| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|7363220|emb|CAB83107.1| |
score: 201.4 |
e-value: 7.2e-51 |
Identity: 53.63% |
Span: 534bp (85.6%) |
Frame: 2 |
| sigma factor 3 [Sinapis alba] |
| Match: gi|15232364|ref|NP_190960.1| |
score: 200.7 |
e-value: 1.2e-50 |
Identity: 55.68% |
Span: 525bp (84.1%) |
Frame: 2 |
| SIGC (RNA POLYMERASE SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|22135904|gb|AAM91534.1| |
score: 200.7 |
e-value: 1.2e-50 |
Identity: 55.68% |
Span: 525bp (84.1%) |
Frame: 2 |
| sigma factor SigC [Arabidopsis thaliana] |
| Match: gi|2398853|dbj|BAA22215.1| |
score: 199.9 |
e-value: 2.1e-50 |
Identity: 55.68% |
Span: 525bp (84.1%) |
Frame: 2 |
| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] |
| Match: gi|12697780|dbj|BAB21618.1| |
score: 121.3 |
e-value: 9.4e-27 |
Identity: 30.68% |
Span: 528bp (84.6%) |
Frame: 2 |
| gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens] gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens] |
| Match: gi|7363218|emb|CAB83106.1| |
score: 112.8 |
e-value: 3.4e-24 |
Identity: 33.53% |
Span: 510bp (81.7%) |
Frame: 2 |
| sigma factor 2 [Sinapis alba] |
| Match: gi|1519642|gb|AAB07554.1| |
score: 105.9 |
e-value: 3.6e-27 |
Identity: 32.48% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|1519642|gb|AAB07554.1| SigD [Chloroflexus aurantiacus] |
| Match: gi|15644718|ref|NP_206888.1| |
score: 103.6 |
e-value: 3e-26 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|15644718|ref|NP_206888.1| RNA polymerase sigma-70 factor (rpoD) [Helicobacter pylori 26695] gi|2500785|sp|P55993|R... |
| Match: gi|5921146|dbj|BAA84590.1| |
score: 103.6 |
e-value: 3e-26 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|5921146|dbj|BAA84590.1| RNA polymerase sigma 70 [Helicobacter pylori] |
| Match: gi|20808174|ref|NP_623345.1| |
score: 103.2 |
e-value: 1.9e-25 |
Identity: 28.99% |
Span: 507bp (81.2%) |
Frame: 2 |
| gi|20808174|ref|NP_623345.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) [Thermoanaerobacter tengcon... |
| Match: gi|23018266|ref|ZP_00057984.1| |
score: 103.2 |
e-value: 5.4e-25 |
Identity: 31.21% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|23018266|ref|ZP_00057984.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Thermobifida fu... |
| Match: gi|15611152|ref|NP_222803.1| |
score: 102.4 |
e-value: 6.5e-26 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|15611152|ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99] gi|11387124|sp|Q9ZMY3|R... |
| Match: gi|2267165|gb|AAC64856.1| |
score: 102.4 |
e-value: 6.5e-26 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|2267165|gb|AAC64856.1| sigma 80 [Helicobacter pylori] |
| Match: gi|2522316|gb|AAB81010.1| |
score: 102.4 |
e-value: 6.5e-26 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|2522316|gb|AAB81010.1| RNA polymerase principal sigma factor RpoD [Helicobacter pylori] |
| Match: gi|2117930|pir||S61292 |
score: 102.1 |
e-value: 3e-26 |
Identity: 32.48% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|2117930|pir||S61292 transcription initiation factor sigma mysA - Mycobacterium smegmatis gi|555680|gb|AAA85642.1| ... |
| Match: gi|4587113|dbj|BAA76622.1| |
score: 102.1 |
e-value: 3e-26 |
Identity: 32.48% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae] |
| Match: gi|15827492|ref|NP_301755.1| |
score: 102.1 |
e-value: 3e-26 |
Identity: 32.48% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae] gi|25288489|pir||H87036 RNA polymeras... |
| Match: gi|18477828|emb|CAC83737.1| |
score: 102.1 |
e-value: 3e-26 |
Identity: 32.48% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians] |
| Match: gi|37520903|ref|NP_924280.1| |
score: 101.7 |
e-value: 1.1e-25 |
Identity: 33.33% |
Span: 468bp (75.0%) |
Frame: 2 |
| gi|37520903|ref|NP_924280.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35211898|dbj|BAC89275.1| g... |
| Match: gi|28211633|ref|NP_782577.1| |
score: 101.7 |
e-value: 4.2e-25 |
Identity: 29.59% |
Span: 507bp (81.2%) |
Frame: 2 |
| gi|28211633|ref|NP_782577.1| RNA polymerase sigma factor rpoD [Clostridium tetani E88] gi|28204075|gb|AAO36514.1| RNA... |
| Match: gi|22972257|ref|ZP_00019146.1| |
score: 101.3 |
e-value: 8.6e-26 |
Identity: 31.21% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|22972257|ref|ZP_00019146.1| hypothetical protein [Chloroflexus aurantiacus] |
| Match: gi|1072017|gb|AAA81640.1| |
score: 100.9 |
e-value: 6.6e-26 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|1072017|gb|AAA81640.1| sigma factor gi|1072019|gb|AAA81641.1| sigma factor |
| Match: gi|1072021|gb|AAA81642.1| |
score: 100.9 |
e-value: 2.4e-25 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|1072021|gb|AAA81642.1| sigma factor |
| Match: gi|15609840|ref|NP_217219.1| |
score: 100.9 |
e-value: 6.6e-26 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|15609840|ref|NP_217219.1| sigA [Mycobacterium tuberculosis H37Rv] gi|15842241|ref|NP_337278.1| RNA polymerase prin... |
| Match: gi|19553123|ref|NP_601125.1| |
score: 100.1 |
e-value: 1.5e-25 |
Identity: 31.01% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|19553123|ref|NP_601125.1| DNA-directed RNA polymerase sigma subunit SigB [Corynebacterium glutamicum ATCC 13032] g... |
| Match: gi|16752284|ref|NP_445653.1| |
score: 100.1 |
e-value: 1.5e-24 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|16752284|ref|NP_445653.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila pneumoniae AR39] gi|11261352... |
| Match: gi|15618665|ref|NP_224951.1| |
score: 100.1 |
e-value: 1.5e-24 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|15618665|ref|NP_224951.1| RNA Polymerase Sigma-66 [Chlamydophila pneumoniae CWL029] gi|15836289|ref|NP_300813.1| R... |
| Match: gi|12958494|gb|AAK09322.1| |
score: 99.37 |
e-value: 2.5e-25 |
Identity: 30.38% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|12958494|gb|AAK09322.1| sigma factor SigB [Brevibacterium flavum] |
| Match: gi|2117918|pir||I40872 |
score: 98.98 |
e-value: 3.4e-24 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|2117918|pir||I40872 transcription initiation factor sigma 70 - Chlamydophila psittaci gi|520418|gb|AAA50747.1| maj... |
| Match: gi|29840756|ref|NP_829862.1| |
score: 98.98 |
e-value: 3.4e-24 |
Identity: 33.12% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|29840756|ref|NP_829862.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila caviae GPIC] gi|29835106|gb|... |
| Match: gi|23308878|ref|NP_601117.2| |
score: 98.6 |
e-value: 7e-25 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|23308878|ref|NP_601117.2| DNA-directed RNA polymerase sigma subunit SigA [Corynebacterium glutamicum ATCC 13032] g... |
| Match: gi|15835519|ref|NP_297278.1| |
score: 98.6 |
e-value: 4.4e-24 |
Identity: 32.48% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|15835519|ref|NP_297278.1| RNA polymerase sigma factor RpoD [Chlamydia muridarum] gi|7388084|sp|P56835|RPSD_CHLMU R... |
| Match: gi|1149588|emb|CAA89984.1| |
score: 98.6 |
e-value: 3.4e-24 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|1149588|emb|CAA89984.1| SigA sigma factor [Corynebacterium glutamicum] |
| Match: gi|25028360|ref|NP_738414.1| |
score: 98.6 |
e-value: 7e-25 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|25028360|ref|NP_738414.1| sigma factor SigA [Corynebacterium efficiens YS-314] gi|23493645|dbj|BAC18614.1| sigma f... |
| Match: gi|12958492|gb|AAK09321.1| |
score: 98.6 |
e-value: 7e-25 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|12958492|gb|AAK09321.1| sigma factor SigA [Brevibacterium flavum] |
| Match: gi|418631|pir||RNCW7H |
score: 98.6 |
e-value: 4.4e-24 |
Identity: 32.48% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|418631|pir||RNCW7H transcription initiation factor sigma 70 - Chlamydia trachomatis gi|144616|gb|AAA23168.1| sigma... |
| Match: gi|15827487|ref|NP_301750.1| |
score: 98.21 |
e-value: 3.2e-25 |
Identity: 31.65% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|15827487|ref|NP_301750.1| RNA polymerase sigma factor [Mycobacterium leprae] gi|25288468|pir||H87035 RNA polymeras... |
| Match: gi|38233991|ref|NP_939758.1| |
score: 98.21 |
e-value: 9.2e-25 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|38233991|ref|NP_939758.1| RNA polymerase sigma factor [Corynebacterium diphtheriae] gi|38200253|emb|CAE49937.1| RN... |
| Match: gi|13195265|gb|AAK15630.1| |
score: 97.83 |
e-value: 1.2e-24 |
Identity: 31.85% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|13195265|gb|AAK15630.1| RNA polymerase major sigma subunit [Corynebacterium ammoniagenes] |
| Match: gi|25028367|ref|NP_738421.1| |
score: 97.44 |
e-value: 1.6e-24 |
Identity: 30.38% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|25028367|ref|NP_738421.1| sigma factor SigB [Corynebacterium efficiens YS-314] gi|23493652|dbj|BAC18621.1| sigma f... |
| Match: gi|2127479|pir||JC5011 |
score: 97.06 |
e-value: 7.1e-25 |
Identity: 31.65% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|2127479|pir||JC5011 transcription initiation factor sigma B - Mycobacterium tuberculosis |
| Match: gi|1657704|gb|AAC44535.1| |
score: 97.06 |
e-value: 7.1e-25 |
Identity: 31.65% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|1657704|gb|AAC44535.1| sigma factor MytB |
| Match: gi|15609847|ref|NP_217226.1| |
score: 97.06 |
e-value: 7.1e-25 |
Identity: 31.65% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|15609847|ref|NP_217226.1| sigB [Mycobacterium tuberculosis H37Rv] gi|15842248|ref|NP_337285.1| RNA polymerase prin... |
| Match: gi|16079575|ref|NP_390399.1| |
score: 95.9 |
e-value: 2e-24 |
Identity: 29.11% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|16079575|ref|NP_390399.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis] gi|133466|sp|P06224|R... |
| Match: gi|23037952|ref|ZP_00070144.1| |
score: 95.13 |
e-value: 1.5e-24 |
Identity: 28.99% |
Span: 507bp (81.2%) |
Frame: 2 |
| gi|23037952|ref|ZP_00070144.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Oenococcus oeni... |
| Match: gi|23017717|ref|ZP_00057441.1| |
score: 94.74 |
e-value: 1.5e-24 |
Identity: 29.94% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|23017717|ref|ZP_00057441.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Thermobifida fu... |
| Match: gi|29832222|ref|NP_826856.1| |
score: 93.97 |
e-value: 1.6e-24 |
Identity: 29.94% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|29832222|ref|NP_826856.1| putative RNA polymerase sigma factor [Streptomyces avermitilis MA-4680] gi|29609340|dbj|... |
| Match: gi|22977776|ref|ZP_00023560.1| |
score: 93.2 |
e-value: 2e-24 |
Identity: 27.85% |
Span: 474bp (76.0%) |
Frame: 2 |
| gi|22977776|ref|ZP_00023560.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Ralstonia metal... |
| Match: gi|11132962|sp|P77951|HRDB_STRGR |
score: 93.2 |
e-value: 4.4e-24 |
Identity: 29.3% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|11132962|sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB gi|1617256|gb|AAB16905.1| principal sigma... |
| Match: gi|419697|pir||JN0443 |
score: 93.2 |
e-value: 4.4e-24 |
Identity: 29.3% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|419697|pir||JN0443 transcription initiation factor sigma homolog hrdB - Streptomyces aureofaciens gi|153306|gb|AAA... |
| Match: gi|21220928|ref|NP_626707.1| |
score: 91.28 |
e-value: 1.6e-24 |
Identity: 29.3% |
Span: 471bp (75.5%) |
Frame: 2 |
| gi|21220928|ref|NP_626707.1| RNA polymerase principal sigma factor [Streptomyces coelicolor A3(2)] gi|19856645|sp|P18... |
| Match: gi|2398853|dbj|BAA22215.1| |
score: 52.37 |
e-value: 5.4e-06 |
Identity: 62.5% |
Span: 120bp (19.2%) |
Frame: 1 |
| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] |
| Match: gi|15232364|ref|NP_190960.1| |
score: 50.83 |
e-value: 1.6e-05 |
Identity: 62.5% |
Span: 120bp (19.2%) |
Frame: 1 |
| SIGC (RNA POLYMERASE SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|22135904|gb|AAM91534.1| |
score: 50.83 |
e-value: 1.6e-05 |
Identity: 62.5% |
Span: 120bp (19.2%) |
Frame: 1 |
| sigma factor SigC [Arabidopsis thaliana] |
| Match: gi|7363220|emb|CAB83107.1| |
score: 45.44 |
e-value: 0.00066 |
Identity: 57.5% |
Span: 120bp (19.2%) |
Frame: 1 |
| sigma factor 3 [Sinapis alba] |
| Match: gi|21220928|ref|NP_626707.1| |
score: 43.51 |
e-value: 1.6e-24 |
Identity: 52.5% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|21220928|ref|NP_626707.1| RNA polymerase principal sigma factor [Streptomyces coelicolor A3(2)] gi|19856645|sp|P18... |
| Match: gi|22977776|ref|ZP_00023560.1| |
score: 41.2 |
e-value: 2e-24 |
Identity: 58.06% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|22977776|ref|ZP_00023560.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Ralstonia metal... |
| Match: gi|29832222|ref|NP_826856.1| |
score: 40.82 |
e-value: 1.6e-24 |
Identity: 47.5% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|29832222|ref|NP_826856.1| putative RNA polymerase sigma factor [Streptomyces avermitilis MA-4680] gi|29609340|dbj|... |
| Match: gi|11132962|sp|P77951|HRDB_STRGR |
score: 40.05 |
e-value: 4.4e-24 |
Identity: 54.84% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|11132962|sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB gi|1617256|gb|AAB16905.1| principal sigma... |
| Match: gi|23017717|ref|ZP_00057441.1| |
score: 40.05 |
e-value: 1.5e-24 |
Identity: 54.84% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|23017717|ref|ZP_00057441.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Thermobifida fu... |
| Match: gi|419697|pir||JN0443 |
score: 40.05 |
e-value: 4.4e-24 |
Identity: 54.84% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|419697|pir||JN0443 transcription initiation factor sigma homolog hrdB - Streptomyces aureofaciens gi|153306|gb|AAA... |
| Match: gi|23037952|ref|ZP_00070144.1| |
score: 39.66 |
e-value: 1.5e-24 |
Identity: 58.62% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|23037952|ref|ZP_00070144.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Oenococcus oeni... |
| Match: gi|1657704|gb|AAC44535.1| |
score: 38.89 |
e-value: 7.1e-25 |
Identity: 40.48% |
Span: 126bp (20.2%) |
Frame: 1 |
| gi|1657704|gb|AAC44535.1| sigma factor MytB |
| Match: gi|2127479|pir||JC5011 |
score: 38.89 |
e-value: 7.1e-25 |
Identity: 40.48% |
Span: 126bp (20.2%) |
Frame: 1 |
| gi|2127479|pir||JC5011 transcription initiation factor sigma B - Mycobacterium tuberculosis |
| Match: gi|15827487|ref|NP_301750.1| |
score: 38.89 |
e-value: 3.2e-25 |
Identity: 40.48% |
Span: 126bp (20.2%) |
Frame: 1 |
| gi|15827487|ref|NP_301750.1| RNA polymerase sigma factor [Mycobacterium leprae] gi|25288468|pir||H87035 RNA polymeras... |
| Match: gi|15609847|ref|NP_217226.1| |
score: 38.89 |
e-value: 7.1e-25 |
Identity: 40.48% |
Span: 126bp (20.2%) |
Frame: 1 |
| gi|15609847|ref|NP_217226.1| sigB [Mycobacterium tuberculosis H37Rv] gi|15842248|ref|NP_337285.1| RNA polymerase prin... |
| Match: gi|4587113|dbj|BAA76622.1| |
score: 38.51 |
e-value: 3e-26 |
Identity: 51.61% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae] |
| Match: gi|15609840|ref|NP_217219.1| |
score: 38.51 |
e-value: 6.6e-26 |
Identity: 51.61% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|15609840|ref|NP_217219.1| sigA [Mycobacterium tuberculosis H37Rv] gi|15842241|ref|NP_337278.1| RNA polymerase prin... |
| Match: gi|1072017|gb|AAA81640.1| |
score: 38.51 |
e-value: 6.6e-26 |
Identity: 51.61% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|1072017|gb|AAA81640.1| sigma factor gi|1072019|gb|AAA81641.1| sigma factor |
| Match: gi|2117930|pir||S61292 |
score: 38.51 |
e-value: 3e-26 |
Identity: 51.61% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|2117930|pir||S61292 transcription initiation factor sigma mysA - Mycobacterium smegmatis gi|555680|gb|AAA85642.1| ... |
| Match: gi|18477828|emb|CAC83737.1| |
score: 38.51 |
e-value: 3e-26 |
Identity: 51.61% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians] |
| Match: gi|15827492|ref|NP_301755.1| |
score: 38.51 |
e-value: 3e-26 |
Identity: 51.61% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae] gi|25288489|pir||H87036 RNA polymeras... |
| Match: gi|16079575|ref|NP_390399.1| |
score: 38.51 |
e-value: 2e-24 |
Identity: 55.17% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|16079575|ref|NP_390399.1| RNA polymerase major sigma-43 factor (sigma-A) [Bacillus subtilis] gi|133466|sp|P06224|R... |
| Match: gi|19553123|ref|NP_601125.1| |
score: 38.12 |
e-value: 1.5e-25 |
Identity: 40% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|19553123|ref|NP_601125.1| DNA-directed RNA polymerase sigma subunit SigB [Corynebacterium glutamicum ATCC 13032] g... |
| Match: gi|12958494|gb|AAK09322.1| |
score: 38.12 |
e-value: 2.5e-25 |
Identity: 40% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|12958494|gb|AAK09322.1| sigma factor SigB [Brevibacterium flavum] |
| Match: gi|1519642|gb|AAB07554.1| |
score: 37.74 |
e-value: 3.6e-27 |
Identity: 51.61% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|1519642|gb|AAB07554.1| SigD [Chloroflexus aurantiacus] |
| Match: gi|22972257|ref|ZP_00019146.1| |
score: 37.74 |
e-value: 8.6e-26 |
Identity: 51.61% |
Span: 93bp (14.9%) |
Frame: 1 |
| gi|22972257|ref|ZP_00019146.1| hypothetical protein [Chloroflexus aurantiacus] |
| Match: gi|23308878|ref|NP_601117.2| |
score: 37.35 |
e-value: 7e-25 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|23308878|ref|NP_601117.2| DNA-directed RNA polymerase sigma subunit SigA [Corynebacterium glutamicum ATCC 13032] g... |
| Match: gi|13195265|gb|AAK15630.1| |
score: 37.35 |
e-value: 1.2e-24 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|13195265|gb|AAK15630.1| RNA polymerase major sigma subunit [Corynebacterium ammoniagenes] |
| Match: gi|38233991|ref|NP_939758.1| |
score: 37.35 |
e-value: 9.2e-25 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|38233991|ref|NP_939758.1| RNA polymerase sigma factor [Corynebacterium diphtheriae] gi|38200253|emb|CAE49937.1| RN... |
| Match: gi|12958492|gb|AAK09321.1| |
score: 37.35 |
e-value: 7e-25 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|12958492|gb|AAK09321.1| sigma factor SigA [Brevibacterium flavum] |
| Match: gi|25028367|ref|NP_738421.1| |
score: 37.35 |
e-value: 1.6e-24 |
Identity: 40% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|25028367|ref|NP_738421.1| sigma factor SigB [Corynebacterium efficiens YS-314] gi|23493652|dbj|BAC18621.1| sigma f... |
| Match: gi|25028360|ref|NP_738414.1| |
score: 37.35 |
e-value: 7e-25 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|25028360|ref|NP_738414.1| sigma factor SigA [Corynebacterium efficiens YS-314] gi|23493645|dbj|BAC18614.1| sigma f... |
| Match: gi|2522316|gb|AAB81010.1| |
score: 36.96 |
e-value: 6.5e-26 |
Identity: 45% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|2522316|gb|AAB81010.1| RNA polymerase principal sigma factor RpoD [Helicobacter pylori] |
| Match: gi|15611152|ref|NP_222803.1| |
score: 36.96 |
e-value: 6.5e-26 |
Identity: 45% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|15611152|ref|NP_222803.1| RNA POLYMERASE SIGMA FACTOR (SIGMA-70) [Helicobacter pylori J99] gi|11387124|sp|Q9ZMY3|R... |
| Match: gi|2267165|gb|AAC64856.1| |
score: 36.96 |
e-value: 6.5e-26 |
Identity: 45% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|2267165|gb|AAC64856.1| sigma 80 [Helicobacter pylori] |
| Match: gi|15644718|ref|NP_206888.1| |
score: 36.96 |
e-value: 3e-26 |
Identity: 45% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|15644718|ref|NP_206888.1| RNA polymerase sigma-70 factor (rpoD) [Helicobacter pylori 26695] gi|2500785|sp|P55993|R... |
| Match: gi|5921146|dbj|BAA84590.1| |
score: 36.96 |
e-value: 3e-26 |
Identity: 45% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|5921146|dbj|BAA84590.1| RNA polymerase sigma 70 [Helicobacter pylori] |
| Match: gi|37520903|ref|NP_924280.1| |
score: 36.96 |
e-value: 1.1e-25 |
Identity: 40% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|37520903|ref|NP_924280.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35211898|dbj|BAC89275.1| g... |
| Match: gi|1072021|gb|AAA81642.1| |
score: 36.58 |
e-value: 2.4e-25 |
Identity: 50% |
Span: 90bp (14.4%) |
Frame: 1 |
| gi|1072021|gb|AAA81642.1| sigma factor |
| Match: gi|28211633|ref|NP_782577.1| |
score: 35.04 |
e-value: 4.2e-25 |
Identity: 42.5% |
Span: 120bp (19.2%) |
Frame: 1 |
| gi|28211633|ref|NP_782577.1| RNA polymerase sigma factor rpoD [Clostridium tetani E88] gi|28204075|gb|AAO36514.1| RNA... |
| Match: gi|1149588|emb|CAA89984.1| |
score: 35.04 |
e-value: 3.4e-24 |
Identity: 48.28% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|1149588|emb|CAA89984.1| SigA sigma factor [Corynebacterium glutamicum] |
| Match: gi|29840756|ref|NP_829862.1| |
score: 34.65 |
e-value: 3.4e-24 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|29840756|ref|NP_829862.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila caviae GPIC] gi|29835106|gb|... |
| Match: gi|16752284|ref|NP_445653.1| |
score: 34.65 |
e-value: 1.5e-24 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|16752284|ref|NP_445653.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila pneumoniae AR39] gi|11261352... |
| Match: gi|20808174|ref|NP_623345.1| |
score: 34.65 |
e-value: 1.9e-25 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|20808174|ref|NP_623345.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) [Thermoanaerobacter tengcon... |
| Match: gi|15618665|ref|NP_224951.1| |
score: 34.65 |
e-value: 1.5e-24 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|15618665|ref|NP_224951.1| RNA Polymerase Sigma-66 [Chlamydophila pneumoniae CWL029] gi|15836289|ref|NP_300813.1| R... |
| Match: gi|2117918|pir||I40872 |
score: 34.65 |
e-value: 3.4e-24 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|2117918|pir||I40872 transcription initiation factor sigma 70 - Chlamydophila psittaci gi|520418|gb|AAA50747.1| maj... |
| Match: gi|418631|pir||RNCW7H |
score: 34.65 |
e-value: 4.4e-24 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|418631|pir||RNCW7H transcription initiation factor sigma 70 - Chlamydia trachomatis gi|144616|gb|AAA23168.1| sigma... |
| Match: gi|15835519|ref|NP_297278.1| |
score: 34.65 |
e-value: 4.4e-24 |
Identity: 51.72% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|15835519|ref|NP_297278.1| RNA polymerase sigma factor RpoD [Chlamydia muridarum] gi|7388084|sp|P56835|RPSD_CHLMU R... |
| Match: gi|23018266|ref|ZP_00057984.1| |
score: 33.11 |
e-value: 5.4e-25 |
Identity: 44.83% |
Span: 87bp (13.9%) |
Frame: 1 |
| gi|23018266|ref|ZP_00057984.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Thermobifida fu... |
|
| 339 lower scoring hits censored -- only 100 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 9 hits recorded |
| Match: At3g53920.1 |
score: 200.7 |
e-value: 4.6e-52 |
Identity: 55.68% |
Span: 525bp (84.1%) |
Frame: 2 |
| At3g53920.1 68410.m05512 sigma factor SigC |
| Match: At1g08540.1 |
score: 110.2 |
e-value: 8.1e-25 |
Identity: 32.94% |
Span: 510bp (81.7%) |
Frame: 2 |
| At1g08540.1 68408.m00853 plastid RNA polymerase sigma-subunit -related similar to GB:BAA22427 and EST gb N65838 |
| Match: At2g36990.1 |
score: 90.12 |
e-value: 8.7e-19 |
Identity: 28.41% |
Span: 528bp (84.6%) |
Frame: 2 |
| At2g36990.1 68409.m04106 RNA polymerase sigma-70 factor -related |
| Match: At5g13730.1 |
score: 84.34 |
e-value: 4.8e-17 |
Identity: 28.16% |
Span: 522bp (83.7%) |
Frame: 2 |
| At5g13730.1 68412.m01474 sigma-related factor (gb|AAC97954.1) |
| Match: At1g64860.1 |
score: 60.85 |
e-value: 5.7e-10 |
Identity: 22.58% |
Span: 525bp (84.1%) |
Frame: 2 |
| At1g64860.1 68408.m06739 plastid RNA polymerase sigma-subunit identical to plastid RNA polymerase sigma-subunit GI:23... |
| Match: At5g24120.1 |
score: 57 |
e-value: 8.2e-09 |
Identity: 26.42% |
Span: 468bp (75.0%) |
Frame: 2 |
| At5g24120.1 68412.m02593 sigma-related factor (emb CAA77213.1) |
| Match: At3g53920.1 |
score: 50.83 |
e-value: 5.9e-07 |
Identity: 62.5% |
Span: 120bp (19.2%) |
Frame: 1 |
| At3g53920.1 68410.m05512 sigma factor SigC |
| Match: At2g36990.1 |
score: 40.82 |
e-value: 0.00061 |
Identity: 45.24% |
Span: 126bp (20.2%) |
Frame: 1 |
| At2g36990.1 68409.m04106 RNA polymerase sigma-70 factor -related |
| Match: At1g08540.1 |
score: 38.89 |
e-value: 0.002 |
Identity: 45% |
Span: 120bp (19.2%) |
Frame: 1 |
| At1g08540.1 68408.m00853 plastid RNA polymerase sigma-subunit -related similar to GB:BAA22427 and EST gb N65838 |
|
