| genbank/nr [blastx] | Showing best 41 hits recorded |
| Match: gi|25456197|pir||T52653 |
score: 98.21 |
e-value: 6.2e-20 |
Identity: 41.84% |
Span: 423bp (71.6%) |
Frame: 3 |
| gi|25456197|pir||T52653 probable sigma-like transcription initiation factor [imported] - Arabidopsis thaliana (fragme... |
| Match: gi|18404292|ref|NP_565856.1| |
score: 98.21 |
e-value: 6.2e-20 |
Identity: 41.84% |
Span: 423bp (71.6%) |
Frame: 3 |
| SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|25408520|pir||B84787 |
score: 97.83 |
e-value: 8.1e-20 |
Identity: 48.67% |
Span: 339bp (57.4%) |
Frame: 3 |
| gi|25408520|pir||B84787 probable RNA polymerase sigma-70 factor [imported] - Arabidopsis thaliana |
| Match: gi|30698490|dbj|BAC76602.1| |
score: 94.74 |
e-value: 6.9e-19 |
Identity: 42.86% |
Span: 354bp (59.9%) |
Frame: 3 |
| gi|30698490|dbj|BAC76602.1| Sig6 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|4336610|gb|AAD17856.1| |
score: 70.48 |
e-value: 1.4e-11 |
Identity: 40.34% |
Span: 351bp (59.4%) |
Frame: 3 |
| gi|4336610|gb|AAD17856.1| sigma factor SIG6; ZmSIG6 [Zea mays] |
| Match: gi|15223259|ref|NP_172330.1| |
score: 68.94 |
e-value: 4e-11 |
Identity: 32.54% |
Span: 375bp (63.5%) |
Frame: 3 |
| SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|7363218|emb|CAB83106.1| |
score: 68.55 |
e-value: 5.3e-11 |
Identity: 32.52% |
Span: 366bp (61.9%) |
Frame: 3 |
| sigma factor 2 [Sinapis alba] |
| Match: gi|26452898|dbj|BAC43527.1| |
score: 68.17 |
e-value: 6.9e-11 |
Identity: 32.54% |
Span: 375bp (63.5%) |
Frame: 3 |
| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana] |
| Match: gi|2353173|gb|AAB69385.1| |
score: 63.93 |
e-value: 1.3e-09 |
Identity: 32.03% |
Span: 375bp (63.5%) |
Frame: 3 |
| sigma factor 2 [Arabidopsis thaliana] |
| Match: gi|12697780|dbj|BAB21618.1| |
score: 49.29 |
e-value: 3.3e-05 |
Identity: 33.64% |
Span: 318bp (53.8%) |
Frame: 3 |
| gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens] gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens] |
| Match: gi|32351878|dbj|BAC78528.1| |
score: 47.75 |
e-value: 9.6e-05 |
Identity: 28.07% |
Span: 342bp (57.9%) |
Frame: 3 |
| plastid sigma factor 2A [Oryza sativa Japonica Group] |
| Match: gi|34902100|ref|NP_912396.1| |
score: 46.98 |
e-value: 0.00016 |
Identity: 28.77% |
Span: 426bp (72.1%) |
Frame: 3 |
| gi|34902100|ref|NP_912396.1| unknown protein [Oryza sativa (japonica cultivar-group)] gi|29893614|gb|AAP06868.1| unkn... |
| Match: gi|4336606|gb|AAD17854.1| |
score: 46.98 |
e-value: 0.00016 |
Identity: 27.97% |
Span: 354bp (59.9%) |
Frame: 3 |
| gi|4336606|gb|AAD17854.1| sigma factor SIG2A; ZmSIG2A [Zea mays] |
| Match: gi|6463980|dbj|BAA86957.1| |
score: 44.28 |
e-value: 0.001 |
Identity: 40% |
Span: 207bp (35.0%) |
Frame: 3 |
| gi|6463980|dbj|BAA86957.1| group 2 sigma factor RpoD3 [Synechococcus sp. PCC 7942] |
| Match: gi|1769596|gb|AAB39997.1| |
score: 43.9 |
e-value: 0.001 |
Identity: 35.29% |
Span: 204bp (34.5%) |
Frame: 3 |
| gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp.] |
| Match: gi|37523331|ref|NP_926708.1| |
score: 43.9 |
e-value: 0.001 |
Identity: 33.03% |
Span: 300bp (50.8%) |
Frame: 3 |
| gi|37523331|ref|NP_926708.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35214335|dbj|BAC91703.1| g... |
| Match: gi|23128093|ref|ZP_00109949.1| |
score: 43.13 |
e-value: 0.002 |
Identity: 32.94% |
Span: 246bp (41.6%) |
Frame: 3 |
| gi|23128093|ref|ZP_00109949.1| hypothetical protein [Nostoc punctiforme] gi|8118663|gb|AAF73062.1| primary vegetative... |
| Match: gi|23126581|ref|ZP_00108472.1| |
score: 43.13 |
e-value: 0.002 |
Identity: 28.12% |
Span: 288bp (48.7%) |
Frame: 3 |
| gi|23126581|ref|ZP_00108472.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|17232755|ref|NP_489303.1| |
score: 42.74 |
e-value: 0.003 |
Identity: 30.68% |
Span: 255bp (43.1%) |
Frame: 3 |
| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120] >gi75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD ... |
| Match: gi|19910026|dbj|BAB87264.1| |
score: 42.74 |
e-value: 0.003 |
Identity: 30.1% |
Span: 309bp (52.3%) |
Frame: 3 |
| gi|19910026|dbj|BAB87264.1| RNA polymerase sigma factor [Cyanophora paradoxa] |
| Match: gi|558881|gb|AAB41506.1| |
score: 42.74 |
e-value: 0.003 |
Identity: 36.36% |
Span: 198bp (33.5%) |
Frame: 3 |
| gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] |
| Match: gi|1588486|prf||2208419B |
score: 42.74 |
e-value: 0.003 |
Identity: 36.36% |
Span: 198bp (33.5%) |
Frame: 3 |
| RNA polymerase sigma factor |
| Match: gi|4218586|emb|CAA10725.1| |
score: 41.59 |
e-value: 0.007 |
Identity: 33.85% |
Span: 195bp (33.0%) |
Frame: 3 |
| gi|4218586|emb|CAA10725.1| chloroplast sigma factor [Triticum aestivum] |
| Match: gi|666106|emb|CAA35949.1| |
score: 40.82 |
e-value: 0.012 |
Identity: 26.72% |
Span: 342bp (57.9%) |
Frame: 3 |
| gi|666106|emb|CAA35949.1| regulatory protein SWI4 [Saccharomyces cerevisiae] |
| Match: gi|226576|prf||1602249A |
score: 40.82 |
e-value: 0.012 |
Identity: 26.72% |
Span: 342bp (57.9%) |
Frame: 3 |
| gi|226576|prf||1602249A SWI4 gene |
| Match: gi|1769588|gb|AAB95226.1| |
score: 40.43 |
e-value: 0.015 |
Identity: 37.88% |
Span: 198bp (33.5%) |
Frame: 3 |
| gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp.] |
| Match: gi|1769413|dbj|BAA13122.1| |
score: 40.43 |
e-value: 0.015 |
Identity: 38.18% |
Span: 162bp (27.4%) |
Frame: 3 |
| gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa] |
| Match: gi|19910024|dbj|BAB87263.1| |
score: 40.05 |
e-value: 0.02 |
Identity: 40% |
Span: 150bp (25.4%) |
Frame: 3 |
| gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa] |
| Match: gi|4336608|gb|AAD17855.1| |
score: 40.05 |
e-value: 0.02 |
Identity: 29.2% |
Span: 339bp (57.4%) |
Frame: 3 |
| gi|4336608|gb|AAD17855.1| sigma factor SIG2B; ZmSIG2B [Zea mays] |
| Match: gi|16332132|ref|NP_442860.1| |
score: 40.05 |
e-value: 0.02 |
Identity: 30.95% |
Span: 246bp (41.6%) |
Frame: 3 |
| gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434770|pir||S76760 transcri... |
| Match: gi|17231302|ref|NP_487850.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.38% |
Span: 195bp (33.0%) |
Frame: 3 |
| gi|17231302|ref|NP_487850.1| group 2 sigma 70-type sigma factor D [Nostoc sp. PCC 7120] gi|25288482|pir||AC2282 group... |
| Match: gi|6320957|ref|NP_011036.1| |
score: 38.89 |
e-value: 0.045 |
Identity: 25.86% |
Span: 342bp (57.9%) |
Frame: 3 |
| gi|6320957|ref|NP_011036.1| Involved in cell cycle dependent gene expression; Swi4p [Saccharomyces cerevisiae] gi|730... |
| Match: gi|7484279|pir||T14364 |
score: 38.89 |
e-value: 0.045 |
Identity: 25.2% |
Span: 327bp (55.3%) |
Frame: 3 |
| gi|7484279|pir||T14364 probable transcription initiation factor sigma A, chloroplast - red alga (Cyanidium caldarium)... |
| Match: gi|3893860|gb|AAC78467.1| |
score: 38.51 |
e-value: 0.058 |
Identity: 27.42% |
Span: 369bp (62.4%) |
Frame: 3 |
| gi|3893860|gb|AAC78467.1| RNA polymerase sigma factor 1 [Zea mays] |
| Match: gi|23128585|ref|ZP_00110428.1| |
score: 38.51 |
e-value: 0.058 |
Identity: 33.82% |
Span: 204bp (34.5%) |
Frame: 3 |
| gi|23128585|ref|ZP_00110428.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|3769432|gb|AAC78468.1| |
score: 38.51 |
e-value: 0.058 |
Identity: 32.31% |
Span: 195bp (33.0%) |
Frame: 3 |
| gi|3769432|gb|AAC78468.1| RNA polymerase sigma factor 2 [Zea mays] |
| Match: gi|22297808|ref|NP_681055.1| |
score: 37.74 |
e-value: 0.1 |
Identity: 32.84% |
Span: 201bp (34.0%) |
Frame: 3 |
| gi|22297808|ref|NP_681055.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22293985|dbj|... |
| Match: gi|37806471|dbj|BAC99906.1| |
score: 37.74 |
e-value: 0.1 |
Identity: 32.31% |
Span: 195bp (33.0%) |
Frame: 3 |
| gi|37806471|dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa (japonica cultivar-group)] |
| Match: gi|2780746|dbj|BAA24364.1| |
score: 37.74 |
e-value: 0.1 |
Identity: 32.31% |
Span: 195bp (33.0%) |
Frame: 3 |
| gi|2780746|dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa (japonica cultivar-group)] |
| Match: gi|34905322|ref|NP_914008.1| |
score: 37.74 |
e-value: 0.1 |
Identity: 32.31% |
Span: 195bp (33.0%) |
Frame: 3 |
| gi|34905322|ref|NP_914008.1| plastid RNA polymerase sigma factor [Oryza sativa (japonica cultivar-group)] |
| Match: gi|37806470|dbj|BAC99905.1| |
score: 37.74 |
e-value: 0.1 |
Identity: 32.31% |
Span: 195bp (33.0%) |
Frame: 3 |
| gi|37806470|dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa (japonica cultivar-group)] |
|
| arabidopsis/peptide [blastx] | Showing best 2 hits recorded |
| Match: At2g36990.1 |
score: 98.21 |
e-value: 2.5e-21 |
Identity: 41.84% |
Span: 423bp (71.6%) |
Frame: 3 |
| At2g36990.1 68409.m04106 RNA polymerase sigma-70 factor -related |
| Match: At1g08540.1 |
score: 68.94 |
e-value: 1.6e-12 |
Identity: 32.54% |
Span: 375bp (63.5%) |
Frame: 3 |
| At1g08540.1 68408.m00853 plastid RNA polymerase sigma-subunit -related similar to GB:BAA22427 and EST gb N65838 |
|
