| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|15237896|ref|NP_197800.1| |
score: 399.1 |
e-value: 5e-110 |
Identity: 65.76% |
Span: 882bp (93.5%) |
Frame: 1 |
| SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor [Arabidopsis tha... |
| Match: gi|30698488|dbj|BAC76601.1| |
score: 321.6 |
e-value: 1e-86 |
Identity: 56.88% |
Span: 807bp (85.6%) |
Frame: 1 |
| gi|30698488|dbj|BAC76601.1| Sig5 [Oryza sativa (japonica cultivar-group)] gi|30698518|dbj|BAC76607.1| plastid sigma f... |
| Match: gi|15010718|gb|AAK74018.1| |
score: 148.3 |
e-value: 1.5e-34 |
Identity: 59.02% |
Span: 363bp (38.5%) |
Frame: 1 |
| AT5g24120/MLE8_4 [Arabidopsis thaliana] |
| Match: gi|16331222|ref|NP_441950.1| |
score: 115.9 |
e-value: 8.3e-25 |
Identity: 32.58% |
Span: 660bp (70.0%) |
Frame: 1 |
| gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434780|pir||S76042 transcri... |
| Match: gi|23126139|ref|ZP_00108045.1| |
score: 115.9 |
e-value: 8.3e-25 |
Identity: 31.25% |
Span: 717bp (76.0%) |
Frame: 1 |
| gi|23126139|ref|ZP_00108045.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|23128624|ref|ZP_00110467.1| |
score: 111.3 |
e-value: 2e-23 |
Identity: 32.54% |
Span: 753bp (79.9%) |
Frame: 1 |
| gi|23128624|ref|ZP_00110467.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|17233195|ref|NP_490285.1| |
score: 110.9 |
e-value: 2.7e-23 |
Identity: 30.16% |
Span: 753bp (79.9%) |
Frame: 1 |
| gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120] gi|25288483|pir||AC2500 group 2... |
| Match: gi|37523331|ref|NP_926708.1| |
score: 109.4 |
e-value: 7.8e-23 |
Identity: 30.04% |
Span: 756bp (80.2%) |
Frame: 1 |
| gi|37523331|ref|NP_926708.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35214335|dbj|BAC91703.1| g... |
| Match: gi|558881|gb|AAB41506.1| |
score: 109 |
e-value: 1e-22 |
Identity: 30.8% |
Span: 708bp (75.1%) |
Frame: 1 |
| gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] |
| Match: gi|1588486|prf||2208419B |
score: 109 |
e-value: 1e-22 |
Identity: 30.8% |
Span: 708bp (75.1%) |
Frame: 1 |
| RNA polymerase sigma factor |
| Match: gi|23040008|ref|ZP_00071540.1| |
score: 108.2 |
e-value: 1.7e-22 |
Identity: 31.6% |
Span: 633bp (67.1%) |
Frame: 1 |
| gi|23040008|ref|ZP_00071540.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Trichodesmium e... |
| Match: gi|23130601|ref|ZP_00112414.1| |
score: 107.5 |
e-value: 3e-22 |
Identity: 27.87% |
Span: 726bp (77.0%) |
Frame: 1 |
| gi|23130601|ref|ZP_00112414.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|23128093|ref|ZP_00109949.1| |
score: 106.7 |
e-value: 5e-22 |
Identity: 30.38% |
Span: 708bp (75.1%) |
Frame: 1 |
| gi|23128093|ref|ZP_00109949.1| hypothetical protein [Nostoc punctiforme] gi|8118663|gb|AAF73062.1| primary vegetative... |
| Match: gi|23127707|ref|ZP_00109570.1| |
score: 106.3 |
e-value: 6.6e-22 |
Identity: 30.7% |
Span: 642bp (68.1%) |
Frame: 1 |
| gi|23127707|ref|ZP_00109570.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|17232755|ref|NP_489303.1| |
score: 105.5 |
e-value: 1.1e-21 |
Identity: 30.38% |
Span: 708bp (75.1%) |
Frame: 1 |
| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120] >gi75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD ... |
| Match: gi|12697780|dbj|BAB21618.1| |
score: 105.1 |
e-value: 1.5e-21 |
Identity: 31.94% |
Span: 570bp (60.4%) |
Frame: 1 |
| gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens] gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens] |
| Match: gi|22297808|ref|NP_681055.1| |
score: 105.1 |
e-value: 1.5e-21 |
Identity: 28.7% |
Span: 687bp (72.9%) |
Frame: 1 |
| gi|22297808|ref|NP_681055.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22293985|dbj|... |
| Match: gi|23040369|ref|ZP_00071885.1| |
score: 105.1 |
e-value: 1.5e-21 |
Identity: 31.55% |
Span: 615bp (65.2%) |
Frame: 1 |
| gi|23040369|ref|ZP_00071885.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Trichodesmium e... |
| Match: gi|23128585|ref|ZP_00110428.1| |
score: 104.8 |
e-value: 1.9e-21 |
Identity: 29.55% |
Span: 738bp (78.3%) |
Frame: 1 |
| gi|23128585|ref|ZP_00110428.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|1769413|dbj|BAA13122.1| |
score: 104.8 |
e-value: 1.9e-21 |
Identity: 31.31% |
Span: 636bp (67.4%) |
Frame: 1 |
| gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa] |
| Match: gi|19910024|dbj|BAB87263.1| |
score: 104.4 |
e-value: 2.5e-21 |
Identity: 35.45% |
Span: 561bp (59.5%) |
Frame: 1 |
| gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa] |
| Match: gi|23039887|ref|ZP_00071426.1| |
score: 103.6 |
e-value: 4.3e-21 |
Identity: 29.27% |
Span: 720bp (76.4%) |
Frame: 1 |
| gi|23039887|ref|ZP_00071426.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Trichodesmium e... |
| Match: gi|22298374|ref|NP_681621.1| |
score: 103.6 |
e-value: 4.3e-21 |
Identity: 32.52% |
Span: 615bp (65.2%) |
Frame: 1 |
| gi|22298374|ref|NP_681621.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22294553|dbj... |
| Match: gi|1769590|gb|AAB95227.1| |
score: 103.2 |
e-value: 5.6e-21 |
Identity: 28.97% |
Span: 747bp (79.2%) |
Frame: 1 |
| gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp.] |
| Match: gi|23126581|ref|ZP_00108472.1| |
score: 103.2 |
e-value: 5.6e-21 |
Identity: 28.91% |
Span: 765bp (81.1%) |
Frame: 1 |
| gi|23126581|ref|ZP_00108472.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|4105839|gb|AAD02575.1| |
score: 103.2 |
e-value: 5.6e-21 |
Identity: 36.21% |
Span: 519bp (55.0%) |
Frame: 1 |
| gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor; RpoD2 [Cyanidium caldarium] |
| Match: gi|17231302|ref|NP_487850.1| |
score: 102.8 |
e-value: 7.3e-21 |
Identity: 29.77% |
Span: 642bp (68.1%) |
Frame: 1 |
| gi|17231302|ref|NP_487850.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120] gi|25288482|pir||AC2282 group... |
| Match: gi|217140|dbj|BAA01749.1| |
score: 102.4 |
e-value: 9.5e-21 |
Identity: 29.66% |
Span: 705bp (74.8%) |
Frame: 1 |
| gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus sp.] |
| Match: gi|33863339|ref|NP_894899.1| |
score: 101.7 |
e-value: 1.6e-20 |
Identity: 29% |
Span: 597bp (63.3%) |
Frame: 1 |
| gi|33863339|ref|NP_894899.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|33862400|ref|NP_893960.1| |
score: 101.7 |
e-value: 1.6e-20 |
Identity: 29% |
Span: 597bp (63.3%) |
Frame: 1 |
| gi|33862400|ref|NP_893960.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|7484279|pir||T14364 |
score: 101.3 |
e-value: 2.1e-20 |
Identity: 29.92% |
Span: 720bp (76.4%) |
Frame: 1 |
| gi|7484279|pir||T14364 probable transcription initiation factor sigma A, chloroplast - red alga (Cyanidium caldarium)... |
| Match: gi|23129934|ref|ZP_00111755.1| |
score: 101.3 |
e-value: 2.1e-20 |
Identity: 30.58% |
Span: 615bp (65.2%) |
Frame: 1 |
| gi|23129934|ref|ZP_00111755.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|17231741|ref|NP_488289.1| |
score: 100.9 |
e-value: 2.8e-20 |
Identity: 25.82% |
Span: 726bp (77.0%) |
Frame: 1 |
| gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120] gi|25288487|pir||AB2337 group... |
| Match: gi|97628|pir||S24172 |
score: 100.1 |
e-value: 4.7e-20 |
Identity: 29.66% |
Span: 705bp (74.8%) |
Frame: 1 |
| gi|97628|pir||S24172 transcription initiation factor sigma A - Synechococcus sp |
| Match: gi|17231292|ref|NP_487840.1| |
score: 99.75 |
e-value: 6.2e-20 |
Identity: 30.1% |
Span: 615bp (65.2%) |
Frame: 1 |
| gi|17231292|ref|NP_487840.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120] gi|25288486|pir||AI2280 group... |
| Match: gi|7484278|pir||JC6134 |
score: 98.6 |
e-value: 1.4e-19 |
Identity: 33.68% |
Span: 576bp (61.1%) |
Frame: 1 |
| gi|7484278|pir||JC6134 DNA-directed RNA polymerase (EC 2.7.7.6) sigma chain - red alga (Cyanidium caldarium) gi|97398... |
| Match: gi|17158744|ref|NP_478255.1| |
score: 97.83 |
e-value: 2.3e-19 |
Identity: 29.44% |
Span: 588bp (62.4%) |
Frame: 1 |
| gi|17158744|ref|NP_478255.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120] gi|25288485|pir||AE2540 group 2... |
| Match: gi|1769588|gb|AAB95226.1| |
score: 97.83 |
e-value: 2.3e-19 |
Identity: 28.7% |
Span: 687bp (72.9%) |
Frame: 1 |
| gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp.] |
| Match: gi|25408520|pir||B84787 |
score: 97.44 |
e-value: 3.1e-19 |
Identity: 28.9% |
Span: 651bp (69.0%) |
Frame: 1 |
| gi|25408520|pir||B84787 probable RNA polymerase sigma-70 factor [imported] - Arabidopsis thaliana |
| Match: gi|18404292|ref|NP_565856.1| |
score: 97.44 |
e-value: 3.1e-19 |
Identity: 28.9% |
Span: 651bp (69.0%) |
Frame: 1 |
| SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|23041419|ref|ZP_00072877.1| |
score: 97.44 |
e-value: 3.1e-19 |
Identity: 28.69% |
Span: 708bp (75.1%) |
Frame: 1 |
| gi|23041419|ref|ZP_00072877.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Trichodesmium e... |
| Match: gi|17158751|ref|NP_478262.1| |
score: 97.44 |
e-value: 3.1e-19 |
Identity: 26.72% |
Span: 783bp (83.0%) |
Frame: 1 |
| gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120] gi|464687|sp|Q03065|RPSB_ANA... |
| Match: gi|7434771|pir||T14358 |
score: 97.44 |
e-value: 3.1e-19 |
Identity: 30.81% |
Span: 552bp (58.5%) |
Frame: 1 |
| gi|7434771|pir||T14358 transcription initiation factor sigma B - red alga (Cyanidium caldarium) gi|3077738|dbj|BAA25... |
| Match: gi|25456197|pir||T52653 |
score: 97.44 |
e-value: 3.1e-19 |
Identity: 28.9% |
Span: 651bp (69.0%) |
Frame: 1 |
| gi|25456197|pir||T52653 probable sigma-like transcription initiation factor [imported] - Arabidopsis thaliana (fragme... |
| Match: gi|13812120|ref|NP_113247.1| |
score: 97.06 |
e-value: 4e-19 |
Identity: 33.71% |
Span: 519bp (55.0%) |
Frame: 1 |
| gi|13812120|ref|NP_113247.1| RNA-polymerase sigma factor [Guillardia theta] gi|25288491|pir||D90084 RNA-polymerase si... |
| Match: gi|2145573|pir||S69547 |
score: 96.67 |
e-value: 5.2e-19 |
Identity: 28.29% |
Span: 612bp (64.9%) |
Frame: 1 |
| gi|2145573|pir||S69547 transcription initiation factor sigma 2 - Synechococcus sp. (strain PCC 7942) gi|2385506|dbj|... |
| Match: gi|30698490|dbj|BAC76602.1| |
score: 96.29 |
e-value: 6.8e-19 |
Identity: 31.25% |
Span: 570bp (60.4%) |
Frame: 1 |
| gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|4336610|gb|AAD17856.1| |
score: 95.13 |
e-value: 1.5e-18 |
Identity: 26.92% |
Span: 699bp (74.1%) |
Frame: 1 |
| gi|4336610|gb|AAD17856.1| sigma factor SIG6; ZmSIG6 [Zea mays] |
| Match: gi|7363218|emb|CAB83106.1| |
score: 95.13 |
e-value: 1.5e-18 |
Identity: 27.55% |
Span: 585bp (62.0%) |
Frame: 1 |
| sigma factor 2 [Sinapis alba] |
| Match: gi|33862185|ref|NP_893746.1| |
score: 95.13 |
e-value: 1.5e-18 |
Identity: 30.94% |
Span: 537bp (56.9%) |
Frame: 1 |
| gi|33862185|ref|NP_893746.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|15223259|ref|NP_172330.1| |
score: 94.74 |
e-value: 2e-18 |
Identity: 31.25% |
Span: 513bp (54.4%) |
Frame: 1 |
| SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|26452898|dbj|BAC43527.1| |
score: 94.74 |
e-value: 2e-18 |
Identity: 31.25% |
Span: 513bp (54.4%) |
Frame: 1 |
| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana] |
| Match: gi|33864638|ref|NP_896197.1| |
score: 94.74 |
e-value: 2e-18 |
Identity: 28.5% |
Span: 597bp (63.3%) |
Frame: 1 |
| gi|33864638|ref|NP_896197.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Synechococcus sp. WH 8... |
| Match: gi|2353173|gb|AAB69385.1| |
score: 94.74 |
e-value: 2e-18 |
Identity: 31.25% |
Span: 513bp (54.4%) |
Frame: 1 |
| sigma factor 2 [Arabidopsis thaliana] |
| Match: gi|7434772|pir||T14359 |
score: 94.36 |
e-value: 2.6e-18 |
Identity: 30.93% |
Span: 501bp (53.1%) |
Frame: 1 |
| gi|7434772|pir||T14359 transcription initiation factor sigma C - red alga (Cyanidium caldarium) gi|3077740|dbj|BAA25... |
| Match: gi|34902100|ref|NP_912396.1| |
score: 93.97 |
e-value: 3.4e-18 |
Identity: 27.96% |
Span: 555bp (58.9%) |
Frame: 1 |
| gi|34902100|ref|NP_912396.1| unknown protein [Oryza sativa (japonica cultivar-group)] gi|29893614|gb|AAP06868.1| unkn... |
| Match: gi|19910022|dbj|BAB87262.1| |
score: 93.59 |
e-value: 4.4e-18 |
Identity: 32.57% |
Span: 519bp (55.0%) |
Frame: 1 |
| gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta] |
| Match: gi|33861053|ref|NP_892614.1| |
score: 93.2 |
e-value: 5.8e-18 |
Identity: 32.45% |
Span: 552bp (58.5%) |
Frame: 1 |
| gi|33861053|ref|NP_892614.1| Putative principal RNA polymerase sigma factor [Prochlorococcus marinus subsp. pastoris ... |
| Match: gi|33241240|ref|NP_876182.1| |
score: 93.2 |
e-value: 5.8e-18 |
Identity: 27.69% |
Span: 579bp (61.4%) |
Frame: 1 |
| gi|33241240|ref|NP_876182.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) [Prochlorococcus marinus sub... |
| Match: gi|33866315|ref|NP_897874.1| |
score: 92.82 |
e-value: 7.5e-18 |
Identity: 31.12% |
Span: 585bp (62.0%) |
Frame: 1 |
| gi|33866315|ref|NP_897874.1| Putative principal RNA polymerase sigma factor [Synechococcus sp. WH 8102] gi|33639290|e... |
| Match: gi|37523928|ref|NP_927305.1| |
score: 92.43 |
e-value: 9.8e-18 |
Identity: 32.11% |
Span: 645bp (68.4%) |
Frame: 1 |
| gi|37523928|ref|NP_927305.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35214934|dbj|BAC92300.1| g... |
| Match: gi|16330303|ref|NP_441031.1| |
score: 92.05 |
e-value: 1.3e-17 |
Identity: 27.98% |
Span: 648bp (68.7%) |
Frame: 1 |
| gi|16330303|ref|NP_441031.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434778|pir||S77153 transcri... |
| Match: gi|23043774|ref|ZP_00075011.1| |
score: 92.05 |
e-value: 1.3e-17 |
Identity: 30% |
Span: 627bp (66.5%) |
Frame: 1 |
| gi|23043774|ref|ZP_00075011.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Trichodesmium e... |
| Match: gi|1769596|gb|AAB39997.1| |
score: 92.05 |
e-value: 1.3e-17 |
Identity: 29% |
Span: 597bp (63.3%) |
Frame: 1 |
| gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp.] |
| Match: gi|419699|pir||JN0445 |
score: 91.66 |
e-value: 1.7e-17 |
Identity: 30.77% |
Span: 693bp (73.5%) |
Frame: 1 |
| gi|419699|pir||JN0445 transcription initiation factor sigma homolog hrdE - Streptomyces aureofaciens gi|153309|gb|AAA... |
| Match: gi|33863540|ref|NP_895100.1| |
score: 91.28 |
e-value: 2.2e-17 |
Identity: 30.61% |
Span: 585bp (62.0%) |
Frame: 1 |
| gi|33863540|ref|NP_895100.1| Putative principal RNA polymerase sigma factor [Prochlorococcus marinus str. MIT 9313] g... |
| Match: gi|23127245|ref|ZP_00109119.1| |
score: 90.89 |
e-value: 2.9e-17 |
Identity: 28.97% |
Span: 639bp (67.8%) |
Frame: 1 |
| gi|23127245|ref|ZP_00109119.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|15605346|ref|NP_220132.1| |
score: 90.51 |
e-value: 3.7e-17 |
Identity: 31.74% |
Span: 495bp (52.5%) |
Frame: 1 |
| gi|15605346|ref|NP_220132.1| RNA Polymerase Sigma-66 [Chlamydia trachomatis] gi|1710679|sp|P18333|RPSD_CHLTR RNA poly... |
| Match: gi|418631|pir||RNCW7H |
score: 90.51 |
e-value: 3.7e-17 |
Identity: 31.74% |
Span: 495bp (52.5%) |
Frame: 1 |
| gi|418631|pir||RNCW7H transcription initiation factor sigma 70 - Chlamydia trachomatis gi|144616|gb|AAA23168.1| sigma... |
| Match: gi|15835519|ref|NP_297278.1| |
score: 90.51 |
e-value: 3.7e-17 |
Identity: 31.74% |
Span: 495bp (52.5%) |
Frame: 1 |
| gi|15835519|ref|NP_297278.1| RNA polymerase sigma factor RpoD [Chlamydia muridarum] gi|7388084|sp|P56835|RPSD_CHLMU R... |
| Match: gi|1808669|emb|CAA71796.1| |
score: 89.74 |
e-value: 6.4e-17 |
Identity: 29.79% |
Span: 561bp (59.5%) |
Frame: 1 |
| gi|1808669|emb|CAA71796.1| RNA polymerase [Renibacterium salmoninarum] |
| Match: gi|2564653|gb|AAC45358.1| |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 27.73% |
Span: 657bp (69.7%) |
Frame: 1 |
| gi|2564653|gb|AAC45358.1| group 2 alternative sigma factor [Nostoc punctiforme] |
| Match: gi|29840756|ref|NP_829862.1| |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 31.14% |
Span: 495bp (52.5%) |
Frame: 1 |
| gi|29840756|ref|NP_829862.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila caviae GPIC] gi|29835106|gb|... |
| Match: gi|15618665|ref|NP_224951.1| |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 31.14% |
Span: 495bp (52.5%) |
Frame: 1 |
| gi|15618665|ref|NP_224951.1| RNA Polymerase Sigma-66 [Chlamydophila pneumoniae CWL029] gi|15836289|ref|NP_300813.1| R... |
| Match: gi|629227|pir||S41307 |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 28.39% |
Span: 693bp (73.5%) |
Frame: 1 |
| gi|629227|pir||S41307 transcription initiation factor sigma - Streptomyces griseus gi|581664|emb|CAA53564.1| sigma fa... |
| Match: gi|2117918|pir||I40872 |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 31.14% |
Span: 495bp (52.5%) |
Frame: 1 |
| gi|2117918|pir||I40872 transcription initiation factor sigma 70 - Chlamydophila psittaci gi|520418|gb|AAA50747.1| maj... |
| Match: gi|6463980|dbj|BAA86957.1| |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 28.05% |
Span: 657bp (69.7%) |
Frame: 1 |
| gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942] |
| Match: gi|1582791|prf||2119302A |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 32.39% |
Span: 501bp (53.1%) |
Frame: 1 |
| gi|1582791|prf||2119302A sigma factor |
| Match: gi|11132962|sp|P77951|HRDB_STRGR |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 32.39% |
Span: 501bp (53.1%) |
Frame: 1 |
| gi|11132962|sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB gi|1617256|gb|AAB16905.1| principal sigma... |
| Match: gi|29828986|ref|NP_823620.1| |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 32.39% |
Span: 501bp (53.1%) |
Frame: 1 |
| gi|29828986|ref|NP_823620.1| putative RNA polymerase major sigma factor, sigma-70 family [Streptomyces avermitilis MA... |
| Match: gi|16752284|ref|NP_445653.1| |
score: 89.35 |
e-value: 8.3e-17 |
Identity: 31.14% |
Span: 495bp (52.5%) |
Frame: 1 |
| gi|16752284|ref|NP_445653.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila pneumoniae AR39] gi|11261352... |
| Match: gi|16330349|ref|NP_441077.1| |
score: 88.97 |
e-value: 1.1e-16 |
Identity: 26.44% |
Span: 768bp (81.4%) |
Frame: 1 |
| gi|16330349|ref|NP_441077.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434781|pir||S77199 transcri... |
| Match: gi|16332132|ref|NP_442860.1| |
score: 88.97 |
e-value: 1.1e-16 |
Identity: 29.25% |
Span: 633bp (67.1%) |
Frame: 1 |
| gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434770|pir||S76760 transcri... |
| Match: gi|98896|pir||S11712 |
score: 88.97 |
e-value: 1.1e-16 |
Identity: 33.77% |
Span: 447bp (47.4%) |
Frame: 1 |
| gi|98896|pir||S11712 transcription initiation factor sigma hrdB - Streptomyces coelicolor gi|48745|emb|CAA37175.1| un... |
| Match: gi|21224164|ref|NP_629943.1| |
score: 88.97 |
e-value: 1.1e-16 |
Identity: 33.77% |
Span: 447bp (47.4%) |
Frame: 1 |
| gi|21224164|ref|NP_629943.1| major vegetative sigma factor [Streptomyces coelicolor A3(2)] gi|12644145|sp|P18183|HRDB... |
| Match: gi|419697|pir||JN0443 |
score: 88.97 |
e-value: 1.1e-16 |
Identity: 33.77% |
Span: 447bp (47.4%) |
Frame: 1 |
| gi|419697|pir||JN0443 transcription initiation factor sigma homolog hrdB - Streptomyces aureofaciens gi|153306|gb|AAA... |
| Match: gi|418633|pir||RNAGVS |
score: 88.58 |
e-value: 1.4e-16 |
Identity: 28.93% |
Span: 720bp (76.4%) |
Frame: 1 |
| gi|418633|pir||RNAGVS transcription initiation factor sigma, vegetative - Agrobacterium tumefaciens gi|39132|emb|CAA4... |
| Match: gi|15889446|ref|NP_355127.1| |
score: 88.58 |
e-value: 1.4e-16 |
Identity: 28.93% |
Span: 720bp (76.4%) |
Frame: 1 |
| gi|15889446|ref|NP_355127.1| AGR_C_3929p [Agrobacterium tumefaciens] gi|17936050|ref|NP_532840.1| RNA polymerase sigm... |
| Match: gi|28211633|ref|NP_782577.1| |
score: 88.58 |
e-value: 1.4e-16 |
Identity: 34.38% |
Span: 474bp (50.3%) |
Frame: 1 |
| gi|28211633|ref|NP_782577.1| RNA polymerase sigma factor rpoD [Clostridium tetani E88] gi|28204075|gb|AAO36514.1| RNA... |
| Match: gi|33239946|ref|NP_874888.1| |
score: 88.2 |
e-value: 1.9e-16 |
Identity: 30.85% |
Span: 552bp (58.5%) |
Frame: 1 |
| gi|33239946|ref|NP_874888.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) [Prochlorococcus marinus sub... |
| Match: gi|28493466|ref|NP_787627.1| |
score: 87.81 |
e-value: 2.4e-16 |
Identity: 30.87% |
Span: 684bp (72.5%) |
Frame: 1 |
| gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist] gi|28476507|gb|AAO44596.1| ... |
| Match: gi|28572422|ref|NP_789202.1| |
score: 87.81 |
e-value: 2.4e-16 |
Identity: 30.87% |
Span: 684bp (72.5%) |
Frame: 1 |
| gi|28572422|ref|NP_789202.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei TW08/27] gi|28410553|emb... |
| Match: gi|37522141|ref|NP_925518.1| |
score: 87.81 |
e-value: 2.4e-16 |
Identity: 30.46% |
Span: 588bp (62.4%) |
Frame: 1 |
| gi|37522141|ref|NP_925518.1| principal RNA polymerase sigma factor [Gloeobacter violaceus] gi|35213141|dbj|BAC90513.1... |
| Match: gi|23017717|ref|ZP_00057441.1| |
score: 87.43 |
e-value: 3.2e-16 |
Identity: 32.69% |
Span: 465bp (49.3%) |
Frame: 1 |
| gi|23017717|ref|ZP_00057441.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Thermobifida fu... |
| Match: gi|33241312|ref|NP_876254.1| |
score: 87.04 |
e-value: 4.1e-16 |
Identity: 26.35% |
Span: 795bp (84.3%) |
Frame: 1 |
| gi|33241312|ref|NP_876254.1| DNA-directed RNA polymerase sigma subunit [Prochlorococcus marinus subsp. marinus str. C... |
| Match: gi|15900942|ref|NP_345546.1| |
score: 86.66 |
e-value: 5.4e-16 |
Identity: 32.5% |
Span: 474bp (50.3%) |
Frame: 1 |
| gi|15900942|ref|NP_345546.1| RNA polymerase sigma-70 factor [Streptococcus pneumoniae TIGR4] gi|15903023|ref|NP_35857... |
| Match: gi|33864481|ref|NP_896041.1| |
score: 86.66 |
e-value: 5.4e-16 |
Identity: 35.67% |
Span: 465bp (49.3%) |
Frame: 1 |
| gi|33864481|ref|NP_896041.1| Putative type II alternative RNA polymerase sigma factor [Prochlorococcus marinus str. M... |
| Match: gi|20808174|ref|NP_623345.1| |
score: 86.66 |
e-value: 5.4e-16 |
Identity: 31.88% |
Span: 474bp (50.3%) |
Frame: 1 |
| gi|20808174|ref|NP_623345.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) [Thermoanaerobacter tengcon... |
| Match: gi|15595116|ref|NP_212905.1| |
score: 86.66 |
e-value: 5.4e-16 |
Identity: 33.12% |
Span: 456bp (48.4%) |
Frame: 1 |
| gi|15595116|ref|NP_212905.1| RNA polymerase sigma factor (rpoS) [Borrelia burgdorferi] gi|7451285|pir||B70196 RNA pol... |
| Match: gi|6682871|dbj|BAA88922.1| |
score: 86.66 |
e-value: 5.4e-16 |
Identity: 30.57% |
Span: 567bp (60.1%) |
Frame: 1 |
| sigma factor [Nicotiana tabacum] |
|
| 150 lower scoring hits censored -- only 100 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 6 hits recorded |
| Match: At5g24120.1 |
score: 399.1 |
e-value: 2e-111 |
Identity: 65.76% |
Span: 882bp (93.5%) |
Frame: 1 |
| At5g24120.1 68412.m02593 sigma-related factor (emb CAA77213.1) |
| Match: At2g36990.1 |
score: 97.44 |
e-value: 1e-20 |
Identity: 28.9% |
Span: 651bp (69.0%) |
Frame: 1 |
| At2g36990.1 68409.m04106 RNA polymerase sigma-70 factor -related |
| Match: At1g08540.1 |
score: 94.74 |
e-value: 6.6e-20 |
Identity: 31.25% |
Span: 513bp (54.4%) |
Frame: 1 |
| At1g08540.1 68408.m00853 plastid RNA polymerase sigma-subunit -related similar to GB:BAA22427 and EST gb N65838 |
| Match: At1g64860.1 |
score: 83.57 |
e-value: 1.5e-16 |
Identity: 31.09% |
Span: 567bp (60.1%) |
Frame: 1 |
| At1g64860.1 68408.m06739 plastid RNA polymerase sigma-subunit identical to plastid RNA polymerase sigma-subunit GI:23... |
| Match: At5g13730.1 |
score: 65.47 |
e-value: 4.3e-11 |
Identity: 26.96% |
Span: 588bp (62.4%) |
Frame: 1 |
| At5g13730.1 68412.m01474 sigma-related factor (gb|AAC97954.1) |
| Match: At3g53920.1 |
score: 57.38 |
e-value: 1.2e-08 |
Identity: 25.57% |
Span: 522bp (55.4%) |
Frame: 1 |
| At3g53920.1 68410.m05512 sigma factor SigC |
|
