| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|22135904|gb|AAM91534.1| |
score: 199.5 |
e-value: 7.8e-51 |
Identity: 72.39% |
Span: 399bp (98.8%) |
Frame: 3 |
| sigma factor SigC [Arabidopsis thaliana] |
| Match: gi|15232364|ref|NP_190960.1| |
score: 199.5 |
e-value: 7.8e-51 |
Identity: 72.39% |
Span: 399bp (98.8%) |
Frame: 3 |
| SIGC (RNA POLYMERASE SIGMA-SUBUNIT C); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|2398853|dbj|BAA22215.1| |
score: 198.7 |
e-value: 1.3e-50 |
Identity: 71.64% |
Span: 399bp (98.8%) |
Frame: 3 |
| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] |
| Match: gi|7363220|emb|CAB83107.1| |
score: 198 |
e-value: 2.3e-50 |
Identity: 71.64% |
Span: 399bp (98.8%) |
Frame: 3 |
| sigma factor 3 [Sinapis alba] |
| Match: gi|2353173|gb|AAB69385.1| |
score: 125.2 |
e-value: 1.9e-28 |
Identity: 41.04% |
Span: 402bp (99.5%) |
Frame: 3 |
| sigma factor 2 [Arabidopsis thaliana] |
| Match: gi|15223259|ref|NP_172330.1| |
score: 125.2 |
e-value: 1.9e-28 |
Identity: 41.04% |
Span: 402bp (99.5%) |
Frame: 3 |
| SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|26452898|dbj|BAC43527.1| |
score: 125.2 |
e-value: 1.9e-28 |
Identity: 41.04% |
Span: 402bp (99.5%) |
Frame: 3 |
| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana] |
| Match: gi|12697780|dbj|BAB21618.1| |
score: 119 |
e-value: 1.3e-26 |
Identity: 37.31% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella patens] gi|14669832|dbj|BAB62008.1| PpSIG2 [Physcomitrella patens] |
| Match: gi|7363218|emb|CAB83106.1| |
score: 118.6 |
e-value: 1.7e-26 |
Identity: 38.81% |
Span: 402bp (99.5%) |
Frame: 3 |
| sigma factor 2 [Sinapis alba] |
| Match: gi|20159761|gb|AAM12034.1| |
score: 116.3 |
e-value: 8.6e-26 |
Identity: 41.04% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|20159761|gb|AAM12034.1| sigma factor protein [Zea mays] |
| Match: gi|2117930|pir||S61292 |
score: 111.3 |
e-value: 2.8e-24 |
Identity: 37.86% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|2117930|pir||S61292 transcription initiation factor sigma mysA - Mycobacterium smegmatis gi|555680|gb|AAA85642.1| ... |
| Match: gi|18477828|emb|CAC83737.1| |
score: 109 |
e-value: 1.4e-23 |
Identity: 37.14% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|18477828|emb|CAC83737.1| RNA polymerase sigma 70 [Rhodococcus fascians] |
| Match: gi|17232755|ref|NP_489303.1| |
score: 108.6 |
e-value: 1.8e-23 |
Identity: 39.66% |
Span: 348bp (86.1%) |
Frame: 3 |
| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120] >gi75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD ... |
| Match: gi|23128093|ref|ZP_00109949.1| |
score: 108.2 |
e-value: 2.4e-23 |
Identity: 39.66% |
Span: 348bp (86.1%) |
Frame: 3 |
| gi|23128093|ref|ZP_00109949.1| hypothetical protein [Nostoc punctiforme] gi|8118663|gb|AAF73062.1| primary vegetative... |
| Match: gi|558881|gb|AAB41506.1| |
score: 108.2 |
e-value: 2.4e-23 |
Identity: 37.4% |
Span: 369bp (91.3%) |
Frame: 3 |
| gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] |
| Match: gi|1588486|prf||2208419B |
score: 108.2 |
e-value: 2.4e-23 |
Identity: 37.4% |
Span: 369bp (91.3%) |
Frame: 3 |
| RNA polymerase sigma factor |
| Match: gi|4587113|dbj|BAA76622.1| |
score: 107.8 |
e-value: 3.1e-23 |
Identity: 39.06% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|4587113|dbj|BAA76622.1| RpoT [Mycobacterium leprae] |
| Match: gi|1072017|gb|AAA81640.1| |
score: 107.8 |
e-value: 3.1e-23 |
Identity: 39.06% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|1072017|gb|AAA81640.1| sigma factor gi|1072019|gb|AAA81641.1| sigma factor |
| Match: gi|15609840|ref|NP_217219.1| |
score: 107.8 |
e-value: 3.1e-23 |
Identity: 39.06% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|15609840|ref|NP_217219.1| sigA [Mycobacterium tuberculosis H37Rv] gi|15842241|ref|NP_337278.1| RNA polymerase prin... |
| Match: gi|1072021|gb|AAA81642.1| |
score: 107.8 |
e-value: 3.1e-23 |
Identity: 39.06% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|1072021|gb|AAA81642.1| sigma factor |
| Match: gi|15827492|ref|NP_301755.1| |
score: 107.8 |
e-value: 3.1e-23 |
Identity: 39.06% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|15827492|ref|NP_301755.1| RNA polymerase sigma factor [Mycobacterium leprae] gi|25288489|pir||H87036 RNA polymeras... |
| Match: gi|5030433|gb|AAC44889.2| |
score: 107.5 |
e-value: 4e-23 |
Identity: 36.3% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|5030433|gb|AAC44889.2| sigma 70-type sigma factor SigA [Thermotoga maritima] |
| Match: gi|15644200|ref|NP_229250.1| |
score: 107.5 |
e-value: 4e-23 |
Identity: 36.3% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|15644200|ref|NP_229250.1| RNA polymerase sigma-A factor [Thermotoga maritima] gi|6831649|sp|P77994|RPSD_THEMA RNA ... |
| Match: gi|217140|dbj|BAA01749.1| |
score: 106.7 |
e-value: 6.8e-23 |
Identity: 38.02% |
Span: 363bp (89.9%) |
Frame: 3 |
| gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus sp.] |
| Match: gi|37522141|ref|NP_925518.1| |
score: 106.3 |
e-value: 8.9e-23 |
Identity: 36.07% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|37522141|ref|NP_925518.1| principal RNA polymerase sigma factor [Gloeobacter violaceus] gi|35213141|dbj|BAC90513.1... |
| Match: gi|33863540|ref|NP_895100.1| |
score: 105.5 |
e-value: 1.5e-22 |
Identity: 36.07% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|33863540|ref|NP_895100.1| Putative principal RNA polymerase sigma factor [Prochlorococcus marinus str. MIT 9313] g... |
| Match: gi|33861053|ref|NP_892614.1| |
score: 105.5 |
e-value: 1.5e-22 |
Identity: 36.07% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|33861053|ref|NP_892614.1| Putative principal RNA polymerase sigma factor [Prochlorococcus marinus subsp. pastoris ... |
| Match: gi|585928|sp|P38023|RPSD_SYNP7 |
score: 105.5 |
e-value: 1.5e-22 |
Identity: 37.19% |
Span: 363bp (89.9%) |
Frame: 3 |
| gi|585928|sp|P38023|RPSD_SYNP7 RNA POLYMERASE SIGMA FACTOR RPOD1 |
| Match: gi|33866315|ref|NP_897874.1| |
score: 105.1 |
e-value: 2e-22 |
Identity: 36.67% |
Span: 360bp (89.1%) |
Frame: 3 |
| gi|33866315|ref|NP_897874.1| Putative principal RNA polymerase sigma factor [Synechococcus sp. WH 8102] gi|33639290|e... |
| Match: gi|97628|pir||S24172 |
score: 105.1 |
e-value: 2e-22 |
Identity: 38.02% |
Span: 363bp (89.9%) |
Frame: 3 |
| gi|97628|pir||S24172 transcription initiation factor sigma A - Synechococcus sp |
| Match: gi|23041419|ref|ZP_00072877.1| |
score: 104.8 |
e-value: 2.6e-22 |
Identity: 36.29% |
Span: 372bp (92.1%) |
Frame: 3 |
| gi|23041419|ref|ZP_00072877.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Trichodesmium e... |
| Match: gi|13195265|gb|AAK15630.1| |
score: 104.8 |
e-value: 2.6e-22 |
Identity: 35.82% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|13195265|gb|AAK15630.1| RNA polymerase major sigma subunit [Corynebacterium ammoniagenes] |
| Match: gi|23017717|ref|ZP_00057441.1| |
score: 104.8 |
e-value: 2.6e-22 |
Identity: 35.82% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|23017717|ref|ZP_00057441.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Thermobifida fu... |
| Match: gi|37519772|ref|NP_923149.1| |
score: 104.4 |
e-value: 3.4e-22 |
Identity: 41.23% |
Span: 342bp (84.7%) |
Frame: 3 |
| gi|37519772|ref|NP_923149.1| group 2 sigma 70-type sigma factor [Gloeobacter violaceus] gi|35210763|dbj|BAC88144.1| g... |
| Match: gi|38233991|ref|NP_939758.1| |
score: 104.4 |
e-value: 3.4e-22 |
Identity: 36.09% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|38233991|ref|NP_939758.1| RNA polymerase sigma factor [Corynebacterium diphtheriae] gi|38200253|emb|CAE49937.1| RN... |
| Match: gi|1808669|emb|CAA71796.1| |
score: 104.4 |
e-value: 3.4e-22 |
Identity: 38.52% |
Span: 366bp (90.6%) |
Frame: 3 |
| gi|1808669|emb|CAA71796.1| RNA polymerase [Renibacterium salmoninarum] |
| Match: gi|1519642|gb|AAB07554.1| |
score: 104 |
e-value: 4.4e-22 |
Identity: 38.06% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|1519642|gb|AAB07554.1| SigD [Chloroflexus aurantiacus] |
| Match: gi|1582791|prf||2119302A |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|1582791|prf||2119302A sigma factor |
| Match: gi|629227|pir||S41307 |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|629227|pir||S41307 transcription initiation factor sigma - Streptomyces griseus gi|581664|emb|CAA53564.1| sigma fa... |
| Match: gi|33239946|ref|NP_874888.1| |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 38.18% |
Span: 330bp (81.7%) |
Frame: 3 |
| gi|33239946|ref|NP_874888.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) [Prochlorococcus marinus sub... |
| Match: gi|22298160|ref|NP_681407.1| |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 36.97% |
Span: 357bp (88.4%) |
Frame: 3 |
| gi|22298160|ref|NP_681407.1| principal RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22294339|d... |
| Match: gi|37520903|ref|NP_924280.1| |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 41.23% |
Span: 342bp (84.7%) |
Frame: 3 |
| gi|37520903|ref|NP_924280.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35211898|dbj|BAC89275.1| g... |
| Match: gi|419697|pir||JN0443 |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|419697|pir||JN0443 transcription initiation factor sigma homolog hrdB - Streptomyces aureofaciens gi|153306|gb|AAA... |
| Match: gi|29828986|ref|NP_823620.1| |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|29828986|ref|NP_823620.1| putative RNA polymerase major sigma factor, sigma-70 family [Streptomyces avermitilis MA... |
| Match: gi|98896|pir||S11712 |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|98896|pir||S11712 transcription initiation factor sigma hrdB - Streptomyces coelicolor gi|48745|emb|CAA37175.1| un... |
| Match: gi|11132962|sp|P77951|HRDB_STRGR |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|11132962|sp|P77951|HRDB_STRGR RNA polymerase principal sigma factor hrdB gi|1617256|gb|AAB16905.1| principal sigma... |
| Match: gi|21224164|ref|NP_629943.1| |
score: 103.6 |
e-value: 5.8e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|21224164|ref|NP_629943.1| major vegetative sigma factor [Streptomyces coelicolor A3(2)] gi|12644145|sp|P18183|HRDB... |
| Match: gi|2117918|pir||I40872 |
score: 103.2 |
e-value: 7.6e-22 |
Identity: 36.92% |
Span: 390bp (96.5%) |
Frame: 3 |
| gi|2117918|pir||I40872 transcription initiation factor sigma 70 - Chlamydophila psittaci gi|520418|gb|AAA50747.1| maj... |
| Match: gi|16752284|ref|NP_445653.1| |
score: 103.2 |
e-value: 7.6e-22 |
Identity: 36.92% |
Span: 390bp (96.5%) |
Frame: 3 |
| gi|16752284|ref|NP_445653.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila pneumoniae AR39] gi|11261352... |
| Match: gi|29840756|ref|NP_829862.1| |
score: 103.2 |
e-value: 7.6e-22 |
Identity: 36.92% |
Span: 390bp (96.5%) |
Frame: 3 |
| gi|29840756|ref|NP_829862.1| RNA polymerase sigma factor, sigma-70 family [Chlamydophila caviae GPIC] gi|29835106|gb|... |
| Match: gi|15618665|ref|NP_224951.1| |
score: 103.2 |
e-value: 7.6e-22 |
Identity: 36.92% |
Span: 390bp (96.5%) |
Frame: 3 |
| gi|15618665|ref|NP_224951.1| RNA Polymerase Sigma-66 [Chlamydophila pneumoniae CWL029] gi|15836289|ref|NP_300813.1| R... |
| Match: gi|22972257|ref|ZP_00019146.1| |
score: 103.2 |
e-value: 7.6e-22 |
Identity: 37.31% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|22972257|ref|ZP_00019146.1| hypothetical protein [Chloroflexus aurantiacus] |
| Match: gi|12958492|gb|AAK09321.1| |
score: 102.8 |
e-value: 9.9e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|12958492|gb|AAK09321.1| sigma factor SigA [Brevibacterium flavum] |
| Match: gi|23308878|ref|NP_601117.2| |
score: 102.8 |
e-value: 9.9e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|23308878|ref|NP_601117.2| DNA-directed RNA polymerase sigma subunit SigA [Corynebacterium glutamicum ATCC 13032] g... |
| Match: gi|25028360|ref|NP_738414.1| |
score: 102.8 |
e-value: 9.9e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|25028360|ref|NP_738414.1| sigma factor SigA [Corynebacterium efficiens YS-314] gi|23493645|dbj|BAC18614.1| sigma f... |
| Match: gi|1149588|emb|CAA89984.1| |
score: 102.8 |
e-value: 9.9e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|1149588|emb|CAA89984.1| SigA sigma factor [Corynebacterium glutamicum] |
| Match: gi|28493466|ref|NP_787627.1| |
score: 102.8 |
e-value: 9.9e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|28493466|ref|NP_787627.1| RNA polymerase sigma factor [Tropheryma whipplei str. Twist] gi|28476507|gb|AAO44596.1| ... |
| Match: gi|28572422|ref|NP_789202.1| |
score: 102.8 |
e-value: 9.9e-22 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|28572422|ref|NP_789202.1| RNA polymerase principal sigma factor hrdb [Tropheryma whipplei TW08/27] gi|28410553|emb... |
| Match: gi|7484278|pir||JC6134 |
score: 102.4 |
e-value: 1.3e-21 |
Identity: 37.12% |
Span: 396bp (98.0%) |
Frame: 3 |
| gi|7484278|pir||JC6134 DNA-directed RNA polymerase (EC 2.7.7.6) sigma chain - red alga (Cyanidium caldarium) gi|97398... |
| Match: gi|1710685|sp|P52322|RPSD_MICAE |
score: 102.1 |
e-value: 1.7e-21 |
Identity: 36.13% |
Span: 357bp (88.4%) |
Frame: 3 |
| gi|1710685|sp|P52322|RPSD_MICAE RNA POLYMERASE SIGMA FACTOR RPOD1 gi|2117922|pir||JC4952 transcription initiation fac... |
| Match: gi|34902100|ref|NP_912396.1| |
score: 101.7 |
e-value: 2.2e-21 |
Identity: 32.84% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|34902100|ref|NP_912396.1| unknown protein [Oryza sativa (japonica cultivar-group)] gi|29893614|gb|AAP06868.1| unkn... |
| Match: gi|23978372|dbj|BAC21150.1| |
score: 101.7 |
e-value: 2.2e-21 |
Identity: 40.57% |
Span: 318bp (78.7%) |
Frame: 3 |
| gi|23978372|dbj|BAC21150.1| principal sigma factor [Synechococcus sp. PCC 7001] |
| Match: gi|23039887|ref|ZP_00071426.1| |
score: 101.3 |
e-value: 2.9e-21 |
Identity: 36.09% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|23039887|ref|ZP_00071426.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Trichodesmium e... |
| Match: gi|16332132|ref|NP_442860.1| |
score: 100.9 |
e-value: 3.8e-21 |
Identity: 38.18% |
Span: 330bp (81.7%) |
Frame: 3 |
| gi|16332132|ref|NP_442860.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434770|pir||S76760 transcri... |
| Match: gi|22972102|ref|ZP_00019002.1| |
score: 100.9 |
e-value: 3.8e-21 |
Identity: 35.82% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|22972102|ref|ZP_00019002.1| hypothetical protein [Chloroflexus aurantiacus] |
| Match: gi|418631|pir||RNCW7H |
score: 100.5 |
e-value: 4.9e-21 |
Identity: 35.38% |
Span: 390bp (96.5%) |
Frame: 3 |
| gi|418631|pir||RNCW7H transcription initiation factor sigma 70 - Chlamydia trachomatis gi|144616|gb|AAA23168.1| sigma... |
| Match: gi|14669828|dbj|BAB62006.1| |
score: 100.5 |
e-value: 4.9e-21 |
Identity: 39.67% |
Span: 363bp (89.9%) |
Frame: 3 |
| gi|14669828|dbj|BAB62006.1| PpSIG1 [Physcomitrella patens] gi|14669830|dbj|BAB62007.1| PpSIG1 [Physcomitrella patens] |
| Match: gi|4336608|gb|AAD17855.1| |
score: 100.5 |
e-value: 4.9e-21 |
Identity: 32.09% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|4336608|gb|AAD17855.1| sigma factor SIG2B; ZmSIG2B [Zea mays] |
| Match: gi|15605346|ref|NP_220132.1| |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 35.38% |
Span: 390bp (96.5%) |
Frame: 3 |
| gi|15605346|ref|NP_220132.1| RNA Polymerase Sigma-66 [Chlamydia trachomatis] gi|1710679|sp|P18333|RPSD_CHLTR RNA poly... |
| Match: gi|15835519|ref|NP_297278.1| |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 35.38% |
Span: 390bp (96.5%) |
Frame: 3 |
| gi|15835519|ref|NP_297278.1| RNA polymerase sigma factor RpoD [Chlamydia muridarum] gi|7388084|sp|P56835|RPSD_CHLMU R... |
| Match: gi|20151056|pdb|1KU2|A |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 36.43% |
Span: 378bp (93.6%) |
Frame: 3 |
| gi|20151056|pdb|1KU2|A Chain A, Crystal Structure Of Thermus Aquaticus Rna Polymerase Sigma Subunit Fragment Containi... |
| Match: gi|4336606|gb|AAD17854.1| |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 33.58% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|4336606|gb|AAD17854.1| sigma factor SIG2A; ZmSIG2A [Zea mays] |
| Match: gi|21466021|pdb|1L9Z|H |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 36.43% |
Span: 378bp (93.6%) |
Frame: 3 |
| gi|21466021|pdb|1L9Z|H Chain H, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction Promoter Dna Complex At 6.5 ... |
| Match: gi|32474487|ref|NP_867481.1| |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|32474487|ref|NP_867481.1| transcription initiation factor sigma 70 [Pirellula sp.] gi|32445025|emb|CAD75027.1| tra... |
| Match: gi|23978350|dbj|BAC21142.1| |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|23978350|dbj|BAC21142.1| principal sigma factor [Xenococcus sp. PCC 7307] |
| Match: gi|28211633|ref|NP_782577.1| |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 36.3% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|28211633|ref|NP_782577.1| RNA polymerase sigma factor rpoD [Clostridium tetani E88] gi|28204075|gb|AAO36514.1| RNA... |
| Match: gi|21466008|pdb|1L9U|H |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 36.43% |
Span: 378bp (93.6%) |
Frame: 3 |
| gi|21466008|pdb|1L9U|H Chain H, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A Resolution gi|21466014|pdb|1L9U|Q ... |
| Match: gi|2764713|emb|CAA05353.1| |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 38.97% |
Span: 396bp (98.0%) |
Frame: 3 |
| gi|2764713|emb|CAA05353.1| sigma 70 [Campylobacter jejuni] |
| Match: gi|15792328|ref|NP_282151.1| |
score: 100.1 |
e-value: 6.4e-21 |
Identity: 38.97% |
Span: 396bp (98.0%) |
Frame: 3 |
| gi|15792328|ref|NP_282151.1| RNA polymerase sigma factor (sigma-70) [Campylobacter jejuni] gi|11261358|pir||F81375 RN... |
| Match: gi|23295779|gb|AAN12882.1| |
score: 99.75 |
e-value: 8.4e-21 |
Identity: 36.29% |
Span: 372bp (92.1%) |
Frame: 3 |
| gi|23295779|gb|AAN12882.1| principal sigma factor RpoD [Bifidobacterium animalis] |
| Match: gi|322102|pir||JC1397 |
score: 99.75 |
e-value: 8.4e-21 |
Identity: 38.39% |
Span: 336bp (83.2%) |
Frame: 3 |
| gi|322102|pir||JC1397 transcription initiation factor sigma, major - Lactococcus lactis gi|216733|dbj|BAA01038.1| RNA... |
| Match: gi|23129934|ref|ZP_00111755.1| |
score: 99.75 |
e-value: 8.4e-21 |
Identity: 36.09% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|23129934|ref|ZP_00111755.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|23465986|ref|NP_696589.1| |
score: 99.75 |
e-value: 8.4e-21 |
Identity: 36.29% |
Span: 372bp (92.1%) |
Frame: 3 |
| gi|23465986|ref|NP_696589.1| RNA polymerase principal sigma factor; sigma 70 [Bifidobacterium longum NCC2705] gi|2332... |
| Match: gi|7484279|pir||T14364 |
score: 99.75 |
e-value: 8.4e-21 |
Identity: 32.82% |
Span: 393bp (97.3%) |
Frame: 3 |
| gi|7484279|pir||T14364 probable transcription initiation factor sigma A, chloroplast - red alga (Cyanidium caldarium)... |
| Match: gi|19862496|sp|Q04506|RPSD_LACLA |
score: 99.75 |
e-value: 8.4e-21 |
Identity: 38.39% |
Span: 336bp (83.2%) |
Frame: 3 |
| gi|19862496|sp|Q04506|RPSD_LACLA RNA polymerase sigma factor rpoD (Sigma-42) |
| Match: gi|15672535|ref|NP_266709.1| |
score: 99.75 |
e-value: 8.4e-21 |
Identity: 38.39% |
Span: 336bp (83.2%) |
Frame: 3 |
| gi|15672535|ref|NP_266709.1| major RNA polymerase sigma factor [Lactococcus lactis subsp. lactis] gi|25288490|pir||A8... |
| Match: gi|1769588|gb|AAB95226.1| |
score: 99.37 |
e-value: 1.1e-20 |
Identity: 36.36% |
Span: 396bp (98.0%) |
Frame: 3 |
| gi|1769588|gb|AAB95226.1| sigma factor [Synechococcus sp.] |
| Match: gi|419699|pir||JN0445 |
score: 99.37 |
e-value: 1.1e-20 |
Identity: 32.33% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|419699|pir||JN0445 transcription initiation factor sigma homolog hrdE - Streptomyces aureofaciens gi|153309|gb|AAA... |
| Match: gi|26665386|dbj|BAC44904.1| |
score: 99.37 |
e-value: 1.1e-20 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|26665386|dbj|BAC44904.1| principal sigma factor [Fischerella major NIES 592] |
| Match: gi|26665382|dbj|BAC44902.1| |
score: 99.37 |
e-value: 1.1e-20 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|26665382|dbj|BAC44902.1| principal sigma factor [Anabaena planctonica NIES 810] |
| Match: gi|23978360|dbj|BAC21145.1| |
score: 99.37 |
e-value: 1.1e-20 |
Identity: 40.78% |
Span: 309bp (76.5%) |
Frame: 3 |
| gi|23978360|dbj|BAC21145.1| principal sigma factor [Pleurocapsa sp. PCC 7314] |
| Match: gi|23978340|dbj|BAC21139.1| |
score: 99.37 |
e-value: 1.1e-20 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|23978340|dbj|BAC21139.1| principal sigma factor [Stanieria cyanosphaera str. PCC 7437] |
| Match: gi|23978369|dbj|BAC21149.1| |
score: 99.37 |
e-value: 1.1e-20 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|23978369|dbj|BAC21149.1| principal sigma factor [Pseudanabaena sp. PCC 7403] |
| Match: gi|23978337|dbj|BAC21138.1| |
score: 99.37 |
e-value: 1.1e-20 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|23978337|dbj|BAC21138.1| principal sigma factor [Pseudanabaena sp. PCC 7367] |
| Match: gi|20808174|ref|NP_623345.1| |
score: 98.98 |
e-value: 1.4e-20 |
Identity: 34.81% |
Span: 402bp (99.5%) |
Frame: 3 |
| gi|20808174|ref|NP_623345.1| DNA-directed RNA polymerase sigma subunits (sigma70/sigma32) [Thermoanaerobacter tengcon... |
| Match: gi|23978365|dbj|BAC21147.1| |
score: 98.98 |
e-value: 1.4e-20 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|23978365|dbj|BAC21147.1| principal sigma factor [Leptolyngbya sp. PCC 7375] |
| Match: gi|23978335|dbj|BAC21137.1| |
score: 98.98 |
e-value: 1.4e-20 |
Identity: 40% |
Span: 315bp (78.0%) |
Frame: 3 |
| gi|23978335|dbj|BAC21137.1| principal sigma factor [Phormidium sp. IAM M-99] |
| Match: gi|23037952|ref|ZP_00070144.1| |
score: 98.98 |
e-value: 1.4e-20 |
Identity: 37.4% |
Span: 369bp (91.3%) |
Frame: 3 |
| gi|23037952|ref|ZP_00070144.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Oenococcus oeni... |
| Match: gi|17231292|ref|NP_487840.1| |
score: 98.6 |
e-value: 1.9e-20 |
Identity: 35.34% |
Span: 399bp (98.8%) |
Frame: 3 |
| gi|17231292|ref|NP_487840.1| group 2 sigma 70-type sigma factor E [Nostoc sp. PCC 7120] gi|25288486|pir||AI2280 group... |
| Match: gi|23018604|ref|ZP_00058319.1| |
score: 98.6 |
e-value: 1.9e-20 |
Identity: 34.09% |
Span: 396bp (98.0%) |
Frame: 3 |
| gi|23018604|ref|ZP_00058319.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Thermobifida fu... |
|
| 150 lower scoring hits censored -- only 100 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 8 hits recorded |
| Match: At3g53920.1 |
score: 199.5 |
e-value: 4.2e-52 |
Identity: 72.39% |
Span: 399bp (98.8%) |
Frame: 3 |
| At3g53920.1 68410.m05512 sigma factor SigC |
| Match: At1g08540.1 |
score: 125.2 |
e-value: 1e-29 |
Identity: 41.04% |
Span: 402bp (99.5%) |
Frame: 3 |
| At1g08540.1 68408.m00853 plastid RNA polymerase sigma-subunit -related similar to GB:BAA22427 and EST gb N65838 |
| Match: At2g36990.1 |
score: 93.97 |
e-value: 2.5e-20 |
Identity: 31.54% |
Span: 390bp (96.5%) |
Frame: 3 |
| At2g36990.1 68409.m04106 RNA polymerase sigma-70 factor -related |
| Match: At5g13730.1 |
score: 90.51 |
e-value: 2.7e-19 |
Identity: 35.29% |
Span: 357bp (88.4%) |
Frame: 3 |
| At5g13730.1 68412.m01474 sigma-related factor (gb|AAC97954.1) |
| Match: At1g64860.1 |
score: 79.72 |
e-value: 4.8e-16 |
Identity: 32.82% |
Span: 393bp (97.3%) |
Frame: 3 |
| At1g64860.1 68408.m06739 plastid RNA polymerase sigma-subunit identical to plastid RNA polymerase sigma-subunit GI:23... |
| Match: At5g24120.1 |
score: 63.93 |
e-value: 2.7e-11 |
Identity: 30.4% |
Span: 366bp (90.6%) |
Frame: 3 |
| At5g24120.1 68412.m02593 sigma-related factor (emb CAA77213.1) |
| Match: At2g38720.1 |
score: 33.88 |
e-value: 0.03 |
Identity: 29.09% |
Span: 165bp (40.8%) |
Frame: 3 |
| At2g38720.1 68409.m04303 microtubule associated protein (MAP65/ASE1) family low similarity to myosin [Schistosoma jap... |
| Match: At1g79620.1 |
score: 32.34 |
e-value: 0.088 |
Identity: 25.35% |
Span: 213bp (52.7%) |
Frame: 3 |
| At1g79620.1 68408.m08515 leucine-rich repeat transmembrane protein kinase, putative similar to receptor protein kinas... |
|
