTGGTCATCACAACAATCATCGCGATGGTGCTATGAACATGACACATCGCGATGAA
GAGGTGGATTATTTGCCCTCGAGGTTTGATCCTTGTCGTCCTGCTGAGCAGTACCCGATTCCTTCTTGTGTCTTGAATGGAAGGCGTACA
AATTGTGTCATTCCGAAAGAAAACAACTTCAAACAGGCAGGGGAGAGGTACAGATCATGGGAACCTGACAGGCAAGACAGATACATCAAC
AAATGGGTTGAGTCTTTATCCGATCCACGAGTCACTCATGAGATTCGCAGCATATGGATATCATACTTGTCTCAGGCTGACAAGTCCTGT
GGTCAGAAGGTCGCTTCTCGTCTCACTGTGAAGCCTACAATGTGAAAAATCAATGAAAATAGTTGAAATGGTTTCAAGCTGCAAATGTTG
AAGGACTAATGCAAAAAAACGTCCGCGTTGTGCTATAAACTGTACTTCTTTTTCAATCGTAATGTTGTATTTTGTATCGAATTTCGATGT
CTTGTGTTTTTACTATAATGATGTTGGAACCTGAATAAGTTCACAGTTGTATGTTCAATGTTTCACTTTCTAAAGTTATGTAATTATGTT
GAGTTCTTGTTCACTTTGGTGCTTGAAGAACACACTCTCAATTTCAATAATATCACTTTCATTTCAGTATCTC

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
cat1	catalase

Genomic locations (0)

None

Library representation (46)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum pennellii	cLPT	leaf trichomes 4-8 weeks old	2729	4
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	28
Solanum lycopersicum	FB	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	6270	9
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	18
Solanum lycopersicum	LA	Leaf Mature leaves	6589	4
Solanum lycopersicum	LB	Leaf Mature leaves	3316	5
Solanum lycopersicum	LC	Leaf Mature leaves	5712	1
Solanum lycopersicum	Le2TR	roots 1-,2-,3-, and 4- month-old	1179	1
Solanum lycopersicum	LeCAD	Seedling Two-week-old seedings	428	2
Solanum lycopersicum	LeMiToFr02	fruit	18697	14
Solanum lycopersicum	LeMiToLf01	leaf	30679	41
Solanum lycopersicum	LePS	root 5 weeks old plants	823	2
Solanum lycopersicum	LeTransC5	Root 1.5-month old plants	561	1
Solanum lycopersicum	LeTrich01	Isolated leaf trichomes Apical internodes of 5-week old plants.	7299	1
Solanum lycopersicum	LeWpAFLP	whole plants, except for the roots	402	1
Solanum lycopersicum	Sl_LeafInf01	Developmental stage	125	2
Solanum lycopersicum	Sl_RootInf01	root and collar Three weeks old	385	5
Solanum lycopersicum	Sl_RootInf02	root and collar Three weeks old	333	2
Solanum lycopersicum	Sl_RootSSH02	root	152	2
Solanum lycopersicum	Sl_RootSSH03	root	149	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	5
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	97
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	10
Solanum lycopersicum	cLEF	fruit pericarp mature green	5317	30
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	38
Solanum lycopersicum	cLEI	whole seedlings germinating seed	3927	18
Solanum lycopersicum	cLEL	developing flower buds and flowers anthesis-stage flowers from full grown plants, 4-8 weeks old	11276	8
Solanum lycopersicum	cLEM	fruit immature green fruit	4240	1
Solanum lycopersicum	cLEN	fruit pericarp red ripe to over-ripe	3979	15
Solanum lycopersicum	cLER	leaf 4 weeks	5127	5
Solanum lycopersicum	cLES	leaf 4 weeks	5243	6
Solanum lycopersicum	cLET	leaf 4-6 weeks	9135	8
Solanum lycopersicum	cLEW	mixed roots grown under different nutrient and mineral difficiencies 4-8 weeks	3175	3
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	2
Solanum lycopersicum	cLEY	root pre-anthesis/pre-fruit loading	3259	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	3
Solanum lycopersicum	cTOA	developing flower buds and flowers 0-3mm flower buds from full grown plants	6259	3
Solanum lycopersicum	cTOB	developing flower buds and flowers 3-8mm flower buds from full grown plants	5524	4
Solanum lycopersicum	cTOC	developing flower buds and flowers 8mm to pre-anthesis flower buds from full grown plants	5759	4
Solanum lycopersicum	cTOD	flowers anthesis-stage flowers from full grown plants	5642	7
Solanum lycopersicum	cTOE	Crown gall crown galls from full-grown plants (4-8 wks old)	5204	35
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2
Solanum lycopersicum	cTOS	suspension cultures	8026	18
Solanum lycopersicum	cTSC	seed	2256	2
Solanum lycopersicum	vSlycmRNA		8362	6
Solanum habrochaites	cLHT	leaf trichomes 4-8 weeks old	2457	5

mRNA member sequences (480)

Alignment image suppressed for unigene with 480 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (4)

Annotations (manual: 4 | blast: 3 | go: 0 )

Protein prediction analysis (2)

Gene Family (0)

None

Preceding Unigenes (3)

Unigene	Build
SGN-U312410	Tomato 200607 #1
SGN-U312411	Tomato 200607 #1
SGN-U333538	Tomato 200607 #1

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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