| genbank/nr [blastx] | Showing best 38 hits recorded |
| Match: gi|18855035|gb|AAL79727.1| |
score: 57 |
e-value: 3.4e-07 |
Identity: 92.59% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|18855035|gb|AAL79727.1| putative ribosomal large subunit pseudouridine synthase [Oryza sativa] |
| Match: gi|6721111|gb|AAF26765.1| |
score: 54.68 |
e-value: 1.7e-06 |
Identity: 92.59% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|6721111|gb|AAF26765.1| T4O12.25 [Arabidopsis thaliana] |
| Match: gi|42572121|ref|NP_974151.1| |
score: 54.68 |
e-value: 1.7e-06 |
Identity: 92.59% |
Span: 81bp (11.5%) |
Frame: -3 |
| pseudouridine synthase family protein [Arabidopsis thaliana] >gi122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA ps... |
| Match: gi|42563248|ref|NP_177732.2| |
score: 54.68 |
e-value: 1.7e-06 |
Identity: 92.59% |
Span: 81bp (11.5%) |
Frame: -3 |
| pseudouridine synthase family protein [Arabidopsis thaliana] |
| Match: gi|1723614|sp|P50513|RLUD_ZYMMO |
score: 48.52 |
e-value: 0.00012 |
Identity: 80.77% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|1723614|sp|P50513|RLUD_ZYMMO Ribosomal large subunit pseudouridine synthase D (Pseudouridylate synthase) (Uracil h... |
| Match: gi|6721111|gb|AAF26765.1| |
score: 48.14 |
e-value: 0.00016 |
Identity: 90.91% |
Span: 66bp (9.4%) |
Frame: -2 |
| gi|6721111|gb|AAF26765.1| T4O12.25 [Arabidopsis thaliana] |
| Match: gi|42572121|ref|NP_974151.1| |
score: 48.14 |
e-value: 0.00016 |
Identity: 90.91% |
Span: 66bp (9.4%) |
Frame: -2 |
| pseudouridine synthase family protein [Arabidopsis thaliana] >gi122215273|sp|Q3ECD0.1|PUS2_ARATH RecName: Full=RNA ps... |
| Match: gi|42563248|ref|NP_177732.2| |
score: 48.14 |
e-value: 0.00016 |
Identity: 90.91% |
Span: 66bp (9.4%) |
Frame: -2 |
| pseudouridine synthase family protein [Arabidopsis thaliana] |
| Match: gi|26450633|dbj|BAC42428.1| |
score: 48.14 |
e-value: 0.00016 |
Identity: 90.91% |
Span: 66bp (9.4%) |
Frame: -2 |
| putative RNA pseudouridylate synthase [Arabidopsis thaliana] |
| Match: gi|22996942|ref|ZP_00041183.1| |
score: 47.37 |
e-value: 0.00027 |
Identity: 74.07% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|22996942|ref|ZP_00041183.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Xylella fastidiosa Ann-1] |
| Match: gi|28199626|ref|NP_779940.1| |
score: 47.37 |
e-value: 0.00027 |
Identity: 74.07% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|28199626|ref|NP_779940.1| ribosomal large subunit pseudouridine synthase D [Xylella fastidiosa Temecula1] gi|34395... |
| Match: gi|15837541|ref|NP_298229.1| |
score: 46.59 |
e-value: 0.00046 |
Identity: 74.07% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|15837541|ref|NP_298229.1| ribosomal large subunit pseudouridine synthase D [Xylella fastidiosa 9a5c] gi|34395837|s... |
| Match: gi|22994881|ref|ZP_00039369.1| |
score: 46.21 |
e-value: 0.0006 |
Identity: 70.37% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|22994881|ref|ZP_00039369.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Xylella fastidiosa Dixon] |
| Match: gi|15806790|ref|NP_295512.1| |
score: 45.82 |
e-value: 0.00079 |
Identity: 59.26% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|15806790|ref|NP_295512.1| ribosomal large subunit pseudouridine synthase D [Deinococcus radiodurans] gi|7473801|pi... |
| Match: gi|28378455|ref|NP_785347.1| |
score: 45.44 |
e-value: 0.001 |
Identity: 80.77% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|28378455|ref|NP_785347.1| pseudouridylate synthase [Lactobacillus plantarum WCFS1] gi|28271291|emb|CAD64195.1| pse... |
| Match: gi|24113932|ref|NP_708442.1| |
score: 45.05 |
e-value: 0.001 |
Identity: 69.23% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|24113932|ref|NP_708442.1| suppressor of ftsH mutation [Shigella flexneri 2a str. 301] gi|26248957|ref|NP_754997.1|... |
| Match: gi|46445989|ref|YP_007354.1| |
score: 45.05 |
e-value: 0.001 |
Identity: 76% |
Span: 75bp (10.6%) |
Frame: -3 |
| gi|46445989|ref|YP_007354.1| probable 23S RNA-specific pseudouridine synthase D [Parachlamydia sp. UWE25] >gi|4639963... |
| Match: gi|15803118|ref|NP_289149.1| |
score: 45.05 |
e-value: 0.001 |
Identity: 69.23% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|15803118|ref|NP_289149.1| suppressor of ftsH mutation [Escherichia coli O157:H7 EDL933] gi|25322380|pir||G85905 su... |
| Match: gi|15832711|ref|NP_311484.1| |
score: 45.05 |
e-value: 0.001 |
Identity: 69.23% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|15832711|ref|NP_311484.1| suppressor of ftsH mutation [Escherichia coli O157:H7] gi|34395799|sp|Q8X9F0|RLUD_ECO57 ... |
| Match: gi|38492837|pdb|1PRZ|A |
score: 45.05 |
e-value: 0.001 |
Identity: 69.23% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|38492837|pdb|1PRZ|A Chain A, Crystal Structure Of Pseudouridine Synthase Rlud Catalytic Module |
| Match: gi|46156638|ref|ZP_00132277.2| |
score: 45.05 |
e-value: 0.001 |
Identity: 69.23% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|46156638|ref|ZP_00132277.2| COG0564: Pseudouridylate synthases, 23S RNA-specific [Haemophilus somnus 2336] |
| Match: gi|23466534|ref|ZP_00122122.1| |
score: 45.05 |
e-value: 0.001 |
Identity: 69.23% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|23466534|ref|ZP_00122122.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Haemophilus somnus 129PT] |
| Match: gi|40889481|pdb|1QYU|A |
score: 44.67 |
e-value: 0.002 |
Identity: 65.38% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|40889481|pdb|1QYU|A Chain A, Structure Of The Catalytic Domain Of 23s Rrna Pseudouridine Synthase Rlud |
| Match: gi|16130515|ref|NP_417085.1| |
score: 44.67 |
e-value: 0.002 |
Identity: 65.38% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|16130515|ref|NP_417085.1| SfhB [Escherichia coli K12] gi|2507541|sp|P33643|RLUD_ECOLI Ribosomal large subunit pseu... |
| Match: gi|1799998|dbj|BAA16479.1| |
score: 44.67 |
e-value: 0.002 |
Identity: 65.38% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|1799998|dbj|BAA16479.1| similar to [SwissProt Accession Number P33643]~start codon is not identified yet [Escheric... |
| Match: gi|18855035|gb|AAL79727.1| |
score: 44.28 |
e-value: 0.002 |
Identity: 85.71% |
Span: 63bp (8.9%) |
Frame: -2 |
| gi|18855035|gb|AAL79727.1| putative ribosomal large subunit pseudouridine synthase [Oryza sativa] |
| Match: gi|46914570|emb|CAG21349.1| |
score: 43.9 |
e-value: 0.003 |
Identity: 75% |
Span: 72bp (10.2%) |
Frame: -3 |
| gi|46914570|emb|CAG21349.1| putative ribosomal large subunit pseudouridine synthase D [Photobacterium profundum] |
| Match: gi|33864373|ref|NP_895933.1| |
score: 43.9 |
e-value: 0.003 |
Identity: 80.95% |
Span: 63bp (8.9%) |
Frame: -2 |
| gi|33864373|ref|NP_895933.1| putative pseudouridylate synthase specific to ribosomal large subunit [Prochlorococcus m... |
| Match: gi|21232518|ref|NP_638435.1| |
score: 43.9 |
e-value: 0.003 |
Identity: 62.96% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|21232518|ref|NP_638435.1| ribosomal large subunit pseudouridine synthase D [Xanthomonas campestris pv. campestris ... |
| Match: gi|23098941|ref|NP_692407.1| |
score: 43.13 |
e-value: 0.005 |
Identity: 69.23% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|23098941|ref|NP_692407.1| hypothetical protein [Oceanobacillus iheyensis HTE831] gi|22777169|dbj|BAC13442.1| hypot... |
| Match: gi|18310832|ref|NP_562766.1| |
score: 43.13 |
e-value: 0.005 |
Identity: 80.95% |
Span: 63bp (8.9%) |
Frame: -2 |
| gi|18310832|ref|NP_562766.1| conserved hypothetical protein [Clostridium perfringens] gi|18145514|dbj|BAB81556.1| con... |
| Match: gi|18310832|ref|NP_562766.1| |
score: 42.74 |
e-value: 0.007 |
Identity: 76.92% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|18310832|ref|NP_562766.1| conserved hypothetical protein [Clostridium perfringens] gi|18145514|dbj|BAB81556.1| con... |
| Match: gi|49235365|ref|ZP_00329435.1| |
score: 42.74 |
e-value: 0.007 |
Identity: 70.37% |
Span: 81bp (11.5%) |
Frame: -3 |
| gi|49235365|ref|ZP_00329435.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Moorella thermoacetica ATCC 39073] |
| Match: gi|21401877|ref|NP_657862.1| |
score: 42.36 |
e-value: 0.009 |
Identity: 68.18% |
Span: 66bp (9.4%) |
Frame: -2 |
| gi|21401877|ref|NP_657862.1| PseudoU_synth_2, RNA pseudouridylate synthase [Bacillus anthracis A2012] |
| Match: gi|47570307|ref|ZP_00240954.1| |
score: 42.36 |
e-value: 0.009 |
Identity: 68.18% |
Span: 66bp (9.4%) |
Frame: -2 |
| gi|47570307|ref|ZP_00240954.1| ribosomal large subunit pseudouridine synthase D [Bacillus cereus G9241] >gi|47553016|... |
| Match: gi|42782985|ref|NP_980232.1| |
score: 42.36 |
e-value: 0.009 |
Identity: 68.18% |
Span: 66bp (9.4%) |
Frame: -2 |
| gi|42782985|ref|NP_980232.1| ribosomal large subunit pseudouridine synthase, RluD subfamily [Bacillus cereus ATCC 109... |
| Match: gi|30021981|ref|NP_833612.1| |
score: 42.36 |
e-value: 0.009 |
Identity: 68.18% |
Span: 66bp (9.4%) |
Frame: -2 |
| gi|30021981|ref|NP_833612.1| Ribosomal large subunit pseudouridine synthase D [Bacillus cereus ATCC 14579] gi|2989753... |
| Match: gi|41689585|ref|ZP_00146118.1| |
score: 42.36 |
e-value: 0.009 |
Identity: 65.38% |
Span: 78bp (11.1%) |
Frame: -3 |
| gi|41689585|ref|ZP_00146118.1| COG0564: Pseudouridylate synthases, 23S RNA-specific [Psychrobacter sp. 273-4] |
|
| arabidopsis/peptide [blastx] | Showing best 4 hits recorded |
| Match: At1g76050.1 |
score: 54.68 |
e-value: 4.9e-08 |
Identity: 92.59% |
Span: 81bp (11.5%) |
Frame: -3 |
| At1g76050.1 68408.m08109 RNA pseudouridylate synthase -related contains Pfam profile: PF00849 RNA pseudouridylate sy... |
| Match: At1g76050.2 |
score: 54.68 |
e-value: 4.9e-08 |
Identity: 92.59% |
Span: 81bp (11.5%) |
Frame: -3 |
| At1g76050.2 68414.m08832 pseudouridine synthase family protein contains Pfam profiles: PF00849 RNA pseudouridylate sy... |
| Match: At1g76050.1 |
score: 48.14 |
e-value: 4.6e-06 |
Identity: 90.91% |
Span: 66bp (9.4%) |
Frame: -2 |
| At1g76050.1 68408.m08109 RNA pseudouridylate synthase -related contains Pfam profile: PF00849 RNA pseudouridylate sy... |
| Match: At1g76050.2 |
score: 48.14 |
e-value: 4.6e-06 |
Identity: 90.91% |
Span: 66bp (9.4%) |
Frame: -2 |
| At1g76050.2 68414.m08832 pseudouridine synthase family protein contains Pfam profiles: PF00849 RNA pseudouridylate sy... |
|
