All Stored BLAST annotations for SGN-U562603
genbank/nr [blastx] Showing best 100 hits recorded
Match: gi|18404292|ref|NP_565856.1| score: 502 e-value: 5e-140 Identity: 53.36% Span: 1677bp (73.0%) Frame: 2
SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ...
Match: gi|6273430|emb|CAB60192.1| score: 467 e-value: 2e-129 Identity: 61.6% Span: 1164bp (50.7%) Frame: 2
putative sigma-like transcription factor [Arabidopsis thaliana]
Match: gi|157347545|emb|CAO18182.1| score: 407 e-value: 2e-111 Identity: 71.38% Span: 849bp (37.0%) Frame: 2
unnamed
Match: gi|115475493|ref|NP_001061343.1| score: 373 e-value: 5e-101 Identity: 50.55% Span: 1095bp (47.7%) Frame: 2
Os08g0242800 [Oryza sativa (japonica cultivar-group)] >gi30698490|dbj|BAC76602.1| Sig6 [Oryza sativa Japonica Group] ...
Match: gi|218200736|gb|EEC83163.1| score: 363 e-value: 5e-98 Identity: 47.29% Span: 1149bp (50.0%) Frame: 2
hypothetical protein OsI_28384 [Oryza sativa Indica Group]
Match: gi|125602683|gb|EAZ42008.1| score: 362 e-value: 6e-98 Identity: 48.43% Span: 1095bp (47.7%) Frame: 2
hypothetical protein OsJ_26557 [Oryza sativa Japonica Group]
Match: gi|194696078|gb|ACF82123.1| score: 338 e-value: 1e-90 Identity: 48.5% Span: 1092bp (47.5%) Frame: 2
unknown [Zea mays]
Match: gi|162458769|ref|NP_001105507.1| score: 330 e-value: 3e-88 Identity: 48.23% Span: 1092bp (47.5%) Frame: 2
sigma-like factor6 [Zea mays] >gi4336610|gb|AAD17856.1| sigma factor SIG6 [Zea mays]
Match: gi|168012500|ref|XP_001758940.1| score: 287 e-value: 3e-75 Identity: 40.5% Span: 1086bp (47.3%) Frame: 2
plastid sigma facor SIG2 [Physcomitrella patens subsp. patens] >gi12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella pat...
Match: gi|148909485|gb|ABR17840.1| score: 273 e-value: 5e-71 Identity: 40.77% Span: 1080bp (47.0%) Frame: 2
unknown [Picea sitchensis]
Match: gi|148907004|gb|ABR16646.1| score: 273 e-value: 5e-71 Identity: 40.77% Span: 1080bp (47.0%) Frame: 2
unknown [Picea sitchensis]
Match: gi|85813983|emb|CAD20831.2| score: 269 e-value: 7e-70 Identity: 38.13% Span: 1122bp (48.8%) Frame: 2
sigma factor [Spinacia oleracea]
Match: gi|168009564|ref|XP_001757475.1| score: 267 e-value: 3e-69 Identity: 39.23% Span: 1077bp (46.9%) Frame: 2
predicted protein [Physcomitrella patens subsp. patens] >gi162691169|gb|EDQ77532.1| predicted protein [Physcomitrella...
Match: gi|26452898|dbj|BAC43527.1| score: 261 e-value: 3e-67 Identity: 37.5% Span: 1101bp (47.9%) Frame: 2
putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana]
Match: gi|15223259|ref|NP_172330.1| score: 258 e-value: 1e-66 Identity: 37.23% Span: 1101bp (47.9%) Frame: 2
SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ...
Match: gi|168009782|ref|XP_001757584.1| score: 256 e-value: 8e-66 Identity: 37.1% Span: 1035bp (45.1%) Frame: 2
predicted protein [Physcomitrella patens subsp. patens] >gi162691278|gb|EDQ77641.1| predicted protein [Physcomitrella...
Match: gi|7363218|emb|CAB83106.1| score: 253 e-value: 4e-65 Identity: 36.44% Span: 1092bp (47.5%) Frame: 2
sigma factor 2 [Sinapis alba]
Match: gi|2353173|gb|AAB69385.1| score: 252 e-value: 1e-64 Identity: 36.76% Span: 1101bp (47.9%) Frame: 2
sigma factor 2 [Arabidopsis thaliana]
Match: gi|119512308|ref|ZP_01631394.1| score: 247 e-value: 3e-63 Identity: 39.2% Span: 963bp (41.9%) Frame: 2
RNA polymerase sigma factor [Nodularia spumigena CCY9414] >gi119463021|gb|EAW43972.1| RNA polymerase sigma factor [No...
Match: gi|123965795|ref|YP_001010876.1| score: 246 e-value: 7e-63 Identity: 36.86% Span: 1104bp (48.1%) Frame: 2
Putative
Match: gi|113478384|ref|YP_724445.1| score: 246 e-value: 7e-63 Identity: 40.13% Span: 897bp (39.1%) Frame: 2
RNA
Match: gi|209523577|ref|ZP_03272131.1| score: 245 e-value: 1e-62 Identity: 36.94% Span: 975bp (42.4%) Frame: 2
RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima CS-328] >gi209495982|gb|EDZ96283.1| RNA polymerase,...
Match: gi|86606677|ref|YP_475440.1| score: 244 e-value: 3e-62 Identity: 42.37% Span: 942bp (41.0%) Frame: 2
RNA
Match: gi|78212231|ref|YP_381010.1| score: 244 e-value: 3e-62 Identity: 36.34% Span: 1074bp (46.8%) Frame: 2
gi|78212231|ref|YP_381010.1| Sigma-70 factor [Synechococcus sp. CC9605] >gi|78196690|gb|ABB34455.1| Sigma-70 factor [...
Match: gi|1588486|prf||2208419B score: 244 e-value: 2e-62 Identity: 40.67% Span: 897bp (39.1%) Frame: 2
RNA polymerase sigma factor
Match: gi|170078618|ref|YP_001735256.1| score: 244 e-value: 2e-62 Identity: 40.67% Span: 897bp (39.1%) Frame: 2
RNA polymerase sigma factor [Synechococcus sp. PCC 7002] >gi558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] >...
Match: gi|17232755|ref|NP_489303.1| score: 243 e-value: 6e-62 Identity: 37.61% Span: 972bp (42.3%) Frame: 2
RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120] >gi75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD ...
Match: gi|33861053|ref|NP_892614.1| score: 243 e-value: 6e-62 Identity: 35.85% Span: 1089bp (47.4%) Frame: 2
gi|33861053|ref|NP_892614.1| Putative principal RNA polymerase sigma factor [Prochlorococcus marinus subsp. pastoris ...
Match: gi|186686393|ref|YP_001869589.1| score: 243 e-value: 4e-62 Identity: 38.27% Span: 963bp (41.9%) Frame: 2
RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102] >gi8118663|gb|AAF73062.1|AF265349_1 primary vegetativ...
Match: gi|218245044|ref|YP_002370415.1| score: 243 e-value: 7e-62 Identity: 39.67% Span: 897bp (39.1%) Frame: 2
RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 8801] >gi257058068|ref|YP_003135956.1| RNA polym...
Match: gi|116075287|ref|ZP_01472547.1| score: 243 e-value: 4e-62 Identity: 37.72% Span: 1023bp (44.5%) Frame: 2
RNA
Match: gi|196244885|ref|ZP_03143610.1| score: 243 e-value: 7e-62 Identity: 39.67% Span: 897bp (39.1%) Frame: 2
RNA
Match: gi|196177205|gb|EDX72213.1| score: 242 e-value: 9e-62 Identity: 40.33% Span: 897bp (39.1%) Frame: 2
RNA
Match: gi|78185245|ref|YP_377680.1| score: 242 e-value: 1e-61 Identity: 37.54% Span: 1023bp (44.5%) Frame: 2
gi|78185245|ref|YP_377680.1| Sigma-70 factor [Synechococcus sp. CC9902] >gi|78169539|gb|ABB26636.1| Sigma-70 factor [...
Match: gi|196192415|gb|EDX87379.1| score: 242 e-value: 1e-61 Identity: 38.8% Span: 897bp (39.1%) Frame: 2
RNA
Match: gi|87123878|ref|ZP_01079728.1| score: 242 e-value: 1e-61 Identity: 39.94% Span: 921bp (40.1%) Frame: 2
Sigma-70
Match: gi|88807657|ref|ZP_01123169.1| score: 241 e-value: 3e-61 Identity: 37.8% Span: 984bp (42.8%) Frame: 2
RNA
Match: gi|119489756|ref|ZP_01622514.1| score: 241 e-value: 3e-61 Identity: 35.36% Span: 1086bp (47.3%) Frame: 2
RNA
Match: gi|78778882|ref|YP_396994.1| score: 241 e-value: 2e-61 Identity: 39.81% Span: 939bp (40.9%) Frame: 2
Sigma-70
Match: gi|157412913|ref|YP_001483779.1| score: 241 e-value: 2e-61 Identity: 39.81% Span: 939bp (40.9%) Frame: 2
Putative
Match: gi|116072877|ref|ZP_01470142.1| score: 241 e-value: 2e-61 Identity: 39.94% Span: 921bp (40.1%) Frame: 2
RNA
Match: gi|218438948|ref|YP_002377277.1| score: 241 e-value: 2e-61 Identity: 36.57% Span: 1080bp (47.0%) Frame: 2
RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 7424] >gi218171676|gb|ACK70409.1| RNA polymerase...
Match: gi|113954073|ref|YP_731235.1| score: 241 e-value: 2e-61 Identity: 37.98% Span: 987bp (43.0%) Frame: 2
RNA
Match: gi|123968088|ref|YP_001008946.1| score: 241 e-value: 2e-61 Identity: 39.81% Span: 939bp (40.9%) Frame: 2
Putative
Match: gi|126695861|ref|YP_001090747.1| score: 241 e-value: 3e-61 Identity: 39.81% Span: 939bp (40.9%) Frame: 2
Putative
Match: gi|33866315|ref|NP_897874.1| score: 241 e-value: 2e-61 Identity: 39.94% Span: 921bp (40.1%) Frame: 2
gi|33866315|ref|NP_897874.1| Putative principal RNA polymerase sigma factor [Synechococcus sp. WH 8102] gi|33639290|e...
Match: gi|81299460|ref|YP_399668.1| score: 240 e-value: 5e-61 Identity: 40% Span: 897bp (39.1%) Frame: 2
Sigma-70
Match: gi|86610159|ref|YP_478921.1| score: 240 e-value: 4e-61 Identity: 41.43% Span: 942bp (41.0%) Frame: 2
RNA
Match: gi|37523331|ref|NP_926708.1| score: 240 e-value: 5e-61 Identity: 39.72% Span: 1038bp (45.2%) Frame: 2
gi|37523331|ref|NP_926708.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35214335|dbj|BAC91703.1| g...
Match: gi|168000881|ref|XP_001753144.1| score: 240 e-value: 4e-61 Identity: 37.69% Span: 936bp (40.7%) Frame: 2
predicted
Match: gi|217140|dbj|BAA01749.1| score: 240 e-value: 5e-61 Identity: 40% Span: 897bp (39.1%) Frame: 2
gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus sp.]
Match: gi|56750888|ref|YP_171589.1| score: 240 e-value: 5e-61 Identity: 40% Span: 897bp (39.1%) Frame: 2
gi|56750888|ref|YP_171589.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus elongatus PCC 6301] >gi|56685...
Match: gi|148238947|ref|YP_001224334.1| score: 239 e-value: 8e-61 Identity: 37.5% Span: 984bp (42.8%) Frame: 2
RNA
Match: gi|197625355|gb|EDY37914.1| score: 239 e-value: 8e-61 Identity: 39.29% Span: 921bp (40.1%) Frame: 2
DNA-directed
Match: gi|33239946|ref|NP_874888.1| score: 238 e-value: 1e-60 Identity: 37.31% Span: 960bp (41.8%) Frame: 2
gi|33239946|ref|NP_874888.1| DNA-directed RNA polymerase sigma subunit (sigma70/sigma32) [Prochlorococcus marinus sub...
Match: gi|33863540|ref|NP_895100.1| score: 238 e-value: 2e-60 Identity: 38.11% Span: 921bp (40.1%) Frame: 2
gi|33863540|ref|NP_895100.1| Putative principal RNA polymerase sigma factor [Prochlorococcus marinus str. MIT 9313] g...
Match: gi|72383665|ref|YP_293020.1| score: 238 e-value: 2e-60 Identity: 39.61% Span: 921bp (40.1%) Frame: 2
gi|72383665|ref|YP_293020.1| sigma-70 factor [Prochlorococcus marinus str. NATL2A] >gi|72003515|gb|AAZ59317.1| sigma-...
Match: gi|162605994|ref|XP_001713512.1| score: 238 e-value: 1e-60 Identity: 40.07% Span: 903bp (39.3%) Frame: 2
RNA-polymerase
Match: gi|196254343|ref|ZP_03152882.1| score: 238 e-value: 1e-60 Identity: 39.33% Span: 897bp (39.1%) Frame: 2
RNA polymerase, sigma 70 subunit, RpoD family [Cyanothece sp. PCC 7822] >gi196203540|gb|EDX98356.1| RNA polymerase, s...
Match: gi|159903037|ref|YP_001550381.1| score: 238 e-value: 2e-60 Identity: 38.11% Span: 921bp (40.1%) Frame: 2
Putative
Match: gi|124025264|ref|YP_001014380.1| score: 238 e-value: 2e-60 Identity: 39.61% Span: 921bp (40.1%) Frame: 2
Putative
Match: gi|124022438|ref|YP_001016745.1| score: 238 e-value: 2e-60 Identity: 35.63% Span: 1014bp (44.1%) Frame: 2
Putative
Match: gi|148241988|ref|YP_001227145.1| score: 237 e-value: 3e-60 Identity: 38.96% Span: 921bp (40.1%) Frame: 2
RNA
Match: gi|194477302|ref|YP_002049481.1| score: 236 e-value: 9e-60 Identity: 36.11% Span: 1041bp (45.3%) Frame: 2
RNA
Match: gi|196242349|ref|ZP_03141103.1| score: 236 e-value: 7e-60 Identity: 38.8% Span: 897bp (39.1%) Frame: 2
RNA
Match: gi|87302644|ref|ZP_01085461.1| score: 236 e-value: 7e-60 Identity: 39.29% Span: 921bp (40.1%) Frame: 2
RNA
Match: gi|19910022|dbj|BAB87262.1| score: 235 e-value: 2e-59 Identity: 39.4% Span: 903bp (39.3%) Frame: 2
gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta]
Match: gi|158334991|ref|YP_001516163.1| score: 234 e-value: 3e-59 Identity: 38.46% Span: 897bp (39.1%) Frame: 2
RNA
Match: gi|196254691|ref|ZP_03153230.1| score: 234 e-value: 3e-59 Identity: 41.67% Span: 900bp (39.2%) Frame: 2
RNA
Match: gi|160331013|ref|XP_001712214.1| score: 234 e-value: 3e-59 Identity: 37.69% Span: 960bp (41.8%) Frame: 2
rpoD
Match: gi|186683480|ref|YP_001866676.1| score: 233 e-value: 6e-59 Identity: 40.79% Span: 912bp (39.7%) Frame: 2
RNA
Match: gi|186681941|ref|YP_001865137.1| score: 232 e-value: 1e-58 Identity: 38.72% Span: 984bp (42.8%) Frame: 2
RNA
Match: gi|218440063|ref|YP_002378392.1| score: 232 e-value: 1e-58 Identity: 37.61% Span: 975bp (42.4%) Frame: 2
RNA
Match: gi|218439771|ref|YP_002378100.1| score: 231 e-value: 2e-58 Identity: 41.33% Span: 900bp (39.2%) Frame: 2
RNA
Match: gi|119492598|ref|ZP_01623816.1| score: 231 e-value: 3e-58 Identity: 38.2% Span: 966bp (42.1%) Frame: 2
RNA
Match: gi|196243917|ref|ZP_03142645.1| score: 231 e-value: 3e-58 Identity: 37.99% Span: 924bp (40.2%) Frame: 2
RNA
Match: gi|218441429|ref|YP_002379758.1| score: 231 e-value: 2e-58 Identity: 40.33% Span: 900bp (39.2%) Frame: 2
RNA
Match: gi|196255644|ref|ZP_03154182.1| score: 230 e-value: 5e-58 Identity: 36.7% Span: 975bp (42.4%) Frame: 2
RNA
Match: gi|166364164|ref|YP_001656437.1| score: 229 e-value: 1e-57 Identity: 41% Span: 900bp (39.2%) Frame: 2
group
Match: gi|145347899|ref|XP_001418397.1| score: 229 e-value: 1e-57 Identity: 38.34% Span: 930bp (40.5%) Frame: 2
predicted
Match: gi|159027100|emb|CAO89285.1| score: 228 e-value: 2e-57 Identity: 41% Span: 900bp (39.2%) Frame: 2
rpoD
Match: gi|22298160|ref|NP_681407.1| score: 227 e-value: 3e-57 Identity: 37.38% Span: 945bp (41.1%) Frame: 2
gi|22298160|ref|NP_681407.1| principal RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22294339|d...
Match: gi|166368031|ref|YP_001660304.1| score: 227 e-value: 3e-57 Identity: 39.58% Span: 858bp (37.4%) Frame: 2
group
Match: gi|209527735|ref|ZP_03276230.1| score: 226 e-value: 5e-57 Identity: 39.33% Span: 900bp (39.2%) Frame: 2
RNA
Match: gi|67924587|ref|ZP_00518002.1| score: 226 e-value: 7e-57 Identity: 38.98% Span: 939bp (40.9%) Frame: 2
Sigma-70
Match: gi|218247332|ref|YP_002372703.1| score: 226 e-value: 5e-57 Identity: 38.98% Span: 939bp (40.9%) Frame: 2
RNA
Match: gi|170078438|ref|YP_001735076.1| score: 225 e-value: 1e-56 Identity: 38.24% Span: 918bp (40.0%) Frame: 2
sigma
Match: gi|196244562|ref|ZP_03143288.1| score: 225 e-value: 2e-56 Identity: 38.66% Span: 939bp (40.9%) Frame: 2
RNA
Match: gi|113474616|ref|YP_720677.1| score: 225 e-value: 1e-56 Identity: 40.46% Span: 912bp (39.7%) Frame: 2
RNA
Match: gi|170077819|ref|YP_001734457.1| score: 224 e-value: 3e-56 Identity: 41% Span: 900bp (39.2%) Frame: 2
sigma-70
Match: gi|1769596|gb|AAB39997.1| score: 224 e-value: 3e-56 Identity: 38.24% Span: 918bp (40.0%) Frame: 2
gi|1769596|gb|AAB39997.1| sigma factor [Synechococcus sp.]
Match: gi|16331222|ref|NP_441950.1| score: 224 e-value: 2e-56 Identity: 40.33% Span: 900bp (39.2%) Frame: 2
gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434780|pir||S76042 transcri...
Match: gi|186680839|ref|YP_001864035.1| score: 224 e-value: 2e-56 Identity: 39.72% Span: 858bp (37.4%) Frame: 2
RNA
Match: gi|115452175|ref|NP_001049688.1| score: 224 e-value: 3e-56 Identity: 34.54% Span: 1152bp (50.2%) Frame: 2
Os03g0271100 [Oryza sativa (japonica cultivar-group)] >gi29893614|gb|AAP06868.1| unknown protein [Oryza sativa Japoni...
Match: gi|169883528|gb|ACA97859.1| score: 224 e-value: 3e-56 Identity: 39.24% Span: 858bp (37.4%) Frame: 2
RNA
Match: gi|126661338|ref|ZP_01732404.1| score: 224 e-value: 3e-56 Identity: 38.34% Span: 939bp (40.9%) Frame: 2
RNA
Match: gi|116058189|emb|CAL53378.1| score: 224 e-value: 2e-56 Identity: 38.02% Span: 930bp (40.5%) Frame: 2
SigA
Match: gi|125585746|gb|EAZ26410.1| score: 224 e-value: 3e-56 Identity: 34.54% Span: 1152bp (50.2%) Frame: 2
hypothetical protein OsJ_10293 [Oryza sativa Japonica Group]
Match: gi|86607034|ref|YP_475797.1| score: 224 e-value: 3e-56 Identity: 36.39% Span: 900bp (39.2%) Frame: 2
RNA
Match: gi|159029420|emb|CAO90796.1| score: 223 e-value: 5e-56 Identity: 39.24% Span: 858bp (37.4%) Frame: 2
unnamed

150 lower scoring hits censored -- only 100 best hits are stored.
arabidopsis/peptide [blastx] Showing best 6 hits recorded
Match: At2G36990.1 score: 502 e-value: 3e-142 Identity: 53.36% Span: 1677bp (73.0%) Frame: 2
Symbols: SIG6, SIGF | SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcriptio...
Match: At1G08540.1 score: 258 e-value: 8e-69 Identity: 37.23% Span: 1101bp (47.9%) Frame: 2
Symbols: SIGA, SIG2, SIGB | SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor |...
Match: At5G13730.1 score: 175 e-value: 9e-44 Identity: 31.58% Span: 1131bp (49.2%) Frame: 2
Symbols: SIGD, SIG4 | SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor | chr5:...
Match: At3G53920.1 score: 171 e-value: 2e-42 Identity: 27.76% Span: 1110bp (48.3%) Frame: 2
Symbols: SIG3, SIGC | SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcriptio...
Match: At1G64860.1 score: 149 e-value: 6e-36 Identity: 30.25% Span: 954bp (41.5%) Frame: 2
Symbols: SIG1, SIG2, SIGB, RPOD1, SIGA | SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ transcrip...
Match: At5G24120.1 score: 132 e-value: 9e-31 Identity: 28.14% Span: 993bp (43.2%) Frame: 2
Symbols: SIG5, SIGE | SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor...

swissprot [blastx] Showing best 100 hits recorded
Match: P26683 score: 243 e-value: 3e-63 Identity: 37.61% Span: 972bp (42.3%) Frame: 2
RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1
Match: P38023 score: 240 e-value: 3e-62 Identity: 40% Span: 897bp (39.1%) Frame: 2
RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1
Match: P52322 score: 223 e-value: 4e-57 Identity: 38.57% Span: 876bp (38.1%) Frame: 2
RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1
Match: P74565 score: 220 e-value: 2e-56 Identity: 33.87% Span: 975bp (42.4%) Frame: 2
RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1
Match: Q03066 score: 216 e-value: 6e-55 Identity: 43.3% Span: 783bp (34.1%) Frame: 2
RNA polymerase sigma-C factor OS=Anabaena sp. (strain PCC 7120) GN=sigC PE=3 SV=2
Match: Q03065 score: 207 e-value: 3e-52 Identity: 36.04% Span: 999bp (43.5%) Frame: 2
RNA polymerase sigma-B factor OS=Anabaena sp. (strain PCC 7120) GN=sigB PE=3 SV=1
Match: P77994 score: 206 e-value: 4e-52 Identity: 30.83% Span: 1107bp (48.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Thermotoga maritima GN=rpoD PE=1 SV=3
Match: P33118 score: 206 e-value: 5e-52 Identity: 34.8% Span: 1026bp (44.7%) Frame: 2
RNA polymerase sigma factor sigB OS=Corynebacterium diphtheriae GN=sigB PE=3 SV=2
Match: Q59996 score: 199 e-value: 8e-50 Identity: 39.85% Span: 780bp (34.0%) Frame: 2
Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain PCC 6803) GN=sigC PE=3 SV=1
Match: P18182 score: 199 e-value: 6e-50 Identity: 32.76% Span: 1032bp (44.9%) Frame: 2
RNA polymerase principal sigma factor hrdA OS=Streptomyces coelicolor GN=hrdA PE=3 SV=2
Match: P27785 score: 195 e-value: 1e-48 Identity: 34.55% Span: 894bp (38.9%) Frame: 2
RNA polymerase sigma factor rpoD OS=Streptomyces aureofaciens GN=rpoD PE=3 SV=1
Match: P52329 score: 195 e-value: 1e-48 Identity: 33.66% Span: 909bp (39.6%) Frame: 2
RNA polymerase sigma factor rpoD OS=Enterococcus faecalis GN=rpoD PE=3 SV=2
Match: P33656 score: 194 e-value: 2e-48 Identity: 32.31% Span: 975bp (42.4%) Frame: 2
RNA polymerase sigma factor rpoD OS=Clostridium acetobutylicum GN=rpoD PE=3 SV=1
Match: Q9Z7F0 score: 194 e-value: 2e-48 Identity: 34.4% Span: 846bp (36.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Chlamydia pneumoniae GN=rpoD PE=3 SV=1
Match: P77951 score: 191 e-value: 2e-47 Identity: 33.33% Span: 936bp (40.7%) Frame: 2
RNA polymerase principal sigma factor hrdB OS=Streptomyces griseus GN=hrdB PE=1 SV=1
Match: P18183 score: 191 e-value: 1e-47 Identity: 33.33% Span: 936bp (40.7%) Frame: 2
RNA polymerase principal sigma factor hrdB OS=Streptomyces coelicolor GN=hrdB PE=3 SV=2
Match: P06224 score: 191 e-value: 2e-47 Identity: 30.83% Span: 1077bp (46.9%) Frame: 2
RNA polymerase sigma factor rpoD OS=Bacillus subtilis GN=sigA PE=1 SV=2
Match: P52328 score: 191 e-value: 1e-47 Identity: 37.55% Span: 708bp (30.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Bacillus sp. GN=sigA PE=3 SV=1
Match: P0A602 score: 190 e-value: 3e-47 Identity: 32.3% Span: 966bp (42.1%) Frame: 2
RNA polymerase sigma factor rpoD OS=Mycobacterium tuberculosis GN=rpoD PE=3 SV=1
Match: P0A603 score: 190 e-value: 3e-47 Identity: 32.3% Span: 966bp (42.1%) Frame: 2
RNA polymerase sigma factor rpoD OS=Mycobacterium bovis GN=rpoD PE=3 SV=1
Match: O66381 score: 190 e-value: 3e-47 Identity: 31.6% Span: 978bp (42.6%) Frame: 2
RNA polymerase sigma factor rpoD OS=Bacillus halodurans GN=sigA PE=3 SV=2
Match: P56835 score: 189 e-value: 6e-47 Identity: 33.7% Span: 810bp (35.3%) Frame: 2
RNA polymerase sigma factor rpoD OS=Chlamydia muridarum GN=rpoD PE=3 SV=1
Match: P0A4J0 score: 188 e-value: 1e-46 Identity: 33.77% Span: 915bp (39.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1
Match: P0A4I9 score: 188 e-value: 1e-46 Identity: 33.77% Span: 915bp (39.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1
Match: P18333 score: 188 e-value: 1e-46 Identity: 34.92% Span: 756bp (32.9%) Frame: 2
RNA polymerase sigma factor rpoD OS=Chlamydia trachomatis GN=rpoD PE=3 SV=2
Match: Q6G905 score: 187 e-value: 3e-46 Identity: 30.77% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MSSA476) GN=rpoD PE=3 SV=1
Match: O33662 score: 187 e-value: 3e-46 Identity: 31.1% Span: 1119bp (48.7%) Frame: 2
RNA polymerase sigma factor rpoD OS=Streptococcus mutans GN=rpoD PE=3 SV=1
Match: Q6GGD8 score: 187 e-value: 3e-46 Identity: 30.77% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MRSA252) GN=rpoD PE=3 SV=1
Match: P0A0J0 score: 187 e-value: 3e-46 Identity: 30.77% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain NCTC 8325) GN=rpoD PE=3 SV=1
Match: Q5HFJ9 score: 187 e-value: 3e-46 Identity: 30.77% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain COL) GN=rpoD PE=3 SV=1
Match: P0A0I8 score: 187 e-value: 3e-46 Identity: 30.77% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1
Match: P0A0I9 score: 187 e-value: 3e-46 Identity: 30.77% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MW2) GN=rpoD PE=3 SV=1
Match: Q99TT5 score: 186 e-value: 4e-46 Identity: 30.77% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain N315) GN=rpoD PE=1 SV=1
Match: P61540 score: 186 e-value: 5e-46 Identity: 32.99% Span: 861bp (37.5%) Frame: 2
RNA polymerase sigma factor rpoD OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rpoD ...
Match: P59117 score: 186 e-value: 5e-46 Identity: 32.99% Span: 861bp (37.5%) Frame: 2
RNA polymerase sigma factor rpoD OS=Leptospira interrogans GN=rpoD PE=3 SV=1
Match: Q8CP24 score: 185 e-value: 9e-46 Identity: 30.47% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpoD PE=3 SV=1
Match: Q5HNY7 score: 185 e-value: 9e-46 Identity: 30.47% Span: 993bp (43.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1
Match: O83506 score: 184 e-value: 2e-45 Identity: 36.25% Span: 720bp (31.3%) Frame: 2
RNA polymerase sigma factor rpoD OS=Treponema pallidum GN=rpoD PE=3 SV=1
Match: Q8P4H2 score: 184 e-value: 3e-45 Identity: 30.99% Span: 1029bp (44.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Xanthomonas campestris pv. campestris GN=rpoD
Match: Q8PG33 score: 184 e-value: 3e-45 Identity: 30.99% Span: 1029bp (44.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Xanthomonas axonopodis pv. citri GN=rpoD
Match: P52331 score: 183 e-value: 3e-45 Identity: 32.9% Span: 921bp (40.1%) Frame: 2
RNA polymerase sigma factor rpoD OS=Listeria monocytogenes GN=rpoD PE=3 SV=1
Match: Q92BQ6 score: 183 e-value: 3e-45 Identity: 32.9% Span: 921bp (40.1%) Frame: 2
RNA polymerase sigma factor rpoD OS=Listeria innocua GN=rpoD PE=3 SV=1
Match: P18249 score: 182 e-value: 6e-45 Identity: 34.58% Span: 963bp (41.9%) Frame: 2
RNA polymerase principal sigma factor hrdD OS=Streptomyces coelicolor GN=hrdD
Match: Q59914 score: 182 e-value: 6e-45 Identity: 36.86% Span: 765bp (33.3%) Frame: 2
RNA polymerase principal sigma factor hrdD OS=Streptomyces griseus GN=hrdD
Match: P0A2E3 score: 182 e-value: 1e-44 Identity: 32.04% Span: 894bp (38.9%) Frame: 2
RNA polymerase sigma factor rpoD OS=Salmonella typhimurium GN=rpoD PE=3 SV=1
Match: P0A2E4 score: 182 e-value: 1e-44 Identity: 32.04% Span: 894bp (38.9%) Frame: 2
RNA polymerase sigma factor rpoD OS=Salmonella typhi GN=rpoD PE=3 SV=1
Match: P33452 score: 181 e-value: 2e-44 Identity: 33.22% Span: 885bp (38.5%) Frame: 2
RNA polymerase sigma factor rpoD OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2
Match: P00579 score: 181 e-value: 2e-44 Identity: 31.72% Span: 894bp (38.9%) Frame: 2
RNA polymerase sigma factor rpoD OS=Escherichia coli (strain K12) GN=rpoD PE=1 SV=2
Match: P32001 score: 181 e-value: 2e-44 Identity: 31.66% Span: 933bp (40.6%) Frame: 2
RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpoD PE=3 SV=1
Match: Q59753 score: 180 e-value: 3e-44 Identity: 33.95% Span: 813bp (35.4%) Frame: 2
RNA polymerase sigma factor rpoD OS=Rhizobium meliloti GN=rpoD PE=3 SV=1
Match: Q9PDM9 score: 180 e-value: 3e-44 Identity: 30.72% Span: 936bp (40.7%) Frame: 2
RNA polymerase sigma factor rpoD OS=Xylella fastidiosa GN=rpoD
Match: Q87DT7 score: 179 e-value: 8e-44 Identity: 30.41% Span: 936bp (40.7%) Frame: 2
RNA polymerase sigma factor rpoD OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpoD
Match: P17531 score: 179 e-value: 6e-44 Identity: 36.89% Span: 675bp (29.4%) Frame: 2
RNA polymerase sigma factor rpoD OS=Myxococcus xanthus GN=rpoD PE=3 SV=1
Match: Q60012 score: 179 e-value: 8e-44 Identity: 34.41% Span: 927bp (40.4%) Frame: 2
RNA polymerase principal sigma factor hrdD OS=Streptomyces viridifaciens GN=hrdD
Match: P46400 score: 178 e-value: 1e-43 Identity: 29.71% Span: 936bp (40.7%) Frame: 2
RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus GN=rpoD PE=2 SV=1
Match: P52326 score: 177 e-value: 2e-43 Identity: 30.93% Span: 873bp (38.0%) Frame: 2
RNA polymerase sigma factor rpoD OS=Pseudomonas fluorescens GN=rpoD PE=3 SV=1
Match: Q89B10 score: 177 e-value: 3e-43 Identity: 32.43% Span: 888bp (38.7%) Frame: 2
RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpoD PE=3 SV=1
Match: P52324 score: 176 e-value: 7e-43 Identity: 35.27% Span: 720bp (31.3%) Frame: 2
RNA polymerase sigma factor rpoD OS=Caulobacter crescentus GN=rpoD PE=3 SV=1
Match: P26480 score: 176 e-value: 5e-43 Identity: 31.16% Span: 828bp (36.0%) Frame: 2
RNA polymerase sigma factor rpoD OS=Pseudomonas aeruginosa GN=rpoD PE=3 SV=1
Match: P58290 score: 176 e-value: 4e-43 Identity: 35.56% Span: 675bp (29.4%) Frame: 2
RNA polymerase sigma factor rpoD (Fragment) OS=Lactococcus lactis subsp. cremoris GN=rpoD
Match: Q04506 score: 176 e-value: 5e-43 Identity: 35.56% Span: 675bp (29.4%) Frame: 2
RNA polymerase sigma factor rpoD OS=Lactococcus lactis subsp. lactis GN=rpoD
Match: O24744 score: 176 e-value: 5e-43 Identity: 34.58% Span: 720bp (31.3%) Frame: 2
RNA polymerase sigma factor rpoD OS=Shewanella violacea GN=rpoD PE=3 SV=1
Match: P43766 score: 176 e-value: 4e-43 Identity: 31.67% Span: 900bp (39.2%) Frame: 2
RNA polymerase sigma factor rpoD OS=Haemophilus influenzae GN=rpoD PE=3 SV=1
Match: P52327 score: 176 e-value: 5e-43 Identity: 32.32% Span: 789bp (34.3%) Frame: 2
RNA polymerase sigma factor rpoD OS=Pseudomonas putida GN=rpoD
Match: P57163 score: 175 e-value: 1e-42 Identity: 32.06% Span: 846bp (36.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpoD PE=3 SV=1
Match: P52323 score: 175 e-value: 1e-42 Identity: 32.89% Span: 867bp (37.7%) Frame: 2
RNA polymerase sigma factor rpoD OS=Borrelia burgdorferi GN=rpoD PE=3 SV=2
Match: Q83BB6 score: 173 e-value: 3e-42 Identity: 32.12% Span: 903bp (39.3%) Frame: 2
RNA polymerase sigma factor rpoD OS=Coxiella burnetii GN=rpoD
Match: P18184 score: 172 e-value: 8e-42 Identity: 32.81% Span: 957bp (41.7%) Frame: 2
RNA polymerase principal sigma factor hrdC OS=Streptomyces coelicolor GN=hrdC PE=3 SV=1
Match: P52325 score: 170 e-value: 3e-41 Identity: 30.8% Span: 828bp (36.0%) Frame: 2
RNA polymerase sigma factor rpoD OS=Neisseria gonorrhoeae GN=rpoD
Match: P33451 score: 167 e-value: 2e-40 Identity: 34.6% Span: 708bp (30.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Rickettsia prowazekii GN=rpoD
Match: Q68VQ5 score: 167 e-value: 2e-40 Identity: 34.6% Span: 708bp (30.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Rickettsia typhi GN=rpoD
Match: Q1RKH7 score: 167 e-value: 2e-40 Identity: 34.18% Span: 708bp (30.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Rickettsia bellii (strain RML369-C) GN=rpoD
Match: Q92FZ8 score: 167 e-value: 2e-40 Identity: 34.6% Span: 708bp (30.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Rickettsia conorii GN=rpoD
Match: Q9ZMY3 score: 167 e-value: 3e-40 Identity: 31.14% Span: 852bp (37.1%) Frame: 2
RNA polymerase sigma factor rpoD OS=Helicobacter pylori J99 GN=rpoD PE=3 SV=1
Match: P55993 score: 167 e-value: 2e-40 Identity: 31.14% Span: 852bp (37.1%) Frame: 2
RNA polymerase sigma factor rpoD OS=Helicobacter pylori GN=rpoD PE=3 SV=1
Match: Q4UJT1 score: 167 e-value: 2e-40 Identity: 34.6% Span: 708bp (30.8%) Frame: 2
RNA polymerase sigma factor rpoD OS=Rickettsia felis GN=rpoD
Match: P45684 score: 165 e-value: 1e-39 Identity: 37.6% Span: 726bp (31.6%) Frame: 2
RNA polymerase sigma factor rpoS OS=Pseudomonas aeruginosa GN=rpoS
Match: O51804 score: 163 e-value: 5e-39 Identity: 36.59% Span: 720bp (31.3%) Frame: 2
RNA polymerase sigma factor rpoS OS=Vibrio cholerae GN=rpoS
Match: P35540 score: 156 e-value: 6e-37 Identity: 35.74% Span: 705bp (30.7%) Frame: 2
RNA polymerase sigma factor rpoS OS=Shigella flexneri GN=rpoS PE=3 SV=3
Match: P0A2E5 score: 156 e-value: 6e-37 Identity: 35.74% Span: 705bp (30.7%) Frame: 2
RNA polymerase sigma factor rpoS OS=Salmonella typhimurium GN=rpoS PE=3 SV=1
Match: P0A2E6 score: 156 e-value: 6e-37 Identity: 35.74% Span: 705bp (30.7%) Frame: 2
RNA polymerase sigma factor rpoS OS=Salmonella typhi GN=rpoS PE=3 SV=1
Match: P13445 score: 156 e-value: 6e-37 Identity: 35.74% Span: 705bp (30.7%) Frame: 2
RNA polymerase sigma factor rpoS OS=Escherichia coli (strain K12) GN=rpoS
Match: P0A2E7 score: 156 e-value: 6e-37 Identity: 35.74% Span: 705bp (30.7%) Frame: 2
RNA polymerase sigma factor rpoS OS=Salmonella dublin GN=rpoS PE=3 SV=1
Match: Q9KI19 score: 155 e-value: 1e-36 Identity: 28.98% Span: 1041bp (45.3%) Frame: 2
RNA polymerase sigma factor rpoS OS=Coxiella burnetii GN=rpoS PE=1 SV=1
Match: P47765 score: 154 e-value: 2e-36 Identity: 35.62% Span: 699bp (30.4%) Frame: 2
RNA polymerase sigma factor rpoS OS=Yersinia enterocolitica GN=rpoS PE=3 SV=1
Match: P43344 score: 150 e-value: 3e-35 Identity: 33.64% Span: 642bp (27.9%) Frame: 2
RNA polymerase sigma factor rpoD (Fragment) OS=Serratia marcescens GN=rpoD PE=3 SV=1
Match: P47491 score: 144 e-value: 2e-33 Identity: 32.63% Span: 687bp (29.9%) Frame: 2
RNA polymerase sigma factor rpoD OS=Mycoplasma genitalium GN=rpoD
Match: P78022 score: 143 e-value: 4e-33 Identity: 32.51% Span: 705bp (30.7%) Frame: 2
RNA polymerase sigma factor rpoD OS=Mycoplasma pneumoniae GN=rpoD
Match: Q07083 score: 114 e-value: 2e-24 Identity: 32.39% Span: 711bp (31.0%) Frame: 2
RNA polymerase sigma-C factor OS=Myxococcus xanthus GN=sigC
Match: P50507 score: 108 e-value: 2e-22 Identity: 28.97% Span: 711bp (31.0%) Frame: 2
RNA polymerase sigma-32 factor OS=Agrobacterium tumefaciens GN=rpoH
Match: P48194 score: 106 e-value: 7e-22 Identity: 29.46% Span: 681bp (29.6%) Frame: 2
RNA polymerase sigma-32 factor OS=Caulobacter crescentus GN=rpoH
Match: P19433 score: 105 e-value: 1e-21 Identity: 30.47% Span: 672bp (29.3%) Frame: 2
RNA polymerase sigma-B factor OS=Myxococcus xanthus GN=sigB
Match: Q01624 score: 105 e-value: 1e-21 Identity: 29.3% Span: 741bp (32.3%) Frame: 2
RNA polymerase sigma-B factor OS=Stigmatella aurantiaca GN=sigB
Match: P50512 score: 100 e-value: 4e-20 Identity: 29.66% Span: 669bp (29.1%) Frame: 2
RNA polymerase sigma-32 factor OS=Zymomonas mobilis GN=rpoH
Match: P19940 score: 97.8 e-value: 2e-19 Identity: 28.79% Span: 747bp (32.5%) Frame: 2
RNA polymerase sigma-G factor OS=Bacillus subtilis GN=sigG
Match: P44404 score: 94.4 e-value: 3e-18 Identity: 29.1% Span: 681bp (29.6%) Frame: 2
RNA polymerase sigma-32 factor OS=Haemophilus influenzae GN=rpoH
Match: P50510 score: 93.2 e-value: 6e-18 Identity: 28.51% Span: 669bp (29.1%) Frame: 2
RNA polymerase sigma-32 factor OS=Serratia marcescens GN=rpoH
Match: P26764 score: 92 e-value: 1e-17 Identity: 27.39% Span: 717bp (31.2%) Frame: 2
RNA polymerase sigma-F factor OS=Bacillus licheniformis GN=sigF
Match: P0AGB3 score: 91.7 e-value: 2e-17 Identity: 28.87% Span: 663bp (28.9%) Frame: 2
RNA polymerase sigma-32 factor OS=Escherichia coli (strain K12) GN=rpoH
Match: P0AGB4 score: 91.7 e-value: 2e-17 Identity: 28.87% Span: 663bp (28.9%) Frame: 2
RNA polymerase sigma-32 factor OS=Escherichia coli O6 GN=rpoH

20 lower scoring hits censored -- only 100 best hits are stored.