| genbank/nr [blastx] | Showing best 85 hits recorded |
| Match: gi|48716974|dbj|BAD23667.1| |
score: 161.4 |
e-value: 1.2e-38 |
Identity: 89.77% |
Span: 264bp (38.9%) |
Frame: 2 |
| putative Sm protein F [Oryza sativa Japonica Group] >gi215765012|dbj|BAG86709.1| unnamed protein product [Oryza sativ... |
| Match: gi|15224366|ref|NP_181909.1| |
score: 161.4 |
e-value: 1.2e-38 |
Identity: 87.91% |
Span: 270bp (39.8%) |
Frame: 2 |
| small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative ... |
| Match: gi|21554327|gb|AAM63434.1| |
score: 157.9 |
e-value: 1.3e-37 |
Identity: 86.81% |
Span: 270bp (39.8%) |
Frame: 2 |
| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] |
| Match: gi|15232179|ref|NP_191540.1| |
score: 155.2 |
e-value: 8.6e-37 |
Identity: 86.81% |
Span: 270bp (39.8%) |
Frame: 2 |
| small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative ... |
| Match: gi|5901998|ref|NP_009011.1| |
score: 139.8 |
e-value: 3.7e-32 |
Identity: 88% |
Span: 225bp (33.2%) |
Frame: 2 |
| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens] >gi113865835|ref|NP_084421.1| U6 snRNA-associated Sm-like pro... |
| Match: gi|48735113|gb|AAH72549.1| |
score: 138.7 |
e-value: 8.3e-32 |
Identity: 86.67% |
Span: 225bp (33.2%) |
Frame: 2 |
| gi|48735113|gb|AAH72549.1| Unknown (protein for MGC:92379) [Danio rerio] |
| Match: gi|47217355|emb|CAG11060.1| |
score: 138.3 |
e-value: 1.1e-31 |
Identity: 89.04% |
Span: 219bp (32.3%) |
Frame: 2 |
| gi|47217355|emb|CAG11060.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|17510579|ref|NP_490883.1| |
score: 131 |
e-value: 1.7e-29 |
Identity: 81.58% |
Span: 228bp (33.6%) |
Frame: 2 |
| gi|17510579|ref|NP_490883.1| u6 snRNA-associated Sm-like protein (lsm-5) [Caenorhabditis elegans] gi|14916400|gb|AAK7... |
| Match: gi|20861373|ref|XP_134104.1| |
score: 131 |
e-value: 1.7e-29 |
Identity: 86.3% |
Span: 219bp (32.3%) |
Frame: 2 |
| gi|20861373|ref|XP_134104.1| RIKEN cDNA 2410088K19 [Mus musculus] |
| Match: gi|39589389|emb|CAE74418.1| |
score: 130.2 |
e-value: 3e-29 |
Identity: 83.56% |
Span: 219bp (32.3%) |
Frame: 2 |
| gi|39589389|emb|CAE74418.1| Hypothetical protein CBG22150 [Caenorhabditis briggsae] |
| Match: gi|31212689|ref|XP_315329.1| |
score: 129.4 |
e-value: 5e-29 |
Identity: 85.71% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|31212689|ref|XP_315329.1| ENSANGP00000021121 [Anopheles gambiae] gi|21299149|gb|EAA11294.1| ENSANGP00000021121 [An... |
| Match: gi|24656550|ref|NP_611528.1| |
score: 126.3 |
e-value: 4.3e-28 |
Identity: 82.86% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|24656550|ref|NP_611528.1| CG9344-PA [Drosophila melanogaster] gi|7291213|gb|AAF46645.1| CG9344-PA [Drosophila mela... |
| Match: gi|34851678|ref|XP_344755.1| |
score: 125.2 |
e-value: 9.5e-28 |
Identity: 89.39% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|34851678|ref|XP_344755.1| similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) [Rattus norvegicus] |
| Match: gi|34879731|ref|XP_344138.1| |
score: 125.2 |
e-value: 9.5e-28 |
Identity: 89.39% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|34879731|ref|XP_344138.1| similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) [Rattus norvegicus] |
| Match: gi|11602707|emb|CAC18540.1| |
score: 124 |
e-value: 2.1e-27 |
Identity: 77.63% |
Span: 228bp (33.6%) |
Frame: 2 |
| gi|11602707|emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococcus multilocularis] |
| Match: gi|46229796|gb|EAK90614.1| |
score: 105.9 |
e-value: 6e-22 |
Identity: 60.49% |
Span: 243bp (35.8%) |
Frame: 2 |
| gi|46229796|gb|EAK90614.1| small nuclear ribonucleo protein [Cryptosporidium parvum] |
| Match: gi|19115292|ref|NP_594380.1| |
score: 104.4 |
e-value: 1.7e-21 |
Identity: 66.18% |
Span: 204bp (30.1%) |
Frame: 2 |
| gi|19115292|ref|NP_594380.1| small nuclear ribonucleoprotein, F-like [Schizosaccharomyces pombe] gi|10720076|sp|Q9UUI... |
| Match: gi|23619200|ref|NP_705162.1| |
score: 103.6 |
e-value: 3e-21 |
Identity: 64.29% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|23619200|ref|NP_705162.1| u6 snRNA-associated sm-like protein, putative [Plasmodium falciparum 3D7] gi|23615407|em... |
| Match: gi|49068436|ref|XP_398507.1| |
score: 96.67 |
e-value: 3.6e-19 |
Identity: 59.21% |
Span: 228bp (33.6%) |
Frame: 2 |
| gi|49068436|ref|XP_398507.1| hypothetical protein UM00892.1 [Ustilago maydis 521] >gi|46096843|gb|EAK82076.1| hypothe... |
| Match: gi|28829666|gb|AAO52182.1| |
score: 95.13 |
e-value: 1.1e-18 |
Identity: 72.58% |
Span: 186bp (27.4%) |
Frame: 2 |
| gi|28829666|gb|AAO52182.1| similar to Homo sapiens (Human). Sm protein F [Dictyostelium discoideum] |
| Match: gi|23483747|gb|EAA19315.1| |
score: 95.13 |
e-value: 1.1e-18 |
Identity: 60% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|23483747|gb|EAA19315.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium yoelii yoelii] |
| Match: gi|46107150|ref|XP_380634.1| |
score: 94.36 |
e-value: 1.8e-18 |
Identity: 55.17% |
Span: 261bp (38.5%) |
Frame: 2 |
| gi|46107150|ref|XP_380634.1| hypothetical protein FG00458.1 [Gibberella zeae PH-1] >gi|42545628|gb|EAA68471.1| hypoth... |
| Match: gi|38108971|gb|EAA54910.1| |
score: 82.8 |
e-value: 5.4e-15 |
Identity: 58.11% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|38108971|gb|EAA54910.1| hypothetical protein MG05701.4 [Magnaporthe grisea 70-15] |
| Match: gi|33876795|gb|AAH02505.2| |
score: 74.71 |
e-value: 1.5e-12 |
Identity: 50% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|33876795|gb|AAH02505.2| SNRPF protein [Homo sapiens] |
| Match: gi|39645845|gb|AAH63397.1| |
score: 74.71 |
e-value: 1.5e-12 |
Identity: 50% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|39645845|gb|AAH63397.1| Unknown (protein for IMAGE:5176590) [Homo sapiens] |
| Match: gi|4507131|ref|NP_003086.1| |
score: 74.71 |
e-value: 1.5e-12 |
Identity: 50% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|4507131|ref|NP_003086.1| small nuclear ribonucleoprotein polypeptide F [Homo sapiens] gi|6094209|sp|Q15356|RUXF_HU... |
| Match: gi|48145619|emb|CAG33032.1| |
score: 74.71 |
e-value: 1.5e-12 |
Identity: 50% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|48145619|emb|CAG33032.1| SNRPF [Homo sapiens] |
| Match: gi|41946811|gb|AAH66015.1| |
score: 74.71 |
e-value: 1.5e-12 |
Identity: 50% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|41946811|gb|AAH66015.1| Unknown (protein for IMAGE:5715059) [Mus musculus] |
| Match: gi|34864945|ref|XP_345815.1| |
score: 74.71 |
e-value: 1.5e-12 |
Identity: 50% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|34864945|ref|XP_345815.1| similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Ratt... |
| Match: gi|38079111|ref|XP_357414.1| |
score: 74.71 |
e-value: 1.5e-12 |
Identity: 50% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|38079111|ref|XP_357414.1| similar to SNRPF protein [Mus musculus] |
| Match: gi|15234669|ref|NP_194751.1| |
score: 73.94 |
e-value: 2.5e-12 |
Identity: 48.48% |
Span: 198bp (29.2%) |
Frame: 2 |
| RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) [Arabidopsis thaliana] >gi10720264|sp|Q9SUM2.1|RUXF_ARATH RecName: Full=Prob... |
| Match: gi|47218337|emb|CAG04169.1| |
score: 73.17 |
e-value: 4.3e-12 |
Identity: 50% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|47218337|emb|CAG04169.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|31212897|ref|XP_312266.1| |
score: 72.02 |
e-value: 9.6e-12 |
Identity: 48.48% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|31212897|ref|XP_312266.1| ENSANGP00000002801 [Anopheles gambiae] gi|30177439|gb|EAA07677.2| ENSANGP00000002801 [An... |
| Match: gi|22024001|ref|NP_523708.2| |
score: 69.71 |
e-value: 4.7e-11 |
Identity: 46.97% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|22024001|ref|NP_523708.2| Developmental embryonic B CG16792-PA [Drosophila melanogaster] gi|29337191|sp|Q24297|RUX... |
| Match: gi|42415804|gb|AAS15770.1| |
score: 69.71 |
e-value: 4.7e-11 |
Identity: 46.97% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|42415804|gb|AAS15770.1| DebB [Drosophila simulans] |
| Match: gi|495021|gb|AAA28445.1| |
score: 69.71 |
e-value: 4.7e-11 |
Identity: 46.97% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|495021|gb|AAA28445.1| membrane-associated protein |
| Match: gi|39589637|emb|CAE66872.1| |
score: 68.94 |
e-value: 8.1e-11 |
Identity: 42.67% |
Span: 225bp (33.2%) |
Frame: 2 |
| gi|39589637|emb|CAE66872.1| Hypothetical protein CBG12250 [Caenorhabditis briggsae] |
| Match: gi|17557029|ref|NP_498708.1| |
score: 67.4 |
e-value: 2.4e-10 |
Identity: 43.94% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|17557029|ref|NP_498708.1| small nuclear ribonucleoprotein, small nuclear ribonucleoprotein SNR-5 (9.2 kD) (snr-5) ... |
| Match: gi|27704896|ref|XP_230870.1| |
score: 66.63 |
e-value: 4e-10 |
Identity: 38.67% |
Span: 225bp (33.2%) |
Frame: 2 |
| gi|27704896|ref|XP_230870.1| similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Ratt... |
| Match: gi|23508471|ref|NP_701140.1| |
score: 63.16 |
e-value: 4.4e-09 |
Identity: 41.54% |
Span: 195bp (28.8%) |
Frame: 2 |
| gi|23508471|ref|NP_701140.1| small nuclear ribonucleoprotein F, putative [Plasmodium falciparum 3D7] gi|23496205|gb|A... |
| Match: gi|38076106|ref|XP_356732.1| |
score: 62.39 |
e-value: 7.6e-09 |
Identity: 45.45% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|38076106|ref|XP_356732.1| similar to SNRPF protein [Mus musculus] |
| Match: gi|6320586|ref|NP_010666.1| |
score: 62 |
e-value: 9.9e-09 |
Identity: 44.44% |
Span: 255bp (37.6%) |
Frame: 2 |
| gi|6320586|ref|NP_010666.1| Like Sm-F protein; Lsm6p [Saccharomyces cerevisiae] gi|12230254|sp|Q06406|LSM6_YEAST U6 s... |
| Match: gi|16082245|ref|NP_394696.1| |
score: 60.85 |
e-value: 2.2e-08 |
Identity: 38.96% |
Span: 231bp (34.1%) |
Frame: 2 |
| gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein related protein [Thermoplasma acidophilum] gi|11387090|s... |
| Match: gi|45185890|ref|NP_983606.1| |
score: 60.46 |
e-value: 2.9e-08 |
Identity: 39.74% |
Span: 222bp (32.7%) |
Frame: 2 |
| gi|45185890|ref|NP_983606.1| ACR204Cp [Eremothecium gossypii] >gi|44981680|gb|AAS51430.1| ACR204Cp [Eremothecium goss... |
| Match: gi|19112893|ref|NP_596101.1| |
score: 59.69 |
e-value: 4.9e-08 |
Identity: 40.58% |
Span: 207bp (30.5%) |
Frame: 2 |
| gi|19112893|ref|NP_596101.1| small nuclear ribonucleoprotein F [Schizosaccharomyces pombe] gi|6094210|sp|O59734|RUXF_... |
| Match: gi|38344578|emb|CAE05536.2| |
score: 57.77 |
e-value: 1.9e-07 |
Identity: 76.32% |
Span: 114bp (16.8%) |
Frame: 2 |
| gi|38344578|emb|CAE05536.2| OSJNBa0053B21.10 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|29726339|pdb|1JBM|A |
score: 57.38 |
e-value: 2.4e-07 |
Identity: 35.71% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like Archaeal Protein From Methanobacte... |
| Match: gi|29726409|pdb|1LOJ|A |
score: 57.38 |
e-value: 2.4e-07 |
Identity: 35.71% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal Protein (Smap1) Bound To Uri... |
| Match: gi|20150503|pdb|1JRI|A |
score: 57.38 |
e-value: 2.4e-07 |
Identity: 35.71% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein With Two Heptamers In The Asymme... |
| Match: gi|14324575|dbj|BAB59502.1| |
score: 57 |
e-value: 3.2e-07 |
Identity: 35.71% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium] |
| Match: gi|13541187|ref|NP_110875.1| |
score: 57 |
e-value: 3.2e-07 |
Identity: 35.71% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|13541187|ref|NP_110875.1| Small nuclear ribonucleoprotein (snRNP) homolog [Thermoplasma volcanium] gi|20178114|sp|... |
| Match: gi|48838724|ref|ZP_00295664.1| |
score: 56.22 |
e-value: 5.4e-07 |
Identity: 37.31% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|48838724|ref|ZP_00295664.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Methanosarcina barkeri str. ... |
| Match: gi|15678676|ref|NP_275791.1| |
score: 55.84 |
e-value: 7.1e-07 |
Identity: 35.82% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|15678676|ref|NP_275791.1| conserved protein [Methanothermobacter thermautotrophicus] gi|6094215|sp|O26745|RUXX_MET... |
| Match: gi|13786869|pdb|1I81|A |
score: 55.84 |
e-value: 7.1e-07 |
Identity: 35.82% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From Methanobacterium Thermoautotrophic... |
| Match: gi|41720360|ref|ZP_00149173.1| |
score: 55.45 |
e-value: 9.3e-07 |
Identity: 35.82% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|41720360|ref|ZP_00149173.1| hypothetical protein Mbur016401 [Methanococcoides burtonii DSM 6242] |
| Match: gi|27574150|pdb|1N9S|A |
score: 55.45 |
e-value: 9.3e-07 |
Identity: 43.28% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|27574150|pdb|1N9S|A Chain A, Crystal Structure Of Yeast Smf In Spacegroup P43212 gi|27574151|pdb|1N9S|B Chain B, C... |
| Match: gi|27574143|pdb|1N9R|A |
score: 54.3 |
e-value: 2.1e-06 |
Identity: 43.28% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|27574143|pdb|1N9R|A Chain A, Crystal Structure Of A Heptameric Ring Complex Of Yeast Smf In Spacegroup P4122 gi|27... |
| Match: gi|20092011|ref|NP_618086.1| |
score: 54.3 |
e-value: 2.1e-06 |
Identity: 35.82% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|20092011|ref|NP_618086.1| Sm protein [Methanosarcina acetivorans str. C2A] gi|30173335|sp|Q8TL47|RUXX_METAC Putati... |
| Match: gi|6325440|ref|NP_015508.1| |
score: 54.3 |
e-value: 2.1e-06 |
Identity: 43.28% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|6325440|ref|NP_015508.1| Sm or Sm-like snRNP protein; Smx3p [Saccharomyces cerevisiae] gi|1711405|sp|P54999|RUXF_Y... |
| Match: gi|21226441|ref|NP_632363.1| |
score: 53.91 |
e-value: 2.7e-06 |
Identity: 35.82% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|21226441|ref|NP_632363.1| putative snRNP Sm-like protein [Methanosarcina mazei Goe1] gi|30173324|sp|Q8PZZ9|RUXX_ME... |
| Match: gi|18312096|ref|NP_558763.1| |
score: 52.76 |
e-value: 6e-06 |
Identity: 33.78% |
Span: 219bp (32.3%) |
Frame: 2 |
| gi|18312096|ref|NP_558763.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum aerophilum] gi|18159526|g... |
| Match: gi|11498481|ref|NP_069709.1| |
score: 51.99 |
e-value: 1e-05 |
Identity: 37.31% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|11498481|ref|NP_069709.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304] gi|6094214|sp|O29386|RUXX_ARCFU Putati... |
| Match: gi|32415147|ref|XP_328053.1| |
score: 51.99 |
e-value: 1e-05 |
Identity: 40.3% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|32415147|ref|XP_328053.1| hypothetical protein ( related to snRNP protein SMX3 [imported] - Neurospora crassa ) gi... |
| Match: gi|46108998|ref|XP_381557.1| |
score: 50.45 |
e-value: 3e-05 |
Identity: 37.31% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|46108998|ref|XP_381557.1| hypothetical protein FG01381.1 [Gibberella zeae PH-1] >gi|42546114|gb|EAA68957.1| hypoth... |
| Match: gi|38103439|gb|EAA50136.1| |
score: 50.45 |
e-value: 3e-05 |
Identity: 34.29% |
Span: 207bp (30.5%) |
Frame: 2 |
| gi|38103439|gb|EAA50136.1| hypothetical protein MG03895.4 [Magnaporthe grisea 70-15] |
| Match: gi|45190332|ref|NP_984586.1| |
score: 50.06 |
e-value: 3.9e-05 |
Identity: 40.3% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|45190332|ref|NP_984586.1| AEL274Cp [Eremothecium gossypii] >gi|44983228|gb|AAS52410.1| AEL274Cp [Eremothecium goss... |
| Match: gi|48477742|ref|YP_023448.1| |
score: 48.91 |
e-value: 8.7e-05 |
Identity: 28.57% |
Span: 231bp (34.1%) |
Frame: 2 |
| gi|48477742|ref|YP_023448.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790] >gi|48430390|gb|AAT43255.1| snRNP ... |
| Match: gi|49110436|ref|XP_411743.1| |
score: 48.52 |
e-value: 0.00011 |
Identity: 35.48% |
Span: 183bp (27.0%) |
Frame: 2 |
| gi|49110436|ref|XP_411743.1| hypothetical protein AN7606.2 [Aspergillus nidulans FGSC A4] >gi|40742996|gb|EAA62186.1|... |
| Match: gi|28948591|pdb|1M8V|A |
score: 48.14 |
e-value: 0.00015 |
Identity: 31.58% |
Span: 228bp (33.6%) |
Frame: 2 |
| gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex With A Uridine Heptamer gi|2894... |
| Match: gi|14277786|pdb|1I8F|A |
score: 47.75 |
e-value: 0.00019 |
Identity: 41.38% |
Span: 174bp (25.7%) |
Frame: 2 |
| gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm Protein: Implications For The Eukar... |
| Match: gi|15897150|ref|NP_341755.1| |
score: 47.75 |
e-value: 0.00019 |
Identity: 36.36% |
Span: 225bp (33.2%) |
Frame: 2 |
| gi|15897150|ref|NP_341755.1| Small nuclear riboprotein protein (snRNP-1) [Sulfolobus solfataricus] gi|25394288|pir||B... |
| Match: gi|18312179|ref|NP_558846.1| |
score: 47.75 |
e-value: 0.00019 |
Identity: 41.38% |
Span: 174bp (25.7%) |
Frame: 2 |
| gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum aerophilum] gi|18159615|g... |
| Match: gi|18977914|ref|NP_579271.1| |
score: 46.98 |
e-value: 0.00033 |
Identity: 34.29% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus DSM 3638] gi|23822154|sp|... |
| Match: gi|14591301|ref|NP_143379.1| |
score: 46.98 |
e-value: 0.00033 |
Identity: 34.29% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|14591301|ref|NP_143379.1| small nucleoprotein [Pyrococcus horikoshii] gi|6094216|sp|O74016|RUXX_PYRHO Putative snR... |
| Match: gi|15920417|ref|NP_376086.1| |
score: 46.59 |
e-value: 0.00043 |
Identity: 36.36% |
Span: 225bp (33.2%) |
Frame: 2 |
| gi|15920417|ref|NP_376086.1| 90aa long hypothetical small nuclear ribonucleoprotein [Sulfolobus tokodaii] gi|15621199... |
| Match: gi|19113071|ref|NP_596279.1| |
score: 46.21 |
e-value: 0.00056 |
Identity: 30.77% |
Span: 231bp (34.1%) |
Frame: 2 |
| gi|19113071|ref|NP_596279.1| putative small ribonuclear protein-sm like [Schizosaccharomyces pombe] gi|12230213|sp|O1... |
| Match: gi|19074156|ref|NP_584762.1| |
score: 46.21 |
e-value: 0.00056 |
Identity: 34.21% |
Span: 228bp (33.6%) |
Frame: 2 |
| gi|19074156|ref|NP_584762.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi] gi|19068798|emb|CAD25266.1|... |
| Match: gi|14520857|ref|NP_126332.1| |
score: 45.82 |
e-value: 0.00073 |
Identity: 32.86% |
Span: 210bp (31.0%) |
Frame: 2 |
| gi|14520857|ref|NP_126332.1| snRNP, putative [Pyrococcus abyssi] gi|10720266|sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-l... |
| Match: gi|9837170|gb|AAG00459.1| |
score: 45.82 |
e-value: 0.00073 |
Identity: 40.91% |
Span: 198bp (29.2%) |
Frame: 2 |
| gi|9837170|gb|AAG00459.1| Sm-F [Trypanosoma brucei] |
| Match: gi|13812032|ref|NP_113163.1| |
score: 44.28 |
e-value: 0.002 |
Identity: 37.31% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|13812032|ref|NP_113163.1| small nuclear ribonucleoprotein F [Guillardia theta] gi|25329696|pir||C90130 small nucle... |
| Match: gi|18860007|ref|NP_573139.1| |
score: 43.13 |
e-value: 0.005 |
Identity: 31.34% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|18860007|ref|NP_573139.1| CG9742-PA [Drosophila melanogaster] gi|29428065|sp|Q9VXE0|RUXG_DROME Probable small nucl... |
| Match: gi|19113214|ref|NP_596422.1| |
score: 43.13 |
e-value: 0.005 |
Identity: 40.28% |
Span: 213bp (31.4%) |
Frame: 2 |
| gi|19113214|ref|NP_596422.1| small nuclear ribonucleoprotein [Schizosaccharomyces pombe] gi|6094213|sp|O74966|RUXG_SC... |
| Match: gi|48852496|ref|ZP_00306682.1| |
score: 42.74 |
e-value: 0.006 |
Identity: 26.87% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|48852496|ref|ZP_00306682.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Ferroplasma acidarmanus] |
| Match: gi|15920992|ref|NP_376661.1| |
score: 42.74 |
e-value: 0.006 |
Identity: 37.93% |
Span: 174bp (25.7%) |
Frame: 2 |
| gi|15920992|ref|NP_376661.1| 79aa long hypothetical small nuclear ribonucleoprotein [Sulfolobus tokodaii] gi|15621776... |
| Match: gi|47207638|emb|CAF90891.1| |
score: 42.36 |
e-value: 0.008 |
Identity: 31.34% |
Span: 201bp (29.6%) |
Frame: 2 |
| gi|47207638|emb|CAF90891.1| unnamed protein product [Tetraodon nigroviridis] |
|
| arabidopsis/peptide [blastx] | Showing best 7 hits recorded |
| Match: At2g43810.1 |
score: 161.4 |
e-value: 3.5e-40 |
Identity: 87.91% |
Span: 270bp (39.8%) |
Frame: 2 |
| At2g43810.1 68409.m04923 small nuclear ribonucleo protein polypeptide F -related |
| Match: At3g59810.1 |
score: 155.2 |
e-value: 2.5e-38 |
Identity: 86.81% |
Span: 270bp (39.8%) |
Frame: 2 |
| At3g59810.1 68410.m06169 U6 snRNA-associated Sm-related protein U6 snRNA-associated Sm-like protein LSm6 - Homo sapie... |
| Match: At4g30220.1 |
score: 73.94 |
e-value: 7.4e-14 |
Identity: 48.48% |
Span: 198bp (29.2%) |
Frame: 2 |
| At4g30220.1 68411.m03923 snRNP Sm protein F - like Sm protein F, Homo sapiens, PIR:S55053 |
| Match: At5g27720.1 |
score: 39.28 |
e-value: 0.002 |
Identity: 31.34% |
Span: 198bp (29.2%) |
Frame: 2 |
| At5g27720.1 68412.m03030 glycine rich protein - like glycine rich protein, Nicotiana tabacum, PIR:S54169 |
| Match: At2g23930.1 |
score: 37.74 |
e-value: 0.006 |
Identity: 33.8% |
Span: 213bp (31.4%) |
Frame: 2 |
| At2g23930.1 68409.m02588 small nuclear ribonucleo protein E -related |
| Match: At1g76860.1 |
score: 37.35 |
e-value: 0.008 |
Identity: 25.26% |
Span: 246bp (36.3%) |
Frame: 2 |
| At1g76860.1 68408.m08211 Sm-related protein contains Pfam profile: PF01423: Sm protein |
| Match: At3g11500.1 |
score: 36.96 |
e-value: 0.01 |
Identity: 33.8% |
Span: 213bp (31.4%) |
Frame: 2 |
| At3g11500.1 68410.m01266 small nuclear ribonucleo protein polypeptide G -related similar to small nuclear ribonucleop... |
|
