| genbank/nr [blastx] | Showing best 94 hits recorded |
| Match: gi|15234669|ref|NP_194751.1| |
score: 135.6 |
e-value: 3.5e-31 |
Identity: 80.52% |
Span: 231bp (42.9%) |
Frame: 3 |
| RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) [Arabidopsis thaliana] >gi10720264|sp|Q9SUM2.1|RUXF_ARATH RecName: Full=Prob... |
| Match: gi|4507131|ref|NP_003086.1| |
score: 131.7 |
e-value: 5.1e-30 |
Identity: 79.73% |
Span: 222bp (41.2%) |
Frame: 3 |
| gi|4507131|ref|NP_003086.1| small nuclear ribonucleoprotein polypeptide F [Homo sapiens] gi|6094209|sp|Q15356|RUXF_HU... |
| Match: gi|34864945|ref|XP_345815.1| |
score: 131.7 |
e-value: 5.1e-30 |
Identity: 79.73% |
Span: 222bp (41.2%) |
Frame: 3 |
| gi|34864945|ref|XP_345815.1| similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Ratt... |
| Match: gi|33876795|gb|AAH02505.2| |
score: 131.7 |
e-value: 5.1e-30 |
Identity: 79.73% |
Span: 222bp (41.2%) |
Frame: 3 |
| gi|33876795|gb|AAH02505.2| SNRPF protein [Homo sapiens] |
| Match: gi|38079111|ref|XP_357414.1| |
score: 129.8 |
e-value: 1.9e-29 |
Identity: 78.38% |
Span: 222bp (41.2%) |
Frame: 3 |
| gi|38079111|ref|XP_357414.1| similar to SNRPF protein [Mus musculus] |
| Match: gi|31212897|ref|XP_312266.1| |
score: 127.1 |
e-value: 1.2e-28 |
Identity: 75.34% |
Span: 219bp (40.6%) |
Frame: 3 |
| gi|31212897|ref|XP_312266.1| ENSANGP00000002801 [Anopheles gambiae] gi|30177439|gb|EAA07677.2| ENSANGP00000002801 [An... |
| Match: gi|495021|gb|AAA28445.1| |
score: 122.1 |
e-value: 4e-27 |
Identity: 72% |
Span: 225bp (41.7%) |
Frame: 3 |
| gi|495021|gb|AAA28445.1| membrane-associated protein |
| Match: gi|22024001|ref|NP_523708.2| |
score: 122.1 |
e-value: 4e-27 |
Identity: 72% |
Span: 225bp (41.7%) |
Frame: 3 |
| gi|22024001|ref|NP_523708.2| Developmental embryonic B CG16792-PA [Drosophila melanogaster] gi|29337191|sp|Q24297|RUX... |
| Match: gi|17557029|ref|NP_498708.1| |
score: 120.9 |
e-value: 8.9e-27 |
Identity: 77.33% |
Span: 225bp (41.7%) |
Frame: 3 |
| gi|17557029|ref|NP_498708.1| small nuclear ribonucleoprotein, small nuclear ribonucleoprotein SNR-5 (9.2 kD) (snr-5) ... |
| Match: gi|19112893|ref|NP_596101.1| |
score: 115.9 |
e-value: 2.9e-25 |
Identity: 75.34% |
Span: 219bp (40.6%) |
Frame: 3 |
| gi|19112893|ref|NP_596101.1| small nuclear ribonucleoprotein F [Schizosaccharomyces pombe] gi|6094210|sp|O59734|RUXF_... |
| Match: gi|27704896|ref|XP_230870.1| |
score: 111.7 |
e-value: 5.4e-24 |
Identity: 70.42% |
Span: 213bp (39.5%) |
Frame: 3 |
| gi|27704896|ref|XP_230870.1| similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Ratt... |
| Match: gi|38076106|ref|XP_356732.1| |
score: 105.1 |
e-value: 5.1e-22 |
Identity: 67.57% |
Span: 222bp (41.2%) |
Frame: 3 |
| gi|38076106|ref|XP_356732.1| similar to SNRPF protein [Mus musculus] |
| Match: gi|38103439|gb|EAA50136.1| |
score: 97.06 |
e-value: 1.4e-19 |
Identity: 61.33% |
Span: 222bp (41.2%) |
Frame: 3 |
| gi|38103439|gb|EAA50136.1| hypothetical protein MG03895.4 [Magnaporthe grisea 70-15] |
| Match: gi|27574143|pdb|1N9R|A |
score: 93.59 |
e-value: 1.5e-18 |
Identity: 63.64% |
Span: 228bp (42.3%) |
Frame: 3 |
| gi|27574143|pdb|1N9R|A Chain A, Crystal Structure Of A Heptameric Ring Complex Of Yeast Smf In Spacegroup P4122 gi|27... |
| Match: gi|6325440|ref|NP_015508.1| |
score: 93.59 |
e-value: 1.5e-18 |
Identity: 63.64% |
Span: 228bp (42.3%) |
Frame: 3 |
| gi|6325440|ref|NP_015508.1| Sm or Sm-like snRNP protein; Smx3p [Saccharomyces cerevisiae] gi|1711405|sp|P54999|RUXF_Y... |
| Match: gi|32415147|ref|XP_328053.1| |
score: 90.12 |
e-value: 1.7e-17 |
Identity: 54.67% |
Span: 222bp (41.2%) |
Frame: 3 |
| gi|32415147|ref|XP_328053.1| hypothetical protein ( related to snRNP protein SMX3 [imported] - Neurospora crassa ) gi... |
| Match: gi|27574150|pdb|1N9S|A |
score: 89.74 |
e-value: 2.2e-17 |
Identity: 62.34% |
Span: 228bp (42.3%) |
Frame: 3 |
| gi|27574150|pdb|1N9S|A Chain A, Crystal Structure Of Yeast Smf In Spacegroup P43212 gi|27574151|pdb|1N9S|B Chain B, C... |
| Match: gi|23508471|ref|NP_701140.1| |
score: 85.89 |
e-value: 3.2e-16 |
Identity: 61.29% |
Span: 186bp (34.5%) |
Frame: 3 |
| gi|23508471|ref|NP_701140.1| small nuclear ribonucleoprotein F, putative [Plasmodium falciparum 3D7] gi|23496205|gb|A... |
| Match: gi|17510579|ref|NP_490883.1| |
score: 68.94 |
e-value: 4e-11 |
Identity: 46.27% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|17510579|ref|NP_490883.1| u6 snRNA-associated Sm-like protein (lsm-5) [Caenorhabditis elegans] gi|14916400|gb|AAK7... |
| Match: gi|13812032|ref|NP_113163.1| |
score: 67.78 |
e-value: 9e-11 |
Identity: 47.06% |
Span: 204bp (37.8%) |
Frame: 3 |
| gi|13812032|ref|NP_113163.1| small nuclear ribonucleoprotein F [Guillardia theta] gi|25329696|pir||C90130 small nucle... |
| Match: gi|15224366|ref|NP_181909.1| |
score: 66.24 |
e-value: 2.6e-10 |
Identity: 42.42% |
Span: 198bp (36.7%) |
Frame: 3 |
| small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative ... |
| Match: gi|19115292|ref|NP_594380.1| |
score: 66.24 |
e-value: 2.6e-10 |
Identity: 44.78% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|19115292|ref|NP_594380.1| small nuclear ribonucleoprotein, F-like [Schizosaccharomyces pombe] gi|10720076|sp|Q9UUI... |
| Match: gi|11602707|emb|CAC18540.1| |
score: 65.85 |
e-value: 3.4e-10 |
Identity: 43.94% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|11602707|emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococcus multilocularis] |
| Match: gi|5901998|ref|NP_009011.1| |
score: 65.85 |
e-value: 3.4e-10 |
Identity: 43.94% |
Span: 198bp (36.7%) |
Frame: 3 |
| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens] >gi113865835|ref|NP_084421.1| U6 snRNA-associated Sm-like pro... |
| Match: gi|9837170|gb|AAG00459.1| |
score: 65.47 |
e-value: 4.5e-10 |
Identity: 52.86% |
Span: 210bp (39.0%) |
Frame: 3 |
| gi|9837170|gb|AAG00459.1| Sm-F [Trypanosoma brucei] |
| Match: gi|21554327|gb|AAM63434.1| |
score: 65.08 |
e-value: 5.8e-10 |
Identity: 42.03% |
Span: 207bp (38.4%) |
Frame: 3 |
| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] |
| Match: gi|15232179|ref|NP_191540.1| |
score: 65.08 |
e-value: 5.8e-10 |
Identity: 42.03% |
Span: 207bp (38.4%) |
Frame: 3 |
| small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative ... |
| Match: gi|31212689|ref|XP_315329.1| |
score: 64.31 |
e-value: 9.9e-10 |
Identity: 44.44% |
Span: 189bp (35.1%) |
Frame: 3 |
| gi|31212689|ref|XP_315329.1| ENSANGP00000021121 [Anopheles gambiae] gi|21299149|gb|EAA11294.1| ENSANGP00000021121 [An... |
| Match: gi|24656550|ref|NP_611528.1| |
score: 62.77 |
e-value: 2.9e-09 |
Identity: 44.44% |
Span: 189bp (35.1%) |
Frame: 3 |
| gi|24656550|ref|NP_611528.1| CG9344-PA [Drosophila melanogaster] gi|7291213|gb|AAF46645.1| CG9344-PA [Drosophila mela... |
| Match: gi|20861373|ref|XP_134104.1| |
score: 62.77 |
e-value: 2.9e-09 |
Identity: 43.94% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|20861373|ref|XP_134104.1| RIKEN cDNA 2410088K19 [Mus musculus] |
| Match: gi|23619200|ref|NP_705162.1| |
score: 60.46 |
e-value: 1.4e-08 |
Identity: 40% |
Span: 210bp (39.0%) |
Frame: 3 |
| gi|23619200|ref|NP_705162.1| u6 snRNA-associated sm-like protein, putative [Plasmodium falciparum 3D7] gi|23615407|em... |
| Match: gi|19074156|ref|NP_584762.1| |
score: 60.08 |
e-value: 1.9e-08 |
Identity: 45.31% |
Span: 192bp (35.6%) |
Frame: 3 |
| gi|19074156|ref|NP_584762.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi] gi|19068798|emb|CAD25266.1|... |
| Match: gi|34851678|ref|XP_344755.1| |
score: 59.69 |
e-value: 2.4e-08 |
Identity: 42.19% |
Span: 192bp (35.6%) |
Frame: 3 |
| gi|34851678|ref|XP_344755.1| similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) [Rattus norvegicus] |
| Match: gi|34879731|ref|XP_344138.1| |
score: 59.69 |
e-value: 2.4e-08 |
Identity: 42.19% |
Span: 192bp (35.6%) |
Frame: 3 |
| gi|34879731|ref|XP_344138.1| similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) [Rattus norvegicus] |
| Match: gi|23483747|gb|EAA19315.1| |
score: 57.77 |
e-value: 9.3e-08 |
Identity: 40% |
Span: 210bp (39.0%) |
Frame: 3 |
| gi|23483747|gb|EAA19315.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium yoelii yoelii] |
| Match: gi|29726409|pdb|1LOJ|A |
score: 57 |
e-value: 1.6e-07 |
Identity: 43.94% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal Protein (Smap1) Bound To Uri... |
| Match: gi|15678676|ref|NP_275791.1| |
score: 57 |
e-value: 1.6e-07 |
Identity: 43.94% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|15678676|ref|NP_275791.1| conserved protein [Methanothermobacter thermautotrophicus] gi|6094215|sp|O26745|RUXX_MET... |
| Match: gi|20150503|pdb|1JRI|A |
score: 57 |
e-value: 1.6e-07 |
Identity: 43.94% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein With Two Heptamers In The Asymme... |
| Match: gi|29726339|pdb|1JBM|A |
score: 57 |
e-value: 1.6e-07 |
Identity: 43.94% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like Archaeal Protein From Methanobacte... |
| Match: gi|13786869|pdb|1I81|A |
score: 57 |
e-value: 1.6e-07 |
Identity: 43.94% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From Methanobacterium Thermoautotrophic... |
| Match: gi|38108971|gb|EAA54910.1| |
score: 56.22 |
e-value: 2.7e-07 |
Identity: 46.03% |
Span: 189bp (35.1%) |
Frame: 3 |
| gi|38108971|gb|EAA54910.1| hypothetical protein MG05701.4 [Magnaporthe grisea 70-15] |
| Match: gi|23049213|ref|ZP_00076446.1| |
score: 55.45 |
e-value: 4.6e-07 |
Identity: 42.42% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|23049213|ref|ZP_00076446.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Methanosarcina barkeri] |
| Match: gi|20092011|ref|NP_618086.1| |
score: 54.68 |
e-value: 7.9e-07 |
Identity: 42.42% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|20092011|ref|NP_618086.1| Sm protein [Methanosarcina acetivorans str. C2A] gi|30173335|sp|Q8TL47|RUXX_METAC Putati... |
| Match: gi|21226441|ref|NP_632363.1| |
score: 53.14 |
e-value: 2.3e-06 |
Identity: 40.91% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|21226441|ref|NP_632363.1| putative snRNP Sm-like protein [Methanosarcina mazei Goe1] gi|30173324|sp|Q8PZZ9|RUXX_ME... |
| Match: gi|11498481|ref|NP_069709.1| |
score: 51.99 |
e-value: 5.1e-06 |
Identity: 36.49% |
Span: 222bp (41.2%) |
Frame: 3 |
| gi|11498481|ref|NP_069709.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304] gi|6094214|sp|O29386|RUXX_ARCFU Putati... |
| Match: gi|23489339|gb|EAA21550.1| |
score: 51.99 |
e-value: 5.1e-06 |
Identity: 63.64% |
Span: 99bp (18.4%) |
Frame: 3 |
| gi|23489339|gb|EAA21550.1| hypothetical protein [Plasmodium yoelii yoelii] |
| Match: gi|16082245|ref|NP_394696.1| |
score: 50.83 |
e-value: 1.1e-05 |
Identity: 34.67% |
Span: 219bp (40.6%) |
Frame: 3 |
| gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein related protein [Thermoplasma acidophilum] gi|11387090|s... |
| Match: gi|13541187|ref|NP_110875.1| |
score: 50.06 |
e-value: 1.9e-05 |
Identity: 36% |
Span: 219bp (40.6%) |
Frame: 3 |
| gi|13541187|ref|NP_110875.1| Small nuclear ribonucleoprotein (snRNP) homolog [Thermoplasma volcanium] gi|20178114|sp|... |
| Match: gi|14324575|dbj|BAB59502.1| |
score: 50.06 |
e-value: 1.9e-05 |
Identity: 36% |
Span: 219bp (40.6%) |
Frame: 3 |
| gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium] |
| Match: gi|19113071|ref|NP_596279.1| |
score: 48.91 |
e-value: 4.3e-05 |
Identity: 41.18% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|19113071|ref|NP_596279.1| putative small ribonuclear protein-sm like [Schizosaccharomyces pombe] gi|12230213|sp|O1... |
| Match: gi|28829666|gb|AAO52182.1| |
score: 48.14 |
e-value: 7.4e-05 |
Identity: 39.34% |
Span: 183bp (34.0%) |
Frame: 3 |
| gi|28829666|gb|AAO52182.1| similar to Homo sapiens (Human). Sm protein F [Dictyostelium discoideum] |
| Match: gi|18977914|ref|NP_579271.1| |
score: 48.14 |
e-value: 7.4e-05 |
Identity: 40.62% |
Span: 192bp (35.6%) |
Frame: 3 |
| gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus DSM 3638] gi|23822154|sp|... |
| Match: gi|15920417|ref|NP_376086.1| |
score: 46.59 |
e-value: 0.00021 |
Identity: 40.58% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|15920417|ref|NP_376086.1| 90aa long hypothetical small nuclear ribonucleoprotein [Sulfolobus tokodaii] gi|15621199... |
| Match: gi|23489340|gb|EAA21551.1| |
score: 46.59 |
e-value: 0.00021 |
Identity: 58.82% |
Span: 102bp (18.9%) |
Frame: 3 |
| gi|23489340|gb|EAA21551.1| hypothetical protein [Plasmodium yoelii yoelii] |
| Match: gi|15897658|ref|NP_342263.1| |
score: 46.59 |
e-value: 0.00021 |
Identity: 45.16% |
Span: 186bp (34.5%) |
Frame: 3 |
| gi|15897658|ref|NP_342263.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus solfataricus] gi|25329698|pir||F... |
| Match: gi|14277786|pdb|1I8F|A |
score: 46.21 |
e-value: 0.00028 |
Identity: 40.91% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm Protein: Implications For The Eukar... |
| Match: gi|15897150|ref|NP_341755.1| |
score: 46.21 |
e-value: 0.00028 |
Identity: 39.13% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|15897150|ref|NP_341755.1| Small nuclear riboprotein protein (snRNP-1) [Sulfolobus solfataricus] gi|25394288|pir||B... |
| Match: gi|18312179|ref|NP_558846.1| |
score: 46.21 |
e-value: 0.00028 |
Identity: 40.91% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum aerophilum] gi|18159615|g... |
| Match: gi|6320586|ref|NP_010666.1| |
score: 45.05 |
e-value: 0.00062 |
Identity: 38.46% |
Span: 195bp (36.2%) |
Frame: 3 |
| gi|6320586|ref|NP_010666.1| Like Sm-F protein; Lsm6p [Saccharomyces cerevisiae] gi|12230254|sp|Q06406|LSM6_YEAST U6 s... |
| Match: gi|22406344|ref|ZP_00001194.1| |
score: 45.05 |
e-value: 0.00062 |
Identity: 35.29% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|22406344|ref|ZP_00001194.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Ferroplasma acidarmanus] |
| Match: gi|21730739|pdb|1LJO|A |
score: 44.67 |
e-value: 0.00081 |
Identity: 40.85% |
Span: 207bp (38.4%) |
Frame: 3 |
| gi|21730739|pdb|1LJO|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm2) From Archaeoglobus Fulgidus At 1.95a... |
| Match: gi|21228485|ref|NP_634407.1| |
score: 44.67 |
e-value: 0.00081 |
Identity: 34.29% |
Span: 207bp (38.4%) |
Frame: 3 |
| gi|21228485|ref|NP_634407.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Goe1] gi|20906968|gb|AAM320... |
| Match: gi|11497974|ref|NP_069198.1| |
score: 44.67 |
e-value: 0.00081 |
Identity: 40.85% |
Span: 207bp (38.4%) |
Frame: 3 |
| gi|11497974|ref|NP_069198.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304] gi|7451056|pir||B69295 snRNP homolog -... |
| Match: gi|20090273|ref|NP_616348.1| |
score: 43.9 |
e-value: 0.001 |
Identity: 34.29% |
Span: 207bp (38.4%) |
Frame: 3 |
| gi|20090273|ref|NP_616348.1| Sm protein [Methanosarcina acetivorans str. C2A] gi|19915270|gb|AAM04828.1| Sm protein [... |
| Match: gi|15920992|ref|NP_376661.1| |
score: 42.74 |
e-value: 0.003 |
Identity: 43.64% |
Span: 165bp (30.6%) |
Frame: 3 |
| gi|15920992|ref|NP_376661.1| 79aa long hypothetical small nuclear ribonucleoprotein [Sulfolobus tokodaii] gi|15621776... |
| Match: gi|23508277|ref|NP_700946.1| |
score: 42.74 |
e-value: 0.003 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|23508277|ref|NP_700946.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated Sm-like protein LsM4, putati... |
| Match: gi|12230291|sp|Q9LGE6|LSM4_ORYSA |
score: 42.36 |
e-value: 0.004 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|12230291|sp|Q9LGE6|LSM4_ORYSA Probable U6 snRNA-associated Sm-like protein LSm4 gi|9711887|dbj|BAB07978.1| putativ... |
| Match: gi|34902916|ref|NP_912805.1| |
score: 42.36 |
e-value: 0.004 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|34902916|ref|NP_912805.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] gi|6016876|dbj|BAA85219... |
| Match: gi|15241028|ref|NP_198124.1| |
score: 41.97 |
e-value: 0.005 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| emb1644 (embryo defective 1644) [Arabidopsis thaliana] |
| Match: gi|21593495|gb|AAM65462.1| |
score: 41.97 |
e-value: 0.005 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| glycine rich protein-like [Arabidopsis thaliana] |
| Match: gi|12230258|sp|Q43582|LSM4_TOBAC |
score: 41.59 |
e-value: 0.007 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|12230258|sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich protein 10) (GRP 10)... |
| Match: gi|14602195|ref|NP_147628.1| |
score: 41.59 |
e-value: 0.007 |
Identity: 37.14% |
Span: 204bp (37.8%) |
Frame: 3 |
| gi|14602195|ref|NP_147628.1| homolog of small nuclear ribonucleoprotein (snRNP) [Aeropyrum pernix] |
| Match: gi|12230329|sp|Q9ZRU9|LSM4_FAGSY |
score: 41.2 |
e-value: 0.009 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|12230329|sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich protein 2) gi|392791... |
| Match: gi|23485036|gb|EAA20166.1| |
score: 41.2 |
e-value: 0.009 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii] |
| Match: gi|32415822|ref|XP_328389.1| |
score: 41.2 |
e-value: 0.009 |
Identity: 33.82% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|32415822|ref|XP_328389.1| hypothetical protein [Neurospora crassa] gi|28923928|gb|EAA33089.1| hypothetical protein... |
| Match: gi|24583408|ref|NP_723584.1| |
score: 40.43 |
e-value: 0.015 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|24583408|ref|NP_723584.1| CG31990-PA [Drosophila melanogaster] gi|22946154|gb|AAF52938.2| CG31990-PA [Drosophila m... |
| Match: gi|38047763|gb|AAR09784.1| |
score: 40.43 |
e-value: 0.015 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|38047763|gb|AAR09784.1| similar to Drosophila melanogaster CG17768 [Drosophila yakuba] |
| Match: gi|20260282|gb|AAM13039.1| |
score: 40.43 |
e-value: 0.015 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| unknown protein [Arabidopsis thaliana] >gi22136528|gb|AAM91342.1| unknown protein [Arabidopsis thaliana] |
| Match: gi|25012547|gb|AAN71375.1| |
score: 40.43 |
e-value: 0.015 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|25012547|gb|AAN71375.1| RE35747p [Drosophila melanogaster] |
| Match: gi|14600779|ref|NP_147300.1| |
score: 40.43 |
e-value: 0.015 |
Identity: 41.82% |
Span: 165bp (30.6%) |
Frame: 3 |
| gi|14600779|ref|NP_147300.1| small nuclear ribonucleoprotein [Aeropyrum pernix] gi|10720267|sp|Q9YEQ5|RUXX_AERPE Puta... |
| Match: gi|17533617|ref|NP_495514.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.21% |
Span: 207bp (38.4%) |
Frame: 3 |
| gi|17533617|ref|NP_495514.1| u6 snRNA-associated Sm-like protein (lsm-2) [Caenorhabditis elegans] gi|12230257|sp|Q199... |
| Match: gi|13161882|emb|CAC33027.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|13161882|emb|CAC33027.1| Lsm4 protein [Takifugu rubripes] |
| Match: gi|7657317|ref|NP_056631.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|7657317|ref|NP_056631.1| LSM4 homolog, U6 small nuclear RNA associated; U6 snRNA-associated SM-like protein 4 [Mus... |
| Match: gi|23050735|ref|ZP_00077593.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 41.86% |
Span: 129bp (23.9%) |
Frame: 3 |
| gi|23050735|ref|ZP_00077593.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Methanosarcina barkeri] |
| Match: gi|37589787|gb|AAH59435.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|37589787|gb|AAH59435.1| Unknown (protein for MGC:73057) [Danio rerio] gi|38328316|gb|AAH62285.1| Unknown (protein ... |
| Match: gi|27668769|ref|XP_214318.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|27668769|ref|XP_214318.1| similar to U6 snRNA-associated Sm-like protein LSm4 [Rattus norvegicus] gi|12846677|dbj|... |
| Match: gi|12834762|dbj|BAB23033.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|12834762|dbj|BAB23033.1| unnamed protein product [Mus musculus] |
| Match: gi|6912486|ref|NP_036453.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|6912486|ref|NP_036453.1| U6 snRNA-associated Sm-like protein 4; U6 snRNA-associated Sm-like protein [Homo sapiens]... |
| Match: gi|31232706|ref|XP_318746.1| |
score: 39.28 |
e-value: 0.034 |
Identity: 35.29% |
Span: 201bp (37.3%) |
Frame: 3 |
| gi|31232706|ref|XP_318746.1| ENSANGP00000016613 [Anopheles gambiae] gi|30174533|gb|EAA14138.2| ENSANGP00000016613 [An... |
| Match: gi|38110088|gb|EAA55858.1| |
score: 38.89 |
e-value: 0.045 |
Identity: 41.07% |
Span: 165bp (30.6%) |
Frame: 3 |
| gi|38110088|gb|EAA55858.1| hypothetical protein MG01509.4 [Magnaporthe grisea 70-15] |
| Match: gi|18313113|ref|NP_559780.1| |
score: 38.51 |
e-value: 0.058 |
Identity: 54.05% |
Span: 111bp (20.6%) |
Frame: 3 |
| gi|18313113|ref|NP_559780.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum aerophilum] gi|18160622|g... |
| Match: gi|29726438|pdb|1M5Q|A |
score: 38.51 |
e-value: 0.058 |
Identity: 54.05% |
Span: 111bp (20.6%) |
Frame: 3 |
| gi|29726438|pdb|1M5Q|A Chain A, Crystal Structure Of A Novel Sm-Like Archaeal Protein From Pyrobaculum Aerophilum gi|... |
| Match: gi|22406318|ref|ZP_00001168.1| |
score: 38.51 |
e-value: 0.058 |
Identity: 36.62% |
Span: 213bp (39.5%) |
Frame: 3 |
| gi|22406318|ref|ZP_00001168.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Ferroplasma acidarmanus] |
| Match: gi|16944624|emb|CAD11394.1| |
score: 37.74 |
e-value: 0.1 |
Identity: 30.3% |
Span: 198bp (36.7%) |
Frame: 3 |
| gi|16944624|emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Neurospora crassa] |
|
| arabidopsis/peptide [blastx] | Showing best 5 hits recorded |
| Match: At4g30220.1 |
score: 135.6 |
e-value: 1.4e-32 |
Identity: 80.52% |
Span: 231bp (42.9%) |
Frame: 3 |
| At4g30220.1 68411.m03923 snRNP Sm protein F - like Sm protein F, Homo sapiens, PIR:S55053 |
| Match: At2g43810.1 |
score: 66.24 |
e-value: 1e-11 |
Identity: 42.42% |
Span: 198bp (36.7%) |
Frame: 3 |
| At2g43810.1 68409.m04923 small nuclear ribonucleo protein polypeptide F -related |
| Match: At3g59810.1 |
score: 65.08 |
e-value: 2.3e-11 |
Identity: 42.03% |
Span: 207bp (38.4%) |
Frame: 3 |
| At3g59810.1 68410.m06169 U6 snRNA-associated Sm-related protein U6 snRNA-associated Sm-like protein LSm6 - Homo sapie... |
| Match: At5g27720.1 |
score: 41.97 |
e-value: 0.00021 |
Identity: 36.76% |
Span: 201bp (37.3%) |
Frame: 3 |
| At5g27720.1 68412.m03030 glycine rich protein - like glycine rich protein, Nicotiana tabacum, PIR:S54169 |
| Match: At1g03330.1 |
score: 33.88 |
e-value: 0.057 |
Identity: 43.24% |
Span: 111bp (20.6%) |
Frame: 3 |
| At1g03330.1 68408.m00279 expressed protein Similar to gb|U85207 snRNP core Sm protein homolog Sm-X5 from Mus musculus... |
|
