Sol Genomics Network

This unigene is from an out-of-date build, Tomato 200607 #1
It has been superseded by SGN-U578982 in the current build, Tomato 200607 #2

Unigene SGN-U314417

Unigene Basic Information

Unigene ID:	SGN-U314417
Unigene Build:	Tomato 200607 #1
Date:	2006-07-27
Organism:	S.lycopersicum S.habrochaites S.pennellii S.pimpinellifolium S.peruvianum S.cheesmaniae S.lycopersicoides
Alternative ID:	314417
mRNA sequence:	Length: 1192 bp

>SGN-U314417 Tomato 200607 #1 (24 members)
CTCAACTCCCCCCACCACTTGCCTCTCTCTTCTTTCTATTTCTATAAAATAAAAATAAAATACCCTCACACTCACCAACAAACAATTCAG
TTTCCTTCTTTCATACTTTCAATACCCATAATGGCTATTAAAATTCGACAAGTATGGGCTCATAATCTCGAACCAGAATTTCAACTTATT
TCAACTGTGATTGATAACTACCCTTACATATCTATGGATACTGAGTTTCCTGGGGTTGTTTTCAAGCCTAACGTTTCCTACAATCCCCCA
TCCGATCAGTATAAGCTCTTGAAGTCTAACGTGGATGTGTTGAATCTCATACAGCTTGGGTTAACTTTATCTGACGCGGAAGGTAACCTA
CCTGGTTTAGGATCTGACGGAGGCGGCTACATATGGCAGTTCAATTTCTCCGATTTCGATGTGGAGCGTGATCTCTACGCTCCGGATTCC
ATCGAGTTACTCCGCCGACAGGGGATCGACTTTGAAATGAACCGGGAATGCGGGATCAACTCAGCCCGGTTCACTGAACTGATGATGTCG
TCCGGTTTGGTTTGTAATGAATCGGTGAGTTGGGTTACGTTTCACAGCGCGTATGATTTCGGTTACCTGGTGAAGATACTCACGCGCCGG
GAACTCCCCGGTGGATTAGAGGAGTTTATGGAAGTCGTGAGGGTGTTTTTTGGAAATAAAGTTTATGATATGAAGCATTTGATGAGATTC
TGTAATAGCCTTTATGGTGGTTTAGACCGGCTTGCGAAGACATTGTCCGTGGACCGGGCGGTCGGAAAATGTCACCAGGCCGGTTCAGAT
AGCTTGCTGACGTGGCATGCGTTTCAGAAAATGAGGGATATTTATTTTGTGAATAACGGAGCAGAAAGACATGCTGGCGTCTTGTATGGA
TTAGAAGTTAATTAATTATTAGTAAATAAAAGCTATTTCATTTATTCTTTTAAGCTGAAAATATTGTTTTTCATGACTTTTAATTTTAAT
AATAGCTAATAGAAGAGGAAATACTCATATTTTCAAGCTAATTACAAACTCACCGATTCTCAATTCTAATTTTAATTTATTTGGTTCAAA
ATAATTATTAAATTATTAATTTAATCTTTGAAACTATTGACAACCTTGAATACCTATTTACTTGACTCTAGACGTAAATACATTTTGATG
AGTAACCTGTCAATAATCAAAA

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (10)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum lycopersicum	FA	Fruit Mixture of Immature green, mature green, breaker, turning, and red ripe stages	13933	1
Solanum lycopersicum	FC	Fruit Mixture of mature green, light green, breaker, turning, light red, and red ripe stages	8046	1
Solanum lycopersicum	TUS	Rearrayed collection of L. esculentum cDNA clones	37722	2
Solanum lycopersicum	cLEC	combined undifferentiated and shooting callus 7-10 days post germination	14114	9
Solanum lycopersicum	cLED	ovary 5 days pre-anthesis to 5 days post-anthesis	9878	2
Solanum lycopersicum	cLEG	fruit pericarp breaker fruit	15207	3
Solanum lycopersicum	cLES	leaf 4 weeks	5243	2
Solanum lycopersicum	cLEX	root fruit-set stage/post-fruit loading	3142	1
Solanum lycopersicum	cLEZ	root germinating seedlings	2373	1
Solanum lycopersicum	cTOF	shoot developing shoots from 4-6wks old plants	9122	2

mRNA member sequences (24)

To view details for a particular member sequence, click the SGN-E# identifier.
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Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (3)

Family Build (I value*)	Family ID	Annotation**	# Members
1.1	101793	Ribonuclease CAF1 - Cellular Component: nucleus (GO:0005634) - Biological Process: negative regulation of transcription (GO:0016481) - Molecular Function: transcriptional repressor activity (GO:0016564) Polynucleotidyl transferase Ribonuclease H fold	36
2	118679	Polynucleotidyl transferase Ribonuclease H fold Ribonuclease CAF1 - Cellular Component: nucleus (GO:0005634) - Biological Process: negative regulation of transcription (GO:0016481) - Molecular Function: transcriptional repressor activity (GO:0016564)	36
5	129187	Polynucleotidyl transferase Ribonuclease H fold Ribonuclease CAF1 - Cellular Component: nucleus (GO:0005634) - Biological Process: negative regulation of transcription (GO:0016481) - Molecular Function: transcriptional repressor activity (GO:0016564)	32

Preceding Unigenes (1)

Unigene	Build
SGN-U215603	Lycopersicon Combined #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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