| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|18404292|ref|NP_565856.1| |
score: 98.21 |
e-value: 7.6e-20 |
Identity: 41.84% |
Span: 423bp (71.6%) |
Frame: 3 |
| SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|25456197|pir||T52653 |
score: 98.21 |
e-value: 7.6e-20 |
Identity: 41.84% |
Span: 423bp (71.6%) |
Frame: 3 |
| gi|25456197|pir||T52653 probable sigma-like transcription initiation factor [imported] - Arabidopsis thaliana (fragme... |
| Match: gi|25408520|pir||B84787 |
score: 97.83 |
e-value: 9.9e-20 |
Identity: 48.67% |
Span: 339bp (57.4%) |
Frame: 3 |
| gi|25408520|pir||B84787 probable RNA polymerase sigma-70 factor [imported] - Arabidopsis thaliana |
| Match: gi|30698490|dbj|BAC76602.1| |
score: 94.74 |
e-value: 8.4e-19 |
Identity: 42.86% |
Span: 354bp (59.9%) |
Frame: 3 |
| gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|39840781|emb|CAD20831.1| |
score: 74.71 |
e-value: 9e-13 |
Identity: 35.88% |
Span: 390bp (66.0%) |
Frame: 3 |
| gi|39840781|emb|CAD20831.1| sigma factor [Spinacia oleracea] |
| Match: gi|4336610|gb|AAD17856.1| |
score: 70.48 |
e-value: 1.7e-11 |
Identity: 40.34% |
Span: 351bp (59.4%) |
Frame: 3 |
| gi|4336610|gb|AAD17856.1| sigma factor SIG6; ZmSIG6 [Zea mays] |
| Match: gi|15223259|ref|NP_172330.1| |
score: 68.94 |
e-value: 4.9e-11 |
Identity: 32.54% |
Span: 375bp (63.5%) |
Frame: 3 |
| SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|7363218|emb|CAB83106.1| |
score: 68.55 |
e-value: 6.4e-11 |
Identity: 32.52% |
Span: 366bp (61.9%) |
Frame: 3 |
| sigma factor 2 [Sinapis alba] |
| Match: gi|26452898|dbj|BAC43527.1| |
score: 68.17 |
e-value: 8.4e-11 |
Identity: 32.54% |
Span: 375bp (63.5%) |
Frame: 3 |
| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana] |
| Match: gi|2353173|gb|AAB69385.1| |
score: 63.93 |
e-value: 1.6e-09 |
Identity: 32.03% |
Span: 375bp (63.5%) |
Frame: 3 |
| sigma factor 2 [Arabidopsis thaliana] |
| Match: gi|12697780|dbj|BAB21618.1| |
score: 49.29 |
e-value: 4e-05 |
Identity: 33.64% |
Span: 318bp (53.8%) |
Frame: 3 |
| gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens] gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens] |
| Match: gi|32351878|dbj|BAC78528.1| |
score: 47.75 |
e-value: 0.00012 |
Identity: 28.07% |
Span: 342bp (57.9%) |
Frame: 3 |
| plastid sigma factor 2A [Oryza sativa Japonica Group] |
| Match: gi|4336606|gb|AAD17854.1| |
score: 46.98 |
e-value: 0.0002 |
Identity: 27.97% |
Span: 354bp (59.9%) |
Frame: 3 |
| gi|4336606|gb|AAD17854.1| sigma factor SIG2A; ZmSIG2A [Zea mays] |
| Match: gi|34902100|ref|NP_912396.1| |
score: 46.98 |
e-value: 0.0002 |
Identity: 28.77% |
Span: 426bp (72.1%) |
Frame: 3 |
| gi|34902100|ref|NP_912396.1| unknown protein [Oryza sativa (japonica cultivar-group)] gi|29893614|gb|AAP06868.1| unkn... |
| Match: gi|6463980|dbj|BAA86957.1| |
score: 44.28 |
e-value: 0.001 |
Identity: 40% |
Span: 207bp (35.0%) |
Frame: 3 |
| gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942] |
| Match: gi|1769596|gb|AAB39997.1| |
score: 43.9 |
e-value: 0.002 |
Identity: 35.29% |
Span: 204bp (34.5%) |
Frame: 3 |
| gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp.] |
| Match: gi|37523331|ref|NP_926708.1| |
score: 43.9 |
e-value: 0.002 |
Identity: 33.03% |
Span: 300bp (50.8%) |
Frame: 3 |
| gi|37523331|ref|NP_926708.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35214335|dbj|BAC91703.1| g... |
| Match: gi|45509866|ref|ZP_00162199.1| |
score: 43.51 |
e-value: 0.002 |
Identity: 45.1% |
Span: 153bp (25.9%) |
Frame: 3 |
| gi|45509866|ref|ZP_00162199.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Anabaena variab... |
| Match: gi|23128093|ref|ZP_00109949.1| |
score: 43.13 |
e-value: 0.003 |
Identity: 32.94% |
Span: 246bp (41.6%) |
Frame: 3 |
| gi|23128093|ref|ZP_00109949.1| hypothetical protein [Nostoc punctiforme] gi|8118663|gb|AAF73062.1| primary vegetative... |
| Match: gi|23126581|ref|ZP_00108472.1| |
score: 43.13 |
e-value: 0.003 |
Identity: 28.12% |
Span: 288bp (48.7%) |
Frame: 3 |
| gi|23126581|ref|ZP_00108472.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|1588486|prf||2208419B |
score: 42.74 |
e-value: 0.004 |
Identity: 36.36% |
Span: 198bp (33.5%) |
Frame: 3 |
| RNA polymerase sigma factor |
| Match: gi|17232755|ref|NP_489303.1| |
score: 42.74 |
e-value: 0.004 |
Identity: 30.68% |
Span: 255bp (43.1%) |
Frame: 3 |
| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120] >gi75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD ... |
| Match: gi|558881|gb|AAB41506.1| |
score: 42.74 |
e-value: 0.004 |
Identity: 36.36% |
Span: 198bp (33.5%) |
Frame: 3 |
| gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] |
| Match: gi|19910026|dbj|BAB87264.1| |
score: 42.74 |
e-value: 0.004 |
Identity: 30.1% |
Span: 309bp (52.3%) |
Frame: 3 |
| gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa] |
| Match: gi|4218586|emb|CAA10725.1| |
score: 41.59 |
e-value: 0.008 |
Identity: 33.85% |
Span: 195bp (33.0%) |
Frame: 3 |
| gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum] |
|
| arabidopsis/peptide [blastx] | Showing best 2 hits recorded |
| Match: At2g36990.1 |
score: 98.21 |
e-value: 2.5e-21 |
Identity: 41.84% |
Span: 423bp (71.6%) |
Frame: 3 |
| At2g36990.1 68409.m04106 RNA polymerase sigma-70 factor -related |
| Match: At1g08540.1 |
score: 68.94 |
e-value: 1.6e-12 |
Identity: 32.54% |
Span: 375bp (63.5%) |
Frame: 3 |
| At1g08540.1 68408.m00853 plastid RNA polymerase sigma-subunit -related similar to GB:BAA22427 and EST gb N65838 |
|
