| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|225462725|ref|XP_002268709.1| |
score: 438 |
e-value: 5e-121 |
Identity: 83.58% |
Span: 822bp (83.8%) |
Frame: 2 |
| PREDICTED: hypothetical protein [Vitis vinifera] >gi270233939|emb|CBI22546.1| unnamed protein product [Vitis vinifera] |
| Match: gi|255545052|ref|XP_002513587.1| |
score: 432 |
e-value: 2e-119 |
Identity: 84.62% |
Span: 819bp (83.5%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD, putative [Ricinus communis] >gi223547495|gb|EEF48990.1| RNA polymerase sigma factor... |
| Match: gi|224110206|ref|XP_002333134.1| |
score: 415 |
e-value: 5e-114 |
Identity: 82.05% |
Span: 819bp (83.5%) |
Frame: 2 |
| predicted protein [Populus trichocarpa] >gi222834948|gb|EEE73397.1| predicted protein [Populus trichocarpa] |
| Match: gi|224116898|ref|XP_002331841.1| |
score: 410 |
e-value: 2e-112 |
Identity: 79.85% |
Span: 819bp (83.5%) |
Frame: 2 |
| predicted protein [Populus trichocarpa] >gi222875079|gb|EEF12210.1| predicted protein [Populus trichocarpa] |
| Match: gi|15237896|ref|NP_197800.1| |
score: 399 |
e-value: 3e-109 |
Identity: 77.21% |
Span: 816bp (83.2%) |
Frame: 2 |
| SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor [Arabidopsis tha... |
| Match: gi|222632729|gb|EEE64861.1| |
score: 334 |
e-value: 1e-89 |
Identity: 63.37% |
Span: 819bp (83.5%) |
Frame: 2 |
| hypothetical protein OsJ_19718 [Oryza sativa Japonica Group] |
| Match: gi|125553511|gb|EAY99220.1| |
score: 334 |
e-value: 1e-89 |
Identity: 63.37% |
Span: 819bp (83.5%) |
Frame: 2 |
| hypothetical protein OsI_21178 [Oryza sativa Indica Group] |
| Match: gi|115465727|ref|NP_001056463.1| |
score: 334 |
e-value: 1e-89 |
Identity: 63.37% |
Span: 819bp (83.5%) |
Frame: 2 |
| Os05g0586600 [Oryza sativa (japonica cultivar-group)] >gi30698488|dbj|BAC76601.1| Sig5 [Oryza sativa Japonica Group] ... |
| Match: gi|242089037|ref|XP_002440351.1| |
score: 319 |
e-value: 4e-85 |
Identity: 63.5% |
Span: 819bp (83.5%) |
Frame: 2 |
| hypothetical protein SORBIDRAFT_09g030110 [Sorghum bicolor] >gi241945636|gb|EES18781.1| hypothetical protein SORBIDRA... |
| Match: gi|168029696|ref|XP_001767361.1| |
score: 220 |
e-value: 2e-55 |
Identity: 45.05% |
Span: 816bp (83.2%) |
Frame: 2 |
| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens] >gi56603661|dbj|BAD80742.1| plastid sigma factor PpSI... |
| Match: gi|186686393|ref|YP_001869589.1| |
score: 142 |
e-value: 8e-32 |
Identity: 36.26% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102] >gi8118663|gb|AAF73062.1|AF265349_1 primary vegetativ... |
| Match: gi|254416030|ref|ZP_05029786.1| |
score: 141 |
e-value: 1e-31 |
Identity: 35.16% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase sigma factor, cyanobacterial RpoD-like family [Microcoleus chthonoplastes PCC 7420] >gi196177205|gb|ED... |
| Match: gi|254424042|ref|ZP_05037760.1| |
score: 141 |
e-value: 1e-31 |
Identity: 35.07% |
Span: 795bp (81.0%) |
Frame: 2 |
| RNA polymerase sigma factor, cyanobacterial RpoD-like family [Synechococcus sp. PCC 7335] >gi196191531|gb|EDX86495.1|... |
| Match: gi|218438948|ref|YP_002377277.1| |
score: 141 |
e-value: 1e-31 |
Identity: 34.8% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 7424] >gi218171676|gb|ACK70409.1| RNA polymerase... |
| Match: gi|17232755|ref|NP_489303.1| |
score: 140 |
e-value: 2e-31 |
Identity: 35.9% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120] >gi75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD ... |
| Match: gi|196254343|ref|ZP_03152882.1| |
score: 140 |
e-value: 2e-31 |
Identity: 34.43% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase, sigma 70 subunit, RpoD family [Cyanothece sp. PCC 7822] >gi196203540|gb|EDX98356.1| RNA polymerase, s... |
| Match: gi|218245044|ref|YP_002370415.1| |
score: 139 |
e-value: 4e-31 |
Identity: 34.94% |
Span: 804bp (82.0%) |
Frame: 2 |
| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 8801] >gi257058068|ref|YP_003135956.1| RNA polym... |
| Match: gi|170078618|ref|YP_001735256.1| |
score: 139 |
e-value: 4e-31 |
Identity: 35.96% |
Span: 798bp (81.3%) |
Frame: 2 |
| RNA polymerase sigma factor [Synechococcus sp. PCC 7002] >gi558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] >... |
| Match: gi|1588486|prf||2208419B |
score: 139 |
e-value: 4e-31 |
Identity: 35.96% |
Span: 798bp (81.3%) |
Frame: 2 |
| RNA polymerase sigma factor |
| Match: gi|254424926|ref|ZP_05038644.1| |
score: 139 |
e-value: 5e-31 |
Identity: 34.43% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase sigma factor, cyanobacterial RpoD-like family [Synechococcus sp. PCC 7335] >gi196192415|gb|EDX87379.1|... |
| Match: gi|282899714|ref|ZP_06307678.1| |
score: 139 |
e-value: 7e-31 |
Identity: 36.13% |
Span: 819bp (83.5%) |
Frame: 2 |
| sigA (Sigma 28 (Flagella/Sporulation)) [Cylindrospermopsis raciborskii CS-505] >gi281195593|gb|EFA70526.1| sigA (Sigm... |
| Match: gi|282896628|ref|ZP_06304643.1| |
score: 138 |
e-value: 9e-31 |
Identity: 36.13% |
Span: 819bp (83.5%) |
Frame: 2 |
| sigA (Sigma 28 (Flagella/Sporulation)) [Raphidiopsis brookii D9] >gi281198498|gb|EFA73384.1| sigA (Sigma 28 (Flagella... |
| Match: gi|119512308|ref|ZP_01631394.1| |
score: 137 |
e-value: 2e-30 |
Identity: 35.53% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase sigma factor [Nodularia spumigena CCY9414] >gi119463021|gb|EAW43972.1| RNA polymerase sigma factor [No... |
| Match: gi|284052417|ref|ZP_06382627.1| |
score: 136 |
e-value: 3e-30 |
Identity: 34.83% |
Span: 798bp (81.3%) |
Frame: 2 |
| RNA polymerase sigma factor RpoD [Arthrospira platensis str. Paraca] |
| Match: gi|209523577|ref|ZP_03272131.1| |
score: 136 |
e-value: 3e-30 |
Identity: 34.83% |
Span: 798bp (81.3%) |
Frame: 2 |
| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima CS-328] >gi209495982|gb|EDZ96283.1| RNA polymerase,... |
|
| 225 lower scoring hits censored -- only 25 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 6 hits recorded |
| Match: At5G24120.1 |
score: 399 |
e-value: 1e-111 |
Identity: 77.21% |
Span: 816bp (83.2%) |
Frame: 2 |
| Symbols: SIG5, SIGE | SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor... |
| Match: At1G08540.1 |
score: 119 |
e-value: 4e-27 |
Identity: 32.71% |
Span: 801bp (81.7%) |
Frame: 2 |
| Symbols: SIGA, SIG2, SIGB | SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor |... |
| Match: At2G36990.1 |
score: 118 |
e-value: 6e-27 |
Identity: 31.87% |
Span: 813bp (82.9%) |
Frame: 2 |
| Symbols: SIG6, SIGF | SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcriptio... |
| Match: At1G64860.1 |
score: 87 |
e-value: 2e-17 |
Identity: 29.67% |
Span: 792bp (80.7%) |
Frame: 2 |
| Symbols: SIG1, SIG2, SIGB, RPOD1, SIGA | SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ transcrip... |
| Match: At5G13730.1 |
score: 83.2 |
e-value: 2e-16 |
Identity: 30.17% |
Span: 711bp (72.5%) |
Frame: 2 |
| Symbols: SIGD, SIG4 | SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor | chr5:... |
| Match: At3G53920.1 |
score: 70.1 |
e-value: 2e-12 |
Identity: 26.34% |
Span: 774bp (78.9%) |
Frame: 2 |
| Symbols: SIG3, SIGC | SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcriptio... |
|
| swissprot [blastx] | Showing best 25 hits recorded |
| Match: P26683 |
score: 140 |
e-value: 1e-32 |
Identity: 35.9% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1 |
| Match: P38023 |
score: 134 |
e-value: 1e-30 |
Identity: 34.43% |
Span: 816bp (83.2%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2 |
| Match: P74565 |
score: 129 |
e-value: 3e-29 |
Identity: 33.58% |
Span: 819bp (83.5%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1 |
| Match: P17531 |
score: 125 |
e-value: 3e-28 |
Identity: 30.66% |
Span: 780bp (79.5%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Myxococcus xanthus GN=rpoD PE=3 SV=1 |
| Match: P52322 |
score: 124 |
e-value: 1e-27 |
Identity: 35.12% |
Span: 723bp (73.7%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1 |
| Match: Q9Z7F0 |
score: 124 |
e-value: 1e-27 |
Identity: 30.86% |
Span: 798bp (81.3%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Chlamydia pneumoniae GN=rpoD PE=3 SV=1 |
| Match: Q59996 |
score: 123 |
e-value: 2e-27 |
Identity: 33.72% |
Span: 771bp (78.6%) |
Frame: 2 |
| Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain PCC 6803) GN=sigC PE=3 SV=1 |
| Match: P26480 |
score: 122 |
e-value: 3e-27 |
Identity: 27.61% |
Span: 771bp (78.6%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Pseudomonas aeruginosa GN=rpoD PE=3 SV=1 |
| Match: Q89B10 |
score: 122 |
e-value: 4e-27 |
Identity: 31.52% |
Span: 753bp (76.8%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpoD PE=3 SV=1 |
| Match: P46400 |
score: 122 |
e-value: 5e-27 |
Identity: 31.27% |
Span: 753bp (76.8%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus GN=rpoD PE=2 SV=1 |
| Match: Q59753 |
score: 122 |
e-value: 5e-27 |
Identity: 31.34% |
Span: 777bp (79.2%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Rhizobium meliloti GN=rpoD PE=3 SV=1 |
| Match: P52324 |
score: 121 |
e-value: 7e-27 |
Identity: 30.08% |
Span: 744bp (75.8%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Caulobacter crescentus GN=rpoD PE=3 SV=1 |
| Match: P56835 |
score: 121 |
e-value: 9e-27 |
Identity: 29.85% |
Span: 798bp (81.3%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Chlamydia muridarum GN=rpoD PE=3 SV=1 |
| Match: P33452 |
score: 120 |
e-value: 1e-26 |
Identity: 32% |
Span: 744bp (75.8%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2 |
| Match: O24744 |
score: 120 |
e-value: 1e-26 |
Identity: 29.62% |
Span: 744bp (75.8%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Shewanella violacea GN=rpoD PE=3 SV=1 |
| Match: P18333 |
score: 120 |
e-value: 2e-26 |
Identity: 29.85% |
Span: 798bp (81.3%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Chlamydia trachomatis GN=rpoD PE=3 SV=2 |
| Match: P57163 |
score: 120 |
e-value: 2e-26 |
Identity: 29.45% |
Span: 780bp (79.5%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpoD PE=3 SV=1 |
| Match: P52326 |
score: 119 |
e-value: 2e-26 |
Identity: 27.38% |
Span: 756bp (77.1%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Pseudomonas fluorescens GN=rpoD PE=3 SV=1 |
| Match: P43766 |
score: 119 |
e-value: 2e-26 |
Identity: 29.58% |
Span: 714bp (72.8%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Haemophilus influenzae GN=rpoD PE=3 SV=1 |
| Match: P32001 |
score: 119 |
e-value: 2e-26 |
Identity: 29.66% |
Span: 753bp (76.8%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpoD PE=3 SV=1 |
| Match: P0A2E3 |
score: 119 |
e-value: 3e-26 |
Identity: 29.45% |
Span: 780bp (79.5%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Salmonella typhimurium GN=rpoD PE=3 SV=1 |
| Match: P0A2E4 |
score: 119 |
e-value: 3e-26 |
Identity: 29.45% |
Span: 780bp (79.5%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Salmonella typhi GN=rpoD PE=3 SV=1 |
| Match: P77994 |
score: 119 |
e-value: 4e-26 |
Identity: 33.61% |
Span: 705bp (71.9%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Thermotoga maritima GN=rpoD PE=1 SV=3 |
| Match: P00579 |
score: 118 |
e-value: 6e-26 |
Identity: 29.45% |
Span: 780bp (79.5%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Escherichia coli (strain K12) GN=rpoD PE=1 SV=2 |
| Match: P33656 |
score: 118 |
e-value: 6e-26 |
Identity: 31.78% |
Span: 750bp (76.5%) |
Frame: 2 |
| RNA polymerase sigma factor rpoD OS=Clostridium acetobutylicum GN=rpoD PE=3 SV=1 |
|
| 71 lower scoring hits censored -- only 25 best hits are stored. |
