| genbank/nr [blastx] | Showing best 49 hits recorded |
| Match: gi|38346464|emb|CAD39568.2| |
score: 56.61 |
e-value: 1e-07 |
Identity: 40.26% |
Span: 216bp (88.2%) |
Frame: 3 |
| gi|38346464|emb|CAD39568.2| OSJNBa0019G23.12 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|38345965|emb|CAE04048.2| |
score: 53.91 |
e-value: 6.7e-07 |
Identity: 42.86% |
Span: 180bp (73.5%) |
Frame: 3 |
| gi|38345965|emb|CAE04048.2| OSJNBb0062B06.6 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|29126371|gb|AAO66563.1| |
score: 49.68 |
e-value: 1.3e-05 |
Identity: 42.86% |
Span: 183bp (74.7%) |
Frame: 3 |
| gi|29126371|gb|AAO66563.1| putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] |
| Match: gi|37534230|ref|NP_921417.1| |
score: 49.29 |
e-value: 1.6e-05 |
Identity: 43.55% |
Span: 183bp (74.7%) |
Frame: 3 |
| gi|37534230|ref|NP_921417.1| contains similarity to non-LTR reverse transcriptase [Oryza sativa (japonica cultivar-gr... |
| Match: gi|38346584|emb|CAE04648.2| |
score: 48.14 |
e-value: 3.7e-05 |
Identity: 37.1% |
Span: 183bp (74.7%) |
Frame: 3 |
| gi|38346584|emb|CAE04648.2| OSJNBa0061G20.4 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|21740636|emb|CAD40197.1| |
score: 47.37 |
e-value: 6.2e-05 |
Identity: 41.27% |
Span: 183bp (74.7%) |
Frame: 3 |
| gi|21740636|emb|CAD40197.1| OSJNBb0043H09.5 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|14702030|gb|AAK72280.1| |
score: 46.98 |
e-value: 8.2e-05 |
Identity: 39.34% |
Span: 180bp (73.5%) |
Frame: 3 |
| gi|14702030|gb|AAK72280.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|31044099|dbj|BAC15618.2| |
score: 46.59 |
e-value: 0.00011 |
Identity: 40.32% |
Span: 183bp (74.7%) |
Frame: 3 |
| gi|31044099|dbj|BAC15618.2| unnamed protein product [Oryza sativa (japonica cultivar-group)] |
| Match: gi|34904884|ref|NP_913789.1| |
score: 46.59 |
e-value: 0.00011 |
Identity: 35.06% |
Span: 216bp (88.2%) |
Frame: 3 |
| gi|34904884|ref|NP_913789.1| similar to reverse transcriptase [Oryza sativa (japonica cultivar-group)] gi|24417209|db... |
| Match: gi|37718856|gb|AAR01727.1| |
score: 45.44 |
e-value: 0.00024 |
Identity: 48.78% |
Span: 123bp (50.2%) |
Frame: 3 |
| gi|37718856|gb|AAR01727.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|38346309|emb|CAE04629.2| |
score: 45.05 |
e-value: 0.00031 |
Identity: 33.33% |
Span: 180bp (73.5%) |
Frame: 3 |
| gi|38346309|emb|CAE04629.2| OSJNBa0028I23.11 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|34906774|ref|NP_914734.1| |
score: 44.67 |
e-value: 0.0004 |
Identity: 40% |
Span: 162bp (66.1%) |
Frame: 3 |
| gi|34906774|ref|NP_914734.1| gag-pol polyprotein -like [Oryza sativa (japonica cultivar-group)] |
| Match: gi|15226038|ref|NP_178766.1| |
score: 43.51 |
e-value: 0.001 |
Identity: 32.14% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|15226038|ref|NP_178766.1| reverse transcriptase (RNA-dependent DNA polymerase), putative [Arabidopsis thaliana] gi... |
| Match: gi|15234647|ref|NP_193294.1| |
score: 43.51 |
e-value: 0.001 |
Identity: 33.33% |
Span: 180bp (73.5%) |
Frame: 3 |
| gi|15234647|ref|NP_193294.1| reverse transcriptase (RNA-dependent DNA polymerase) family protein [Arabidopsis thalian... |
| Match: gi|8096424|dbj|BAA95894.1| |
score: 43.13 |
e-value: 0.001 |
Identity: 33.93% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|8096424|dbj|BAA95894.1| Similar to Arabidopsis thaliana chromosome2 BAC F13B15; putative non-LTR retroelement reve... |
| Match: gi|37531298|ref|NP_919951.1| |
score: 42.36 |
e-value: 0.002 |
Identity: 32.14% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|37531298|ref|NP_919951.1| putative retroelement [Oryza sativa (japonica cultivar-group)] gi|22655797|gb|AAN04214.1... |
| Match: gi|22208464|gb|AAM94293.1| |
score: 42.36 |
e-value: 0.002 |
Identity: 37.74% |
Span: 156bp (63.7%) |
Frame: 3 |
| gi|22208464|gb|AAM94293.1| putative reverse transcriptase [Sorghum bicolor] |
| Match: gi|15224610|ref|NP_180666.1| |
score: 42.36 |
e-value: 0.002 |
Identity: 31.67% |
Span: 180bp (73.5%) |
Frame: 3 |
| gi|15224610|ref|NP_180666.1| reverse transcriptase (RNA-dependent DNA polymerase) family protein [Arabidopsis thalian... |
| Match: gi|29124122|gb|AAO65863.1| |
score: 42.36 |
e-value: 0.002 |
Identity: 46.34% |
Span: 123bp (50.2%) |
Frame: 3 |
| gi|29124122|gb|AAO65863.1| putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] |
| Match: gi|34901574|ref|NP_912133.1| |
score: 41.97 |
e-value: 0.003 |
Identity: 44.19% |
Span: 129bp (52.7%) |
Frame: 3 |
| gi|34901574|ref|NP_912133.1| P0571D04.1 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|34902484|ref|NP_912588.1| |
score: 41.97 |
e-value: 0.003 |
Identity: 28.77% |
Span: 204bp (83.3%) |
Frame: 3 |
| gi|34902484|ref|NP_912588.1| Putative non-LTR retroelement reverse transcriptase [Oryza sativa (japonica cultivar-gro... |
| Match: gi|37534700|ref|NP_921652.1| |
score: 41.97 |
e-value: 0.003 |
Identity: 29.73% |
Span: 207bp (84.5%) |
Frame: 3 |
| gi|37534700|ref|NP_921652.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa (japonica cultivar-gro... |
| Match: gi|37530474|ref|NP_919539.1| |
score: 41.59 |
e-value: 0.003 |
Identity: 54.05% |
Span: 111bp (45.3%) |
Frame: 3 |
| gi|37530474|ref|NP_919539.1| putative retroelement [Oryza sativa (japonica cultivar-group)] gi|19920089|gb|AAM08521.1... |
| Match: gi|37534640|ref|NP_921622.1| |
score: 41.2 |
e-value: 0.004 |
Identity: 48.65% |
Span: 111bp (45.3%) |
Frame: 3 |
| gi|37534640|ref|NP_921622.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa (japonica cultivar-gro... |
| Match: gi|22328836|ref|NP_680730.1| |
score: 41.2 |
e-value: 0.004 |
Identity: 31.15% |
Span: 183bp (74.7%) |
Frame: 3 |
| gi|22328836|ref|NP_680730.1| reverse transcriptase (RNA-dependent DNA polymerase) family protein [Arabidopsis thaliana] |
| Match: gi|37535220|ref|NP_921912.1| |
score: 41.2 |
e-value: 0.004 |
Identity: 38% |
Span: 147bp (60.0%) |
Frame: 3 |
| gi|37535220|ref|NP_921912.1| putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] gi|13489171|gb|A... |
| Match: gi|28376701|gb|AAO41131.1| |
score: 41.2 |
e-value: 0.004 |
Identity: 51.43% |
Span: 105bp (42.9%) |
Frame: 3 |
| gi|28376701|gb|AAO41131.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|38347191|emb|CAE02411.2| |
score: 41.2 |
e-value: 0.004 |
Identity: 35.71% |
Span: 159bp (64.9%) |
Frame: 3 |
| OSJNBa0024J22.19 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|32489540|emb|CAE03781.1| |
score: 41.2 |
e-value: 0.004 |
Identity: 39.29% |
Span: 159bp (64.9%) |
Frame: 3 |
| gi|32489540|emb|CAE03781.1| OSJNBa0063G07.5 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|38345754|emb|CAE03482.2| |
score: 40.82 |
e-value: 0.006 |
Identity: 46.34% |
Span: 123bp (50.2%) |
Frame: 3 |
| gi|38345754|emb|CAE03482.2| OSJNBa0065O17.7 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|34906350|ref|NP_914522.1| |
score: 40.82 |
e-value: 0.006 |
Identity: 31.67% |
Span: 180bp (73.5%) |
Frame: 3 |
| gi|34906350|ref|NP_914522.1| unnamed protein product [Oryza sativa (japonica cultivar-group)] gi|9558497|dbj|BAB03416... |
| Match: gi|21741977|emb|CAD41785.1| |
score: 40.43 |
e-value: 0.008 |
Identity: 35.71% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|21741977|emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa (japonica cultivar-group)] gi|38346911|emb|CAE03883.2| OSJN... |
| Match: gi|20042969|gb|AAM08777.1| |
score: 40.05 |
e-value: 0.01 |
Identity: 31.67% |
Span: 180bp (73.5%) |
Frame: 3 |
| gi|20042969|gb|AAM08777.1| Putative retroelement [Oryza sativa] |
| Match: gi|37532946|ref|NP_920775.1| |
score: 40.05 |
e-value: 0.01 |
Identity: 30.36% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|37532946|ref|NP_920775.1| putative retroelement [Oryza sativa (japonica cultivar-group)] gi|31431254|gb|AAP53062.1... |
| Match: gi|37536206|ref|NP_922405.1| |
score: 40.05 |
e-value: 0.01 |
Identity: 30.36% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|37536206|ref|NP_922405.1| putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] gi|27311287|gb|A... |
| Match: gi|37534366|ref|NP_921485.1| |
score: 40.05 |
e-value: 0.01 |
Identity: 31.67% |
Span: 180bp (73.5%) |
Frame: 3 |
| gi|37534366|ref|NP_921485.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa (japonica cultivar-gro... |
| Match: gi|18568269|gb|AAL76001.1| |
score: 39.66 |
e-value: 0.013 |
Identity: 42.59% |
Span: 159bp (64.9%) |
Frame: 3 |
| gi|18568269|gb|AAL76001.1| putative gag-pol polyprotein [Zea mays] |
| Match: gi|18568267|gb|AAL75999.1| |
score: 39.66 |
e-value: 0.013 |
Identity: 35.19% |
Span: 159bp (64.9%) |
Frame: 3 |
| gi|18568267|gb|AAL75999.1| putative polyprotein [Zea mays] |
| Match: gi|37530704|ref|NP_919654.1| |
score: 39.66 |
e-value: 0.013 |
Identity: 33.93% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|37530704|ref|NP_919654.1| putative non-LTR retroelement reverse transcriptase [Oryza sativa (japonica cultivar-gro... |
| Match: gi|15236942|ref|NP_192821.1| |
score: 38.89 |
e-value: 0.022 |
Identity: 31.37% |
Span: 153bp (62.4%) |
Frame: 3 |
| gi|15236942|ref|NP_192821.1| reverse transcriptase (RNA-dependent DNA polymerase), putative [Arabidopsis thaliana] gi... |
| Match: gi|7486711|pir||T01893 |
score: 38.89 |
e-value: 0.022 |
Identity: 31.37% |
Span: 153bp (62.4%) |
Frame: 3 |
| gi|7486711|pir||T01893 hypothetical protein F8M12.22 - Arabidopsis thaliana gi|3513745|gb|AAC33961.1| contains simila... |
| Match: gi|37533138|ref|NP_920871.1| |
score: 38.51 |
e-value: 0.029 |
Identity: 35.56% |
Span: 135bp (55.1%) |
Frame: 3 |
| gi|37533138|ref|NP_920871.1| hypothetical protein [Oryza sativa (japonica cultivar-group)] gi|15187179|gb|AAK91329.1|... |
| Match: gi|22208512|gb|AAM94327.1| |
score: 38.12 |
e-value: 0.038 |
Identity: 38.64% |
Span: 132bp (53.9%) |
Frame: 3 |
| gi|22208512|gb|AAM94327.1| putative reverse transcriptase [Sorghum bicolor] |
| Match: gi|22327414|ref|NP_680357.1| |
score: 38.12 |
e-value: 0.038 |
Identity: 32.08% |
Span: 159bp (64.9%) |
Frame: 3 |
| gi|22327414|ref|NP_680357.1| RNase H domain-containing protein [Arabidopsis thaliana] |
| Match: gi|22331574|ref|NP_683675.1| |
score: 37.35 |
e-value: 0.065 |
Identity: 27.87% |
Span: 183bp (74.7%) |
Frame: 3 |
| gi|22331574|ref|NP_683675.1| reverse transcriptase (RNA-dependent DNA polymerase) family protein [Arabidopsis thaliana] |
| Match: gi|15229461|ref|NP_189068.1| |
score: 36.96 |
e-value: 0.084 |
Identity: 32.14% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|15229461|ref|NP_189068.1| hypothetical protein [Arabidopsis thaliana] |
| Match: gi|22331908|ref|NP_680145.1| |
score: 36.96 |
e-value: 0.084 |
Identity: 32.14% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|22331908|ref|NP_680145.1| non-LTR retroelement reverse transcriptase -related [Arabidopsis thaliana] |
| Match: gi|37532192|ref|NP_920398.1| |
score: 36.96 |
e-value: 0.084 |
Identity: 33.33% |
Span: 168bp (68.6%) |
Frame: 3 |
| gi|37532192|ref|NP_920398.1| putative reverse transcriptase [Oryza sativa (japonica cultivar-group)] gi|20451038|gb|A... |
| Match: gi|15232033|ref|NP_189754.1| |
score: 36.96 |
e-value: 0.084 |
Identity: 31.15% |
Span: 183bp (74.7%) |
Frame: 3 |
| gi|15232033|ref|NP_189754.1| reverse transcriptase (RNA-dependent DNA polymerase) family protein [Arabidopsis thaliana] |
|
| arabidopsis/peptide [blastx] | Showing best 29 hits recorded |
| Match: At2g07650.1 |
score: 43.51 |
e-value: 2.3e-05 |
Identity: 32.14% |
Span: 168bp (68.6%) |
Frame: 3 |
| At2g07650.1 68409.m00790 reverse transcriptase (RNA-dependent DNA polymerase), putative similar to reverse transcript... |
| Match: At4g15590.1 |
score: 43.51 |
e-value: 2.3e-05 |
Identity: 33.33% |
Span: 180bp (73.5%) |
Frame: 3 |
| At4g15590.1 68411.m02160 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At2g31080.1 |
score: 42.36 |
e-value: 5e-05 |
Identity: 31.67% |
Span: 180bp (73.5%) |
Frame: 3 |
| At2g31080.1 68409.m03434 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At4g20725.1 |
score: 41.2 |
e-value: 0.00011 |
Identity: 31.15% |
Span: 183bp (74.7%) |
Frame: 3 |
| At4g20725.1 68411.m02753 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At4g10830.1 |
score: 38.89 |
e-value: 0.00056 |
Identity: 31.37% |
Span: 153bp (62.4%) |
Frame: 3 |
| At4g10830.1 68411.m01596 reverse transcriptase (RNA-dependent DNA polymerase), putative similar to reverse transcript... |
| Match: At5g36905.1 |
score: 38.12 |
e-value: 0.001 |
Identity: 32.08% |
Span: 159bp (64.9%) |
Frame: 3 |
| At5g36905.1 68412.m03970 RNase H domain-containing protein low similarity to reverse transcriptase [Arabidopsis thali... |
| Match: At3g44035.1 |
score: 37.35 |
e-value: 0.002 |
Identity: 27.87% |
Span: 183bp (74.7%) |
Frame: 3 |
| At3g44035.1 68410.m04368 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At3g24255.1 |
score: 36.96 |
e-value: 0.002 |
Identity: 32.14% |
Span: 168bp (68.6%) |
Frame: 3 |
| At3g24255.1 68410.m02779 hypothetical protein similar to putative non-LTR retroelement reverse transcriptase GB:AAC63... |
| Match: At3g62725.1 |
score: 36.96 |
e-value: 0.002 |
Identity: 32.14% |
Span: 168bp (68.6%) |
Frame: 3 |
| At3g62725.1 68410.m06511 non-LTR retroelement reverse transcriptase -related temporary automated functional assignment |
| Match: At3g32110.1 |
score: 36.96 |
e-value: 0.002 |
Identity: 31.15% |
Span: 183bp (74.7%) |
Frame: 3 |
| At3g32110.1 68410.m03769 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At2g25550.1 |
score: 36.19 |
e-value: 0.004 |
Identity: 31.37% |
Span: 153bp (62.4%) |
Frame: 3 |
| At2g25550.1 68409.m02772 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At2g31520.1 |
score: 36.19 |
e-value: 0.004 |
Identity: 31.37% |
Span: 153bp (62.4%) |
Frame: 3 |
| At2g31520.1 68409.m03491 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At4g04000.1 |
score: 35.81 |
e-value: 0.005 |
Identity: 25.42% |
Span: 177bp (72.2%) |
Frame: 3 |
| At4g04000.1 68411.m00505 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At3g45550.1 |
score: 35.81 |
e-value: 0.005 |
Identity: 31.37% |
Span: 153bp (62.4%) |
Frame: 3 |
| At3g45550.1 68410.m04556 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At1g47860.1 |
score: 35.81 |
e-value: 0.005 |
Identity: 29.51% |
Span: 183bp (74.7%) |
Frame: 3 |
| At1g47860.1 68408.m04878 reverse transcriptase-related low similarity to reverse transcriptase [Arabidopsis thaliana]... |
| Match: At2g14430.1 |
score: 35.81 |
e-value: 0.005 |
Identity: 29.51% |
Span: 183bp (74.7%) |
Frame: 3 |
| At2g14430.1 68409.m01461 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At4g12180.1 |
score: 35.04 |
e-value: 0.008 |
Identity: 29.51% |
Span: 183bp (74.7%) |
Frame: 3 |
| At4g12180.1 68411.m01748 reverse transcriptase (RNA-dependent DNA polymerase) family protein low similarity to revers... |
| Match: At2g28980.1 |
score: 35.04 |
e-value: 0.008 |
Identity: 26.23% |
Span: 183bp (74.7%) |
Frame: 3 |
| At2g28980.1 68409.m03191 reverse transcriptase (RNA-dependent DNA polymerase) family protein low similarity to revers... |
| Match: At2g11240.1 |
score: 34.27 |
e-value: 0.014 |
Identity: 26.23% |
Span: 183bp (74.7%) |
Frame: 3 |
| At2g11240.1 68409.m01076 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At2g17610.1 |
score: 34.27 |
e-value: 0.014 |
Identity: 26.32% |
Span: 171bp (69.8%) |
Frame: 3 |
| At2g17610.1 68409.m01834 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At1g43570.1 |
score: 33.11 |
e-value: 0.031 |
Identity: 30.36% |
Span: 168bp (68.6%) |
Frame: 3 |
| At1g43570.1 68408.m04581 hypothetical protein similar to putative non-LTR retroelement reverse transcriptase GI:40068... |
| Match: At2g01550.1 |
score: 33.11 |
e-value: 0.031 |
Identity: 29.51% |
Span: 183bp (74.7%) |
Frame: 3 |
| At2g01550.1 68409.m00065 reverse transcriptase (RNA-dependent DNA polymerase) family protein low similarity to revers... |
| Match: At2g15380.1 |
score: 33.11 |
e-value: 0.031 |
Identity: 35.42% |
Span: 144bp (58.8%) |
Frame: 3 |
| At2g15380.1 68409.m01576 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At1g31030.1 |
score: 31.96 |
e-value: 0.068 |
Identity: 26.67% |
Span: 180bp (73.5%) |
Frame: 3 |
| At1g31030.1 68408.m03439 reverse transcriptase (RNA-dependent DNA polymerase) family protein similar to reverse trans... |
| Match: At5g52065.1 |
score: 31.96 |
e-value: 0.068 |
Identity: 30.36% |
Span: 168bp (68.6%) |
Frame: 3 |
| At5g52065.1 68412.m05839 non-LTR retroelement reverse transcriptase -related temporary automated functional assignment |
| Match: At2g18820.1 |
score: 31.96 |
e-value: 0.068 |
Identity: 26.67% |
Span: 180bp (73.5%) |
Frame: 3 |
| At2g18820.1 68409.m01982 reverse transcriptase (RNA-dependent DNA polymerase) family protein low similarity to revers... |
| Match: At1g51750.1 |
score: 31.96 |
e-value: 0.068 |
Identity: 27.87% |
Span: 183bp (74.7%) |
Frame: 3 |
| At1g51750.1 68408.m05353 reverse transcriptase (RNA-dependent DNA polymerase) family protein low similarity to revers... |
| Match: At2g45230.1 |
score: 31.57 |
e-value: 0.089 |
Identity: 28% |
Span: 150bp (61.2%) |
Frame: 3 |
| At2g45230.1 68409.m05086 reverse transcriptase (RNA-dependent DNA polymerase), putative similar to reverse transcript... |
| Match: At1g31100.1 |
score: 31.57 |
e-value: 0.089 |
Identity: 33.93% |
Span: 168bp (68.6%) |
Frame: 3 |
| At1g31100.1 68408.m03447 reverse transcriptase (RNA-dependent DNA polymerase) family protein low similarity to revers... |
|
