Sol Genomics Network

Unigene SGN-U269352

Unigene Basic Information

Unigene ID:	SGN-U269352
Unigene Build:	Solanum tuberosum #4
Date:	2005-05-04
Organism:	S.tuberosum
Alternative ID:	269352
mRNA sequence:	Length: 1340 bp

>SGN-U269352 Solanum tuberosum #4 (32 members)
AAAATATCAGACCAACTATATAATAAAGTATAATACAGTGAACTGATATATATTAAAATAAAGGGATAAAAAATTGTTCATATCAGATTC
ACATTCTTCTTCAACTCTGCTTCAAATCTATTAATTTTTCCAATGAATTGCCTTCAGAATCTTCCCAGATCCTCTGGTTTACCACTGAGA
AGCTTCACAGGCAATTCAAGAAAGCCTTTTTCCACTGTTGTTTCACTGGGGATGACAAAATTTGCTGATCAGCGTCTAAGTATTGTGGCA
CAGGTTGTATCTGGTCCTGAATCTAGTACAGAGAAGGATGAGGAAAAATCCGATACATACAGTCATGACATGACTGCAGCTATGGGAGCT
GTCTTGACTTATAGGCATGACTTAGGAATGAACTACAACTTCATCCGTCCGGATTTGATTGTTGGGTCATGTCTACAGACTCCTGAGGAT
GTGGACAAGCTTCGGAGCATTGGAGTAAAAACTATATTTTGCTTGCAACAAAATCCAGATCTCGAATACTTTGGGGTTGATATCAATGCT
ATTCGTGAATATGCCAACAAATGTGGTGATATTGAACACTTGCGTGCCGAAATAAGGGATTTTGATGCATTTGATTTGAGGTTGCGGCTT
CCAGCTGTAATAAGCATACTGAACAATGCCATCAATAGAAATGGAGGTGTGACTTACATACACTGCACAGCTGGACTTGGCAGAGCTCCC
GCAGTTGCGTTGACATATATGTTCTGGGTTCAAAGCTATAAGCTTAGTGAAGCTTTTGATTTACTCATGAGCAAACGCTCCTGCTTTCCG
AAACTTGATGCCATCAAAAGTGCCACAGCAGACATTCTTACAGGCCTTAAAAAGATGCCCGTCACGTTGACATGGCATGGTGATAATTGT
ACTACAGTGGAAATATCTGGGCTTGATATTGGCTGGGGCCAGAGAACACCTTTAAAGTTTGACGAGGAACGAGGTTTGTGGACTCTCCAG
AAGGATTTGCATGAAGGAAAATATGAATACAAGTACATTGTTGACGGGGAATGGATATGCAACGAGTTCGAGCCAATCACTTCTCCCAAC
AAAGATGGACATGTCAACAACTATGTAGAGGTTCTTGACGAAAATCCAGACAACATCACTAGTGCAGCAGTACGAAAGAGGCTCACCGGT
GATGACCCTGATCTTACCTCAGACGAAAGGCTCATAATCGAACAATTTCTCGAAGCTTATGCAGACGTAGAATGAAGGAATACTTATTAC
TTACTATACACTTAATAATTGTAAGCAAAGCCAATAATCTGCTATATAACTCATGCAGTTGTAATCAGTATGCAGTTTTA

[Blast] [AA Translation]

Associated Loci (1)

Locus symbol	Locus name	Gene activity
DQ241838	protein tyrosine phosphatase	protein tyrosine phosphatase

Genomic locations (0)

None

Library representation (13)

Organism	Library	Description	Library size (#ESTs)	Ests in this Unigene
Solanum tuberosum	ACDA	Tubers	5977	1
Solanum tuberosum	CSCH	Tubers	5038	2
Solanum tuberosum	IVROOT	Root	5850	1
Solanum tuberosum	STM	mixed tissues	14805	4
Solanum tuberosum	STOL	Stolon	6462	1
Solanum tuberosum	SWST	Stolon	5942	5
Solanum tuberosum	TBSK	Tuber Skin	4812	1
Solanum tuberosum	TUBS	Tubers	5976	2
Solanum tuberosum	cPRO	roots in vitro grown stem cuttings	10187	4
Solanum tuberosum	cSTA	Axillary buds of stemp explants; swelling stolons; growing stolons; growing sink-tubers 1 to 3 days (plates 1-20), 4 to 6 days (plates 21-40), 7 to 10 days (plates 41-60)	10537	3
Solanum tuberosum	cSTB	leaves and petioles 8 weeks old plants	10327	1
Solanum tuberosum	cSTD	dormant tuber one month post harvest	5045	4
Solanum tuberosum	cSTE	periderm and subperiderm 24 and 48 hour, and 5 and 7 day	5425	3

mRNA member sequences (32)

Alignment image suppressed for unigene with 32 aligned sequences.
[Show Image]

Markers Information (0)

Expression Data (0)

Annotations (manual: 0 | blast: 2 | go: 3 )

Protein prediction analysis (2)

Gene Family (6)

Family Build (I value*)	Family ID	Annotation**	# Members
1.2	239	DS_phosphatase AMPKBI	64
2	23570	DS_phosphatase TYR_phosphatase	12
5	59620	DS_phosphatase MuDR Glyco_hydro_13N TYR_phosphatase	6
1.1	101587	5-AMP-activated protein kinase beta subunit complex-interacting region Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138)	67
2	121769	Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138) Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	6
5	132702	Dual specificity protein phosphatase - Biological Process: protein amino acid dephosphorylation (GO:0006470) - Molecular Function: protein tyrosine/serine/threonine phosphatase activity (GO:0008138) Tyrosine specific protein phosphatase and dual specificity protein phosphatase - Molecular Function: phosphoprotein phosphatase activity (GO:0004721) - Biological Process: protein amino acid dephosphorylation (GO:0006470)	5

Preceding Unigenes (1)

Unigene	Build
SGN-U244069	Solanum tuberosum #3

Accessions	Seedlots
Accessions		Breeding Program	Seedlot Name	Contents	Seedlot Location	Count	Weight(g)

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