| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|34864945|ref|XP_345815.1| |
score: 107.8 |
e-value: 3.5e-25 |
Identity: 83.05% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|34864945|ref|XP_345815.1| similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Ratt... |
| Match: gi|4507131|ref|NP_003086.1| |
score: 107.8 |
e-value: 3.5e-25 |
Identity: 83.05% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|4507131|ref|NP_003086.1| small nuclear ribonucleoprotein polypeptide F [Homo sapiens] gi|6094209|sp|Q15356|RUXF_HU... |
| Match: gi|41946811|gb|AAH66015.1| |
score: 107.8 |
e-value: 3.5e-25 |
Identity: 83.05% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|41946811|gb|AAH66015.1| Unknown (protein for IMAGE:5715059) [Mus musculus] |
| Match: gi|33876795|gb|AAH02505.2| |
score: 107.8 |
e-value: 1.5e-25 |
Identity: 83.05% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|33876795|gb|AAH02505.2| SNRPF protein [Homo sapiens] |
| Match: gi|39645845|gb|AAH63397.1| |
score: 107.8 |
e-value: 1.6e-25 |
Identity: 83.05% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|39645845|gb|AAH63397.1| Unknown (protein for IMAGE:5176590) [Homo sapiens] |
| Match: gi|38079111|ref|XP_357414.1| |
score: 107.8 |
e-value: 1.2e-24 |
Identity: 83.05% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|38079111|ref|XP_357414.1| similar to SNRPF protein [Mus musculus] |
| Match: gi|15234669|ref|NP_194751.1| |
score: 105.5 |
e-value: 3e-27 |
Identity: 80% |
Span: 180bp (36.8%) |
Frame: 1 |
| RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) [Arabidopsis thaliana] >gi10720264|sp|Q9SUM2.1|RUXF_ARATH RecName: Full=Prob... |
| Match: gi|31212897|ref|XP_312266.1| |
score: 104.4 |
e-value: 2.9e-24 |
Identity: 74.58% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|31212897|ref|XP_312266.1| ENSANGP00000002801 [Anopheles gambiae] gi|30177439|gb|EAA07677.2| ENSANGP00000002801 [An... |
| Match: gi|495021|gb|AAA28445.1| |
score: 97.83 |
e-value: 1.5e-22 |
Identity: 71.19% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|495021|gb|AAA28445.1| membrane-associated protein |
| Match: gi|42415804|gb|AAS15770.1| |
score: 97.83 |
e-value: 2.5e-22 |
Identity: 71.19% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|42415804|gb|AAS15770.1| DebB [Drosophila simulans] |
| Match: gi|22024001|ref|NP_523708.2| |
score: 97.83 |
e-value: 1.5e-22 |
Identity: 71.19% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|22024001|ref|NP_523708.2| Developmental embryonic B CG16792-PA [Drosophila melanogaster] gi|29337191|sp|Q24297|RUX... |
| Match: gi|17557029|ref|NP_498708.1| |
score: 97.83 |
e-value: 1.1e-22 |
Identity: 80.7% |
Span: 171bp (35.0%) |
Frame: 1 |
| gi|17557029|ref|NP_498708.1| small nuclear ribonucleoprotein, small nuclear ribonucleoprotein SNR-5 (9.2 kD) (snr-5) ... |
| Match: gi|39589637|emb|CAE66872.1| |
score: 97.44 |
e-value: 1.5e-22 |
Identity: 80.36% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|39589637|emb|CAE66872.1| Hypothetical protein CBG12250 [Caenorhabditis briggsae] |
| Match: gi|27704896|ref|XP_230870.1| |
score: 91.28 |
e-value: 3.1e-19 |
Identity: 69.49% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|27704896|ref|XP_230870.1| similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Ratt... |
| Match: gi|19112893|ref|NP_596101.1| |
score: 90.12 |
e-value: 1.4e-19 |
Identity: 73.21% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|19112893|ref|NP_596101.1| small nuclear ribonucleoprotein F [Schizosaccharomyces pombe] gi|6094210|sp|O59734|RUXF_... |
| Match: gi|38076106|ref|XP_356732.1| |
score: 89.35 |
e-value: 6.9e-18 |
Identity: 71.19% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|38076106|ref|XP_356732.1| similar to SNRPF protein [Mus musculus] |
| Match: gi|38103439|gb|EAA50136.1| |
score: 81.26 |
e-value: 6.4e-15 |
Identity: 63.33% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|38103439|gb|EAA50136.1| hypothetical protein MG03895.4 [Magnaporthe grisea 70-15] |
| Match: gi|42546114|gb|EAA68957.1| |
score: 78.95 |
e-value: 3.2e-14 |
Identity: 60% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|42546114|gb|EAA68957.1| hypothetical protein FG01381.1 [Gibberella zeae PH-1] |
| Match: gi|40742996|gb|EAA62186.1| |
score: 74.33 |
e-value: 7.8e-13 |
Identity: 61.82% |
Span: 162bp (33.1%) |
Frame: 1 |
| gi|40742996|gb|EAA62186.1| hypothetical protein AN7606.2 [Aspergillus nidulans FGSC A4] |
| Match: gi|6325440|ref|NP_015508.1| |
score: 73.94 |
e-value: 5.8e-13 |
Identity: 64.41% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|6325440|ref|NP_015508.1| Sm or Sm-like snRNP protein; Smx3p [Saccharomyces cerevisiae] gi|1711405|sp|P54999|RUXF_Y... |
| Match: gi|27574143|pdb|1N9R|A |
score: 73.94 |
e-value: 5.8e-13 |
Identity: 64.41% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|27574143|pdb|1N9R|A Chain A, Crystal Structure Of A Heptameric Ring Complex Of Yeast Smf In Spacegroup P4122 gi|27... |
| Match: gi|32415147|ref|XP_328053.1| |
score: 73.56 |
e-value: 1.3e-12 |
Identity: 46.99% |
Span: 246bp (50.3%) |
Frame: 1 |
| gi|32415147|ref|XP_328053.1| hypothetical protein ( related to snRNP protein SMX3 [imported] - Neurospora crassa ) gi... |
| Match: gi|27574150|pdb|1N9S|A |
score: 70.09 |
e-value: 7.9e-12 |
Identity: 62.71% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|27574150|pdb|1N9S|A Chain A, Crystal Structure Of Yeast Smf In Spacegroup P43212 gi|27574151|pdb|1N9S|B Chain B, C... |
| Match: gi|23508471|ref|NP_701140.1| |
score: 68.17 |
e-value: 2.1e-12 |
Identity: 63.83% |
Span: 141bp (28.8%) |
Frame: 1 |
| gi|23508471|ref|NP_701140.1| small nuclear ribonucleoprotein F, putative [Plasmodium falciparum 3D7] gi|23496205|gb|A... |
| Match: gi|11602707|emb|CAC18540.1| |
score: 62.39 |
e-value: 3.1e-09 |
Identity: 48.21% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|11602707|emb|CAC18540.1| putative U6-snRNA-associated protein [Echinococcus multilocularis] |
| Match: gi|5901998|ref|NP_009011.1| |
score: 62 |
e-value: 4e-09 |
Identity: 48.21% |
Span: 168bp (34.4%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm6 [Homo sapiens] >gi113865835|ref|NP_084421.1| U6 snRNA-associated Sm-like pro... |
| Match: gi|31212689|ref|XP_315329.1| |
score: 61.62 |
e-value: 5.2e-09 |
Identity: 48.21% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|31212689|ref|XP_315329.1| ENSANGP00000021121 [Anopheles gambiae] gi|21299149|gb|EAA11294.1| ENSANGP00000021121 [An... |
| Match: gi|21554327|gb|AAM63434.1| |
score: 61.23 |
e-value: 6.9e-09 |
Identity: 45.76% |
Span: 177bp (36.2%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana] |
| Match: gi|15232179|ref|NP_191540.1| |
score: 61.23 |
e-value: 6.9e-09 |
Identity: 45.76% |
Span: 177bp (36.2%) |
Frame: 1 |
| small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative ... |
| Match: gi|13812032|ref|NP_113163.1| |
score: 60.85 |
e-value: 8.9e-09 |
Identity: 50% |
Span: 162bp (33.1%) |
Frame: 1 |
| gi|13812032|ref|NP_113163.1| small nuclear ribonucleoprotein F [Guillardia theta] gi|25329696|pir||C90130 small nucle... |
| Match: gi|24656550|ref|NP_611528.1| |
score: 60.08 |
e-value: 1.5e-08 |
Identity: 48.21% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|24656550|ref|NP_611528.1| CG9344-PA [Drosophila melanogaster] gi|7291213|gb|AAF46645.1| CG9344-PA [Drosophila mela... |
| Match: gi|15224366|ref|NP_181909.1| |
score: 60.08 |
e-value: 1.5e-08 |
Identity: 42.86% |
Span: 168bp (34.4%) |
Frame: 1 |
| small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative ... |
| Match: gi|39589389|emb|CAE74418.1| |
score: 58.92 |
e-value: 3.4e-08 |
Identity: 46.43% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|39589389|emb|CAE74418.1| Hypothetical protein CBG22150 [Caenorhabditis briggsae] |
| Match: gi|17510579|ref|NP_490883.1| |
score: 58.92 |
e-value: 3.4e-08 |
Identity: 46.43% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|17510579|ref|NP_490883.1| u6 snRNA-associated Sm-like protein (lsm-5) [Caenorhabditis elegans] gi|14916400|gb|AAK7... |
| Match: gi|20861373|ref|XP_134104.1| |
score: 58.92 |
e-value: 3.4e-08 |
Identity: 48.21% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|20861373|ref|XP_134104.1| RIKEN cDNA 2410088K19 [Mus musculus] |
| Match: gi|9837170|gb|AAG00459.1| |
score: 58.15 |
e-value: 5.8e-08 |
Identity: 55.17% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|9837170|gb|AAG00459.1| Sm-F [Trypanosoma brucei] |
| Match: gi|19115292|ref|NP_594380.1| |
score: 56.22 |
e-value: 2.2e-07 |
Identity: 42.86% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|19115292|ref|NP_594380.1| small nuclear ribonucleoprotein, F-like [Schizosaccharomyces pombe] gi|10720076|sp|Q9UUI... |
| Match: gi|13786869|pdb|1I81|A |
score: 55.84 |
e-value: 2.9e-07 |
Identity: 46.55% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From Methanobacterium Thermoautotrophic... |
| Match: gi|34879731|ref|XP_344138.1| |
score: 55.84 |
e-value: 2.9e-07 |
Identity: 46.3% |
Span: 162bp (33.1%) |
Frame: 1 |
| gi|34879731|ref|XP_344138.1| similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) [Rattus norvegicus] |
| Match: gi|29726339|pdb|1JBM|A |
score: 55.84 |
e-value: 2.9e-07 |
Identity: 46.55% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like Archaeal Protein From Methanobacte... |
| Match: gi|20150503|pdb|1JRI|A |
score: 55.84 |
e-value: 2.9e-07 |
Identity: 46.55% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein With Two Heptamers In The Asymme... |
| Match: gi|15678676|ref|NP_275791.1| |
score: 55.84 |
e-value: 2.9e-07 |
Identity: 46.55% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|15678676|ref|NP_275791.1| conserved protein [Methanothermobacter thermautotrophicus] gi|6094215|sp|O26745|RUXX_MET... |
| Match: gi|29726409|pdb|1LOJ|A |
score: 55.84 |
e-value: 2.9e-07 |
Identity: 46.55% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal Protein (Smap1) Bound To Uri... |
| Match: gi|34851678|ref|XP_344755.1| |
score: 55.84 |
e-value: 2.9e-07 |
Identity: 46.3% |
Span: 162bp (33.1%) |
Frame: 1 |
| gi|34851678|ref|XP_344755.1| similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F) [Rattus norvegicus] |
| Match: gi|42545628|gb|EAA68471.1| |
score: 53.53 |
e-value: 1.4e-06 |
Identity: 47.17% |
Span: 159bp (32.5%) |
Frame: 1 |
| gi|42545628|gb|EAA68471.1| hypothetical protein FG00458.1 [Gibberella zeae PH-1] |
| Match: gi|23049213|ref|ZP_00076446.1| |
score: 52.37 |
e-value: 3.2e-06 |
Identity: 43.1% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|23049213|ref|ZP_00076446.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Methanosarcina barkeri] |
| Match: gi|23619200|ref|NP_705162.1| |
score: 52.37 |
e-value: 3.2e-06 |
Identity: 40.68% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|23619200|ref|NP_705162.1| u6 snRNA-associated sm-like protein, putative [Plasmodium falciparum 3D7] gi|23615407|em... |
| Match: gi|19074156|ref|NP_584762.1| |
score: 51.99 |
e-value: 4.2e-06 |
Identity: 47.17% |
Span: 159bp (32.5%) |
Frame: 1 |
| gi|19074156|ref|NP_584762.1| SMALL NUCLEAR RIBONUCLEOPROTEIN F [Encephalitozoon cuniculi] gi|19068798|emb|CAD25266.1|... |
| Match: gi|38108971|gb|EAA54910.1| |
score: 51.99 |
e-value: 4.2e-06 |
Identity: 52% |
Span: 150bp (30.7%) |
Frame: 1 |
| gi|38108971|gb|EAA54910.1| hypothetical protein MG05701.4 [Magnaporthe grisea 70-15] |
| Match: gi|14324575|dbj|BAB59502.1| |
score: 51.6 |
e-value: 5.4e-06 |
Identity: 41.38% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium] |
| Match: gi|13541187|ref|NP_110875.1| |
score: 51.6 |
e-value: 5.4e-06 |
Identity: 41.38% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|13541187|ref|NP_110875.1| Small nuclear ribonucleoprotein (snRNP) homolog [Thermoplasma volcanium] gi|20178114|sp|... |
| Match: gi|20092011|ref|NP_618086.1| |
score: 51.6 |
e-value: 5.4e-06 |
Identity: 43.1% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|20092011|ref|NP_618086.1| Sm protein [Methanosarcina acetivorans str. C2A] gi|30173335|sp|Q8TL47|RUXX_METAC Putati... |
| Match: gi|16082245|ref|NP_394696.1| |
score: 51.22 |
e-value: 7.1e-06 |
Identity: 39.66% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein related protein [Thermoplasma acidophilum] gi|11387090|s... |
| Match: gi|23483747|gb|EAA19315.1| |
score: 51.22 |
e-value: 7.1e-06 |
Identity: 40.68% |
Span: 177bp (36.2%) |
Frame: 1 |
| gi|23483747|gb|EAA19315.1| probable u6 snRNA-associated sm-like protein lsm6 [Plasmodium yoelii yoelii] |
| Match: gi|23489340|gb|EAA21551.1| |
score: 50.06 |
e-value: 1.6e-05 |
Identity: 61.76% |
Span: 102bp (20.9%) |
Frame: 1 |
| gi|23489340|gb|EAA21551.1| hypothetical protein [Plasmodium yoelii yoelii] |
| Match: gi|28829666|gb|AAO52182.1| |
score: 50.06 |
e-value: 1.6e-05 |
Identity: 44.44% |
Span: 162bp (33.1%) |
Frame: 1 |
| gi|28829666|gb|AAO52182.1| similar to Homo sapiens (Human). Sm protein F [Dictyostelium discoideum] |
| Match: gi|21226441|ref|NP_632363.1| |
score: 50.06 |
e-value: 1.6e-05 |
Identity: 41.38% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|21226441|ref|NP_632363.1| putative snRNP Sm-like protein [Methanosarcina mazei Goe1] gi|30173324|sp|Q8PZZ9|RUXX_ME... |
| Match: gi|18977914|ref|NP_579271.1| |
score: 49.29 |
e-value: 2.7e-05 |
Identity: 44.64% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus DSM 3638] gi|23822154|sp|... |
| Match: gi|11498481|ref|NP_069709.1| |
score: 49.29 |
e-value: 2.7e-05 |
Identity: 38.71% |
Span: 186bp (38.0%) |
Frame: 1 |
| gi|11498481|ref|NP_069709.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304] gi|6094214|sp|O29386|RUXX_ARCFU Putati... |
| Match: gi|28948591|pdb|1M8V|A |
score: 47.37 |
e-value: 0.0001 |
Identity: 42.86% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex With A Uridine Heptamer gi|2894... |
| Match: gi|14591301|ref|NP_143379.1| |
score: 47.37 |
e-value: 0.0001 |
Identity: 42.86% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|14591301|ref|NP_143379.1| small nucleoprotein [Pyrococcus horikoshii] gi|6094216|sp|O74016|RUXX_PYRHO Putative snR... |
| Match: gi|14520857|ref|NP_126332.1| |
score: 47.37 |
e-value: 0.0001 |
Identity: 42.86% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|14520857|ref|NP_126332.1| snRNP, putative [Pyrococcus abyssi] gi|10720266|sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-l... |
| Match: gi|41720360|ref|ZP_00149173.1| |
score: 47.37 |
e-value: 0.0001 |
Identity: 41.38% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|41720360|ref|ZP_00149173.1| hypothetical protein Mbur016401 [Methanococcoides burtonii DSM 6242] |
| Match: gi|22406344|ref|ZP_00001194.1| |
score: 46.98 |
e-value: 0.00013 |
Identity: 36.21% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|22406344|ref|ZP_00001194.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Ferroplasma acidarmanus] |
| Match: gi|15897658|ref|NP_342263.1| |
score: 45.05 |
e-value: 0.00051 |
Identity: 43.1% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|15897658|ref|NP_342263.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus solfataricus] gi|25329698|pir||F... |
| Match: gi|19113071|ref|NP_596279.1| |
score: 44.67 |
e-value: 0.00066 |
Identity: 43.1% |
Span: 171bp (35.0%) |
Frame: 1 |
| gi|19113071|ref|NP_596279.1| putative small ribonuclear protein-sm like [Schizosaccharomyces pombe] gi|12230213|sp|O1... |
| Match: gi|18312179|ref|NP_558846.1| |
score: 44.28 |
e-value: 0.00087 |
Identity: 41.67% |
Span: 180bp (36.8%) |
Frame: 1 |
| gi|18312179|ref|NP_558846.1| small nuclear ribonucleoprotein homolog (Sm-like) [Pyrobaculum aerophilum] gi|18159615|g... |
| Match: gi|14277786|pdb|1I8F|A |
score: 44.28 |
e-value: 0.00087 |
Identity: 41.67% |
Span: 180bp (36.8%) |
Frame: 1 |
| gi|14277786|pdb|1I8F|A Chain A, The Crystal Structure Of A Heptameric Archaeal Sm Protein: Implications For The Eukar... |
| Match: gi|15897150|ref|NP_341755.1| |
score: 43.51 |
e-value: 0.001 |
Identity: 41.67% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|15897150|ref|NP_341755.1| Small nuclear riboprotein protein (snRNP-1) [Sulfolobus solfataricus] gi|25394288|pir||B... |
| Match: gi|23508277|ref|NP_700946.1| |
score: 42.74 |
e-value: 0.003 |
Identity: 39.66% |
Span: 171bp (35.0%) |
Frame: 1 |
| gi|23508277|ref|NP_700946.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated Sm-like protein LsM4, putati... |
| Match: gi|21228485|ref|NP_634407.1| |
score: 42.74 |
e-value: 0.003 |
Identity: 36.21% |
Span: 171bp (35.0%) |
Frame: 1 |
| gi|21228485|ref|NP_634407.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Goe1] gi|20906968|gb|AAM320... |
| Match: gi|15920992|ref|NP_376661.1| |
score: 42.36 |
e-value: 0.003 |
Identity: 44.23% |
Span: 156bp (31.9%) |
Frame: 1 |
| gi|15920992|ref|NP_376661.1| 79aa long hypothetical small nuclear ribonucleoprotein [Sulfolobus tokodaii] gi|15621776... |
| Match: gi|23050735|ref|ZP_00077593.1| |
score: 41.97 |
e-value: 0.004 |
Identity: 41.86% |
Span: 129bp (26.4%) |
Frame: 1 |
| gi|23050735|ref|ZP_00077593.1| COG1958: Small nuclear ribonucleoprotein (snRNP) homolog [Methanosarcina barkeri] |
| Match: gi|20090273|ref|NP_616348.1| |
score: 41.97 |
e-value: 0.004 |
Identity: 41.3% |
Span: 138bp (28.2%) |
Frame: 1 |
| gi|20090273|ref|NP_616348.1| Sm protein [Methanosarcina acetivorans str. C2A] gi|19915270|gb|AAM04828.1| Sm protein [... |
| Match: gi|41718944|ref|ZP_00147889.1| |
score: 41.59 |
e-value: 0.006 |
Identity: 41.86% |
Span: 129bp (26.4%) |
Frame: 1 |
| gi|41718944|ref|ZP_00147889.1| hypothetical protein Mbur174001 [Methanococcoides burtonii DSM 6242] |
| Match: gi|23485036|gb|EAA20166.1| |
score: 41.2 |
e-value: 0.007 |
Identity: 39.66% |
Span: 171bp (35.0%) |
Frame: 1 |
| gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii] |
| Match: gi|14600779|ref|NP_147300.1| |
score: 40.43 |
e-value: 0.013 |
Identity: 39.66% |
Span: 174bp (35.6%) |
Frame: 1 |
| gi|14600779|ref|NP_147300.1| small nuclear ribonucleoprotein [Aeropyrum pernix] gi|10720267|sp|Q9YEQ5|RUXX_AERPE Puta... |
| Match: gi|42551173|gb|EAA74016.1| |
score: 40.05 |
e-value: 0.016 |
Identity: 38.6% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|42551173|gb|EAA74016.1| hypothetical protein FG05320.1 [Gibberella zeae PH-1] |
| Match: gi|12834762|dbj|BAB23033.1| |
score: 40.05 |
e-value: 0.016 |
Identity: 38.6% |
Span: 168bp (34.4%) |
Frame: 1 |
| gi|12834762|dbj|BAB23033.1| unnamed protein product [Mus musculus] |
| Match: gi|21730739|pdb|1LJO|A |
score: 39.66 |
e-value: 0.021 |
Identity: 48.84% |
Span: 129bp (26.4%) |
Frame: 1 |
| gi|21730739|pdb|1LJO|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm2) From Archaeoglobus Fulgidus At 1.95a... |
| Match: gi|15234669|ref|NP_194751.1| |
score: 37.74 |
e-value: 3e-27 |
Identity: 88.89% |
Span: 54bp (11.0%) |
Frame: 3 |
| RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F) [Arabidopsis thaliana] >gi10720264|sp|Q9SUM2.1|RUXF_ARATH RecName: Full=Prob... |
| Match: gi|39589637|emb|CAE66872.1| |
score: 30.03 |
e-value: 1.5e-22 |
Identity: 76.47% |
Span: 51bp (10.4%) |
Frame: 3 |
| gi|39589637|emb|CAE66872.1| Hypothetical protein CBG12250 [Caenorhabditis briggsae] |
| Match: gi|17557029|ref|NP_498708.1| |
score: 30.03 |
e-value: 1.1e-22 |
Identity: 76.47% |
Span: 51bp (10.4%) |
Frame: 3 |
| gi|17557029|ref|NP_498708.1| small nuclear ribonucleoprotein, small nuclear ribonucleoprotein SNR-5 (9.2 kD) (snr-5) ... |
| Match: gi|39645845|gb|AAH63397.1| |
score: 29.65 |
e-value: 1.6e-25 |
Identity: 58.33% |
Span: 66bp (13.5%) |
Frame: 3 |
| gi|39645845|gb|AAH63397.1| Unknown (protein for IMAGE:5176590) [Homo sapiens] |
| Match: gi|495021|gb|AAA28445.1| |
score: 29.65 |
e-value: 1.5e-22 |
Identity: 70.59% |
Span: 51bp (10.4%) |
Frame: 3 |
| gi|495021|gb|AAA28445.1| membrane-associated protein |
| Match: gi|22024001|ref|NP_523708.2| |
score: 29.65 |
e-value: 1.5e-22 |
Identity: 70.59% |
Span: 51bp (10.4%) |
Frame: 3 |
| gi|22024001|ref|NP_523708.2| Developmental embryonic B CG16792-PA [Drosophila melanogaster] gi|29337191|sp|Q24297|RUX... |
| Match: gi|33876795|gb|AAH02505.2| |
score: 29.65 |
e-value: 1.5e-25 |
Identity: 58.33% |
Span: 66bp (13.5%) |
Frame: 3 |
| gi|33876795|gb|AAH02505.2| SNRPF protein [Homo sapiens] |
| Match: gi|31212897|ref|XP_312266.1| |
score: 28.88 |
e-value: 2.9e-24 |
Identity: 73.33% |
Span: 45bp (9.2%) |
Frame: 3 |
| gi|31212897|ref|XP_312266.1| ENSANGP00000002801 [Anopheles gambiae] gi|30177439|gb|EAA07677.2| ENSANGP00000002801 [An... |
| Match: gi|42415804|gb|AAS15770.1| |
score: 28.88 |
e-value: 2.5e-22 |
Identity: 73.33% |
Span: 45bp (9.2%) |
Frame: 3 |
| gi|42415804|gb|AAS15770.1| DebB [Drosophila simulans] |
| Match: gi|41946811|gb|AAH66015.1| |
score: 28.49 |
e-value: 3.5e-25 |
Identity: 68.75% |
Span: 48bp (9.8%) |
Frame: 3 |
| gi|41946811|gb|AAH66015.1| Unknown (protein for IMAGE:5715059) [Mus musculus] |
| Match: gi|34864945|ref|XP_345815.1| |
score: 28.49 |
e-value: 3.5e-25 |
Identity: 68.75% |
Span: 48bp (9.8%) |
Frame: 3 |
| gi|34864945|ref|XP_345815.1| similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Ratt... |
| Match: gi|4507131|ref|NP_003086.1| |
score: 28.49 |
e-value: 3.5e-25 |
Identity: 68.75% |
Span: 48bp (9.8%) |
Frame: 3 |
| gi|4507131|ref|NP_003086.1| small nuclear ribonucleoprotein polypeptide F [Homo sapiens] gi|6094209|sp|Q15356|RUXF_HU... |
| Match: gi|19112893|ref|NP_596101.1| |
score: 27.34 |
e-value: 1.4e-19 |
Identity: 66.67% |
Span: 54bp (11.0%) |
Frame: 3 |
| gi|19112893|ref|NP_596101.1| small nuclear ribonucleoprotein F [Schizosaccharomyces pombe] gi|6094210|sp|O59734|RUXF_... |
| Match: gi|38079111|ref|XP_357414.1| |
score: 26.56 |
e-value: 1.2e-24 |
Identity: 62.5% |
Span: 48bp (9.8%) |
Frame: 3 |
| gi|38079111|ref|XP_357414.1| similar to SNRPF protein [Mus musculus] |
| Match: gi|23508471|ref|NP_701140.1| |
score: 25.02 |
e-value: 2.1e-12 |
Identity: 50% |
Span: 60bp (12.3%) |
Frame: 3 |
| gi|23508471|ref|NP_701140.1| small nuclear ribonucleoprotein F, putative [Plasmodium falciparum 3D7] gi|23496205|gb|A... |
| Match: gi|27704896|ref|XP_230870.1| |
score: 25.02 |
e-value: 3.1e-19 |
Identity: 76.92% |
Span: 39bp (8.0%) |
Frame: 3 |
| gi|27704896|ref|XP_230870.1| similar to Small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Ratt... |
| Match: gi|38076106|ref|XP_356732.1| |
score: 22.33 |
e-value: 6.9e-18 |
Identity: 56.25% |
Span: 48bp (9.8%) |
Frame: 3 |
| gi|38076106|ref|XP_356732.1| similar to SNRPF protein [Mus musculus] |
| Match: gi|27574143|pdb|1N9R|A |
score: 21.17 |
e-value: 5.8e-13 |
Identity: 47.62% |
Span: 60bp (12.3%) |
Frame: 3 |
| gi|27574143|pdb|1N9R|A Chain A, Crystal Structure Of A Heptameric Ring Complex Of Yeast Smf In Spacegroup P4122 gi|27... |
| Match: gi|6325440|ref|NP_015508.1| |
score: 21.17 |
e-value: 5.8e-13 |
Identity: 47.62% |
Span: 60bp (12.3%) |
Frame: 3 |
| gi|6325440|ref|NP_015508.1| Sm or Sm-like snRNP protein; Smx3p [Saccharomyces cerevisiae] gi|1711405|sp|P54999|RUXF_Y... |
| Match: gi|27574150|pdb|1N9S|A |
score: 21.17 |
e-value: 7.9e-12 |
Identity: 47.62% |
Span: 60bp (12.3%) |
Frame: 3 |
| gi|27574150|pdb|1N9S|A Chain A, Crystal Structure Of Yeast Smf In Spacegroup P43212 gi|27574151|pdb|1N9S|B Chain B, C... |
|
| 24 lower scoring hits censored -- only 100 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 5 hits recorded |
| Match: At4g30220.1 |
score: 105.5 |
e-value: 1.2e-28 |
Identity: 80% |
Span: 180bp (36.8%) |
Frame: 1 |
| At4g30220.1 68411.m03923 snRNP Sm protein F - like Sm protein F, Homo sapiens, PIR:S55053 |
| Match: At3g59810.1 |
score: 61.23 |
e-value: 2.7e-10 |
Identity: 45.76% |
Span: 177bp (36.2%) |
Frame: 1 |
| At3g59810.1 68410.m06169 U6 snRNA-associated Sm-related protein U6 snRNA-associated Sm-like protein LSm6 - Homo sapie... |
| Match: At2g43810.1 |
score: 60.08 |
e-value: 6.1e-10 |
Identity: 42.86% |
Span: 168bp (34.4%) |
Frame: 1 |
| At2g43810.1 68409.m04923 small nuclear ribonucleo protein polypeptide F -related |
| Match: At5g27720.1 |
score: 38.89 |
e-value: 0.001 |
Identity: 40% |
Span: 168bp (34.4%) |
Frame: 1 |
| At5g27720.1 68412.m03030 glycine rich protein - like glycine rich protein, Nicotiana tabacum, PIR:S54169 |
| Match: At4g30220.1 |
score: 37.74 |
e-value: 1.2e-28 |
Identity: 88.89% |
Span: 54bp (11.0%) |
Frame: 3 |
| At4g30220.1 68411.m03923 snRNP Sm protein F - like Sm protein F, Homo sapiens, PIR:S55053 |
|
