| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|225436884|ref|XP_002271258.1| |
score: 367 |
e-value: 2e-114 |
Identity: 80.36% |
Span: 669bp (68.1%) |
Frame: 3 |
| PREDICTED: hypothetical protein [Vitis vinifera] |
| Match: gi|270244940|emb|CBI32318.1| |
score: 367 |
e-value: 4e-114 |
Identity: 80.36% |
Span: 669bp (68.1%) |
Frame: 3 |
| unnamed protein product [Vitis vinifera] |
| Match: gi|224072941|ref|XP_002303939.1| |
score: 352 |
e-value: 1e-109 |
Identity: 75.77% |
Span: 678bp (69.0%) |
Frame: 3 |
| predicted protein [Populus trichocarpa] >gi222841371|gb|EEE78918.1| predicted protein [Populus trichocarpa] |
| Match: gi|242074666|ref|XP_002447269.1| |
score: 349 |
e-value: 2e-106 |
Identity: 78.48% |
Span: 666bp (67.8%) |
Frame: 3 |
| hypothetical protein SORBIDRAFT_06g031660 [Sorghum bicolor] >gi241938452|gb|EES11597.1| hypothetical protein SORBIDRA... |
| Match: gi|217074186|gb|ACJ85453.1| |
score: 348 |
e-value: 4e-108 |
Identity: 74.45% |
Span: 678bp (69.0%) |
Frame: 3 |
| unknown [Medicago truncatula] |
| Match: gi|115459464|ref|NP_001053332.1| |
score: 346 |
e-value: 3e-106 |
Identity: 78.48% |
Span: 666bp (67.8%) |
Frame: 3 |
| Os04g0520000 [Oryza sativa (japonica cultivar-group)] >gi21741863|emb|CAD41453.1| OSJNBa0019D11.5 [Oryza sativa (japo... |
| Match: gi|255567640|ref|XP_002524799.1| |
score: 343 |
e-value: 4e-107 |
Identity: 74.56% |
Span: 678bp (69.0%) |
Frame: 3 |
| rrp4, putative [Ricinus communis] >gi223535983|gb|EEF37642.1| rrp4, putative [Ricinus communis] |
| Match: gi|194704246|gb|ACF86207.1| |
score: 342 |
e-value: 7e-104 |
Identity: 76.68% |
Span: 666bp (67.8%) |
Frame: 3 |
| unknown [Zea mays] |
| Match: gi|15218790|ref|NP_171835.1| |
score: 341 |
e-value: 6e-92 |
Identity: 72.25% |
Span: 678bp (69.0%) |
Frame: 3 |
| ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease [Arabidopsis thaliana] >gi3850568... |
| Match: gi|222619320|gb|EEE55452.1| |
score: 339 |
e-value: 2e-104 |
Identity: 76.68% |
Span: 666bp (67.8%) |
Frame: 3 |
| hypothetical protein OsJ_03610 [Oryza sativa Japonica Group] |
| Match: gi|219363297|ref|NP_001136723.1| |
score: 265 |
e-value: 8e-69 |
Identity: 76.84% |
Span: 528bp (53.7%) |
Frame: 3 |
| hypothetical protein LOC100216860 [Zea mays] >gi194696768|gb|ACF82468.1| unknown [Zea mays] |
| Match: gi|168019913|ref|XP_001762488.1| |
score: 238 |
e-value: 4e-69 |
Identity: 50.42% |
Span: 651bp (66.2%) |
Frame: 3 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162686221|gb|EDQ72611.1| predicted protein [Physcomitrella... |
| Match: gi|159488815|ref|XP_001702398.1| |
score: 209 |
e-value: 3e-54 |
Identity: 51.94% |
Span: 600bp (61.0%) |
Frame: 3 |
| hypothetical protein CHLREDRAFT_108094 [Chlamydomonas reinhardtii] >gi158271192|gb|EDO97018.1| predicted protein [Chl... |
| Match: gi|225436884|ref|XP_002271258.1| |
score: 72 |
e-value: 2e-114 |
Identity: 51.76% |
Span: 246bp (25.0%) |
Frame: 1 |
| PREDICTED: hypothetical protein [Vitis vinifera] |
| Match: gi|15218790|ref|NP_171835.1| |
score: 72 |
e-value: 1e-10 |
Identity: 46.07% |
Span: 249bp (25.3%) |
Frame: 1 |
| ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease [Arabidopsis thaliana] >gi3850568... |
| Match: gi|224072941|ref|XP_002303939.1| |
score: 71.2 |
e-value: 1e-109 |
Identity: 48.78% |
Span: 246bp (25.0%) |
Frame: 1 |
| predicted protein [Populus trichocarpa] >gi222841371|gb|EEE78918.1| predicted protein [Populus trichocarpa] |
| Match: gi|270244940|emb|CBI32318.1| |
score: 70.9 |
e-value: 4e-114 |
Identity: 48.78% |
Span: 246bp (25.0%) |
Frame: 1 |
| unnamed protein product [Vitis vinifera] |
| Match: gi|255567640|ref|XP_002524799.1| |
score: 70.9 |
e-value: 4e-107 |
Identity: 47.56% |
Span: 246bp (25.0%) |
Frame: 1 |
| rrp4, putative [Ricinus communis] >gi223535983|gb|EEF37642.1| rrp4, putative [Ricinus communis] |
| Match: gi|217074186|gb|ACJ85453.1| |
score: 70.1 |
e-value: 4e-108 |
Identity: 47.62% |
Span: 246bp (25.0%) |
Frame: 1 |
| unknown [Medicago truncatula] |
| Match: gi|222619320|gb|EEE55452.1| |
score: 65.9 |
e-value: 2e-104 |
Identity: 41.67% |
Span: 252bp (25.6%) |
Frame: 1 |
| hypothetical protein OsJ_03610 [Oryza sativa Japonica Group] |
| Match: gi|115459464|ref|NP_001053332.1| |
score: 65.9 |
e-value: 3e-106 |
Identity: 41.67% |
Span: 252bp (25.6%) |
Frame: 1 |
| Os04g0520000 [Oryza sativa (japonica cultivar-group)] >gi21741863|emb|CAD41453.1| OSJNBa0019D11.5 [Oryza sativa (japo... |
| Match: gi|242074666|ref|XP_002447269.1| |
score: 62.8 |
e-value: 2e-106 |
Identity: 39.29% |
Span: 252bp (25.6%) |
Frame: 1 |
| hypothetical protein SORBIDRAFT_06g031660 [Sorghum bicolor] >gi241938452|gb|EES11597.1| hypothetical protein SORBIDRA... |
| Match: gi|194704246|gb|ACF86207.1| |
score: 61.6 |
e-value: 7e-104 |
Identity: 48.21% |
Span: 168bp (17.1%) |
Frame: 1 |
| unknown [Zea mays] |
| Match: gi|168019913|ref|XP_001762488.1| |
score: 49.7 |
e-value: 4e-69 |
Identity: 41.51% |
Span: 159bp (16.2%) |
Frame: 1 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162686221|gb|EDQ72611.1| predicted protein [Physcomitrella... |
| Match: gi|159488815|ref|XP_001702398.1| |
score: 29.3 |
e-value: 3e-54 |
Identity: 31.91% |
Span: 141bp (14.3%) |
Frame: 1 |
| hypothetical protein CHLREDRAFT_108094 [Chlamydomonas reinhardtii] >gi158271192|gb|EDO97018.1| predicted protein [Chl... |
|
| 198 lower scoring hits censored -- only 25 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 2 hits recorded |
| Match: At1G03360.1 |
score: 341 |
e-value: 4e-94 |
Identity: 72.25% |
Span: 678bp (69.0%) |
Frame: 3 |
| Symbols: ATRRP4 | ATRRP4; exonuclease | chr1:824653-826179 FORWARD |
| Match: At1G03360.1 |
score: 72 |
e-value: 5e-13 |
Identity: 46.07% |
Span: 249bp (25.3%) |
Frame: 1 |
| Symbols: ATRRP4 | ATRRP4; exonuclease | chr1:824653-826179 FORWARD |
|
| swissprot [blastx] | Showing best 7 hits recorded |
| Match: Q09704 |
score: 191 |
e-value: 9e-48 |
Identity: 48.22% |
Span: 591bp (60.1%) |
Frame: 3 |
| Exosome complex component rrp4 OS=Schizosaccharomyces pombe GN=rrp4 PE=2 SV=1 |
| Match: Q8VBV3 |
score: 181 |
e-value: 7e-45 |
Identity: 46.54% |
Span: 651bp (66.2%) |
Frame: 3 |
| Exosome complex exonuclease RRP4 OS=Mus musculus GN=Exosc2 PE=2 SV=1 |
| Match: Q2KID0 |
score: 177 |
e-value: 1e-43 |
Identity: 46.08% |
Span: 651bp (66.2%) |
Frame: 3 |
| Exosome complex exonuclease RRP4 OS=Bos taurus GN=EXOSC2 PE=2 SV=1 |
| Match: Q13868 |
score: 176 |
e-value: 3e-43 |
Identity: 45.62% |
Span: 651bp (66.2%) |
Frame: 3 |
| Exosome complex exonuclease RRP4 OS=Homo sapiens GN=EXOSC2 PE=1 SV=2 |
| Match: P38792 |
score: 166 |
e-value: 2e-40 |
Identity: 44.21% |
Span: 570bp (58.0%) |
Frame: 3 |
| Exosome complex component RRP4 OS=Saccharomyces cerevisiae GN=RRP4 PE=1 SV=1 |
| Match: Q5JIR5 |
score: 73.6 |
e-value: 2e-12 |
Identity: 29.07% |
Span: 495bp (50.4%) |
Frame: 3 |
| Probable exosome complex RNA-binding protein 1 OS=Pyrococcus kodakaraensis GN=TK1635 PE=3 SV=1 |
| Match: Q8PTT9 |
score: 68.2 |
e-value: 9e-11 |
Identity: 26.34% |
Span: 540bp (54.9%) |
Frame: 3 |
| Probable exosome complex RNA-binding protein 1 OS=Methanosarcina mazei GN=MM_2622 PE=3 SV=1 |
|
