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Unigene SGN-U200248

Unigene Basic Information

Unigene ID:	SGN-U200248
Unigene Build:	Capsicum annuum #1
Date:	2003-12-15
Organism:	C.annuum
Alternative ID:	200248
mRNA sequence:	Length: 325 bp

>SGN-U200248 Capsicum annuum #1 (1 members)
AAAATGGCAGTTGTGATAATCGATGGATCAACAGTTCGAGACTTTGTTTACAACGAAGAAGCATTCACAAAGGCAATAGATAAAGGATTT
ACCGATTTAGACCTCAATAACGACGGCGTTTTATCCCGATCGGAGCTTCGTAAAGCGTTCGAGTCTCTCCGGCTCATCGAATCTCACTTC
GGCGTGGACGTCGCTGCTACGCCGGAGGAACTCACTAACCTCTACGATTCGATGTTCGAGAAATTCGATTGCGATCACAACGGCACGGTG
GATAGGGAGGAGTTTGGGAATGACATGAGGAAAATTATGCTGGCCATCGCTGATG

[Blast] [AA Translation]

Associated Loci (0)

None

Genomic locations (0)

None

Library representation (1)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Capsicum annuum	KS01	leave	6599	1

mRNA member sequences (1)

To view details for a particular member sequence, click the SGN-E# identifier.
[Hide Image]

Markers Information (1)

Unigene Mapped Marker Information

No member sequence or clone is mapped.

COSII Markers Information

COSII marker C2_At2g44310 was created with this unigene.

Expression Data (0)

No expression data was found associated to this unigene

Annotations (manual: 0 | blast: 2 | go: 1 )

Manual annotations

None manual annotation was found for this unigene

Blast Annotations [Show All]

Database	Program	Best Match	Score	E-value	Identity	Alignment Length	Frame
genbank	blastx	gi\|18406507\|ref\|NP_566015.1\|	152.1	1.6e-36	70.09	321 bp (98.8%)	1
Description:	calcium-binding EF hand family protein [Arabidopsis thaliana] >gi3128177\|gb\|AAC16081.1\| express…
arabidopsis	blastx	At2g44310.1	152.1	4.1e-38	70.09	321 bp (98.8%)	1
Description:	At2g44310.1 68409.m04981 calcium-binding EF-hand family protein contains INTERPRO:IPR002048 cal…
swissprot	blastx	No significant hits ( or none blast was used over this dataset )

GO Terms Annotations

GO:0005509 calcium ion binding

Protein prediction analysis (2)

Prediction based on longest six frame method

>SGN-P154277 (108 Aa)

KMAVVIIDGSTVRDFVYNEEAFTKAIDKGFTDLDLNNDGVLSRSELRKAFESLRLIESHFGVDVAATPEELTNLYDSMFEKFDCDHNGTV
DREEFGNDMRKIMLAIAD

SignalP predicts non-secretion with a score of 0.038

No InterPro domain matches or not analyzed.

Prediction based on ESTScan [ Show ESTScan Detail]

>SGN-P34789 (108 Aa)

MAVVIIDGSTVRDFVYNEEAFTKAIDKGFTDLDLNNDGVLSRSELRKAFESLRLIESHFGVDVAATPEELTNLYDSMFEKFDCDHNGTVD
REEFGNDMRKIMLAIADX

SignalP predicts non-secretion with a score of 0.099

IPR002048 Calcium-binding EF-hand

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	724	EF-hand	26
2	23841	EF-hand	10
5	58815	EF-hand	7
1.1	102100	Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509)	22
2	120716	Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	8
5	131892	Calcium-binding EF-hand - Molecular Function: calcium ion binding (GO:0005509) EF-Hand type - Molecular Function: calcium ion binding (GO:0005509)	6

*i value: controls inflation, a process to dissipate family clusters. At high i value, genes tend to be separated into different families.
**Annotation: the most common InterPro annotation(s) of the Arabidopsis members in the family.

Preceding Unigenes (0)

None

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