| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|42568351|ref|NP_568663.2| |
score: 576.2 |
e-value: 8e-163 |
Identity: 51.7% |
Span: 1731bp (81.0%) |
Frame: 2 |
| 16S rRNA processing protein RimM family [Arabidopsis thaliana] >gi10177579|dbj|BAB10810.1| unnamed protein product [A... |
| Match: gi|15292693|gb|AAK92715.1| |
score: 286.6 |
e-value: 1.3e-75 |
Identity: 44.38% |
Span: 1062bp (49.7%) |
Frame: 2 |
| unknown protein [Arabidopsis thaliana] >gi20465803|gb|AAM20390.1| unknown protein [Arabidopsis thaliana] |
| Match: gi|33864216|ref|NP_895776.1| |
score: 130.6 |
e-value: 1.2e-28 |
Identity: 40.43% |
Span: 564bp (26.4%) |
Frame: 2 |
| 16S rRNA-processing protein [Prochlorococcus marinus str. MIT 9313] >gi33635800|emb|CAE22125.1| possible 16S rRNA pro... |
| Match: gi|48474357|sp|Q7V4K0|RIMM_PROMM |
score: 130.6 |
e-value: 1.2e-28 |
Identity: 40.43% |
Span: 564bp (26.4%) |
Frame: 2 |
| gi|48474357|sp|Q7V4K0|RIMM_PROMM Probable 16S rRNA processing protein rimM |
| Match: gi|33864685|ref|NP_896244.1| |
score: 129.4 |
e-value: 2.6e-28 |
Identity: 41.3% |
Span: 552bp (25.8%) |
Frame: 2 |
| 16S rRNA-processing protein [Synechococcus sp. WH 8102] >gi46397680|sp|Q7U9V4.1|RIMM_SYNPX RecName: Full=Ribosome mat... |
| Match: gi|23125796|ref|ZP_00107714.1| |
score: 128.3 |
e-value: 5.9e-28 |
Identity: 40.21% |
Span: 567bp (26.5%) |
Frame: 2 |
| gi|23125796|ref|ZP_00107714.1| COG0806: RimM protein, required for 16S rRNA processing [Nostoc punctiforme] |
| Match: gi|17230304|ref|NP_486852.1| |
score: 124.4 |
e-value: 8.5e-27 |
Identity: 40.96% |
Span: 564bp (26.4%) |
Frame: 2 |
| gi|17230304|ref|NP_486852.1| probable 16S rRNA processing protein [Nostoc sp. PCC 7120] gi|21362862|sp|Q8YTB1|RIMM_AN... |
| Match: gi|45524541|ref|ZP_00175819.1| |
score: 120.6 |
e-value: 1.2e-25 |
Identity: 36.17% |
Span: 564bp (26.4%) |
Frame: 2 |
| gi|45524541|ref|ZP_00175819.1| COG0806: RimM protein, required for 16S rRNA processing [Crocosphaera watsonii WH 8501] |
| Match: gi|45513683|ref|ZP_00165249.1| |
score: 119 |
e-value: 3.6e-25 |
Identity: 41.85% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|45513683|ref|ZP_00165249.1| COG0806: RimM protein, required for 16S rRNA processing [Synechococcus elongatus PCC 7... |
| Match: gi|33241213|ref|NP_876155.1| |
score: 118.2 |
e-value: 6.1e-25 |
Identity: 38.62% |
Span: 567bp (26.5%) |
Frame: 2 |
| gi|33241213|ref|NP_876155.1| RimM protein, required for 16S rRNA processing [Prochlorococcus marinus subsp. marinus s... |
| Match: gi|22298609|ref|NP_681856.1| |
score: 117.1 |
e-value: 1.4e-24 |
Identity: 41.21% |
Span: 546bp (25.5%) |
Frame: 2 |
| gi|22298609|ref|NP_681856.1| 16S rRNA processing protein RimM homolog~ORF_ID:tlr1065 [Thermosynechococcus elongatus B... |
| Match: gi|48894807|ref|ZP_00327916.1| |
score: 115.2 |
e-value: 5.2e-24 |
Identity: 35.41% |
Span: 564bp (26.4%) |
Frame: 2 |
| gi|48894807|ref|ZP_00327916.1| COG0806: RimM protein, required for 16S rRNA processing [Trichodesmium erythraeum IMS1... |
| Match: gi|33862161|ref|NP_893722.1| |
score: 114 |
e-value: 1.1e-23 |
Identity: 36.56% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|33862161|ref|NP_893722.1| possible 16S rRNA processing protein RimM [Prochlorococcus marinus subsp. pastoris str. ... |
| Match: gi|16330702|ref|NP_441430.1| |
score: 111.3 |
e-value: 7.4e-23 |
Identity: 39.57% |
Span: 561bp (26.3%) |
Frame: 2 |
| gi|16330702|ref|NP_441430.1| unknown protein [Synechocystis sp. PCC 6803] gi|3914654|sp|P74035|RIMM_SYNY3 Probable 16... |
| Match: gi|37521074|ref|NP_924451.1| |
score: 107.5 |
e-value: 1.1e-21 |
Identity: 35.29% |
Span: 561bp (26.3%) |
Frame: 2 |
| gi|37521074|ref|NP_924451.1| probable 16S rRNA processing protein [Gloeobacter violaceus] gi|35212070|dbj|BAC89446.1|... |
| Match: gi|42519386|ref|NP_965316.1| |
score: 100.9 |
e-value: 1e-19 |
Identity: 31.75% |
Span: 567bp (26.5%) |
Frame: 2 |
| gi|42519386|ref|NP_965316.1| 16S rRNA processing protein RimM [Lactobacillus johnsonii NCC 533] >gi|41583674|gb|AAS09... |
| Match: gi|25028513|ref|NP_738567.1| |
score: 87.81 |
e-value: 8.8e-16 |
Identity: 35.29% |
Span: 561bp (26.3%) |
Frame: 2 |
| gi|25028513|ref|NP_738567.1| putative 16S rRNA processing protein [Corynebacterium efficiens YS-314] gi|23493798|dbj|... |
| Match: gi|49241531|emb|CAG40217.1| |
score: 86.66 |
e-value: 2e-15 |
Identity: 31.02% |
Span: 558bp (26.1%) |
Frame: 2 |
| gi|49241531|emb|CAG40217.1| 16S rRNA processing protein [Staphylococcus aureus subsp. aureus MRSA252] |
| Match: gi|15924229|ref|NP_371763.1| |
score: 86.66 |
e-value: 2e-15 |
Identity: 31.55% |
Span: 558bp (26.1%) |
Frame: 2 |
| gi|15924229|ref|NP_371763.1| probable 16S rRNA processing protein [Staphylococcus aureus subsp. aureus Mu50] gi|15926... |
| Match: gi|38234108|ref|NP_939875.1| |
score: 85.5 |
e-value: 4.4e-15 |
Identity: 34.24% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|38234108|ref|NP_939875.1| Putative 16s rRNA processing protein [Corynebacterium diphtheriae] gi|38200370|emb|CAE50... |
| Match: gi|27467832|ref|NP_764469.1| |
score: 82.42 |
e-value: 3.7e-14 |
Identity: 32.09% |
Span: 558bp (26.1%) |
Frame: 2 |
| gi|27467832|ref|NP_764469.1| rimM protein [Staphylococcus epidermidis ATCC 12228] gi|33301521|sp|Q8CPH7|RIMM_STAEP Pr... |
| Match: gi|15615043|ref|NP_243346.1| |
score: 80.11 |
e-value: 1.8e-13 |
Identity: 31.38% |
Span: 561bp (26.3%) |
Frame: 2 |
| gi|15615043|ref|NP_243346.1| 16S rRNA processing protein [Bacillus halodurans] gi|14423895|sp|Q9KA14|RIMM_BACHD Proba... |
| Match: gi|19553253|ref|NP_601255.1| |
score: 80.11 |
e-value: 1.8e-13 |
Identity: 31.05% |
Span: 561bp (26.3%) |
Frame: 2 |
| gi|19553253|ref|NP_601255.1| RimM protein [Corynebacterium glutamicum ATCC 13032] gi|24418639|sp|Q8NNX5|RIMM_CORGL Pr... |
| Match: gi|48865299|ref|ZP_00319161.1| |
score: 80.11 |
e-value: 1.8e-13 |
Identity: 25.14% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|48865299|ref|ZP_00319161.1| COG0806: RimM protein, required for 16S rRNA processing [Oenococcus oeni PSU-1] |
| Match: gi|16078665|ref|NP_389484.1| |
score: 77.41 |
e-value: 1.2e-12 |
Identity: 29.51% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|16078665|ref|NP_389484.1| similar to hypothetical proteins [Bacillus subtilis] gi|3914642|sp|O31740|RIMM_BACSU Pro... |
| Match: gi|15900672|ref|NP_345276.1| |
score: 75.87 |
e-value: 3.5e-12 |
Identity: 29.03% |
Span: 555bp (26.0%) |
Frame: 2 |
| gi|15900672|ref|NP_345276.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae TIGR4] gi|21362870|sp|Q97RM5|... |
| Match: gi|15902730|ref|NP_358280.1| |
score: 75.48 |
e-value: 4.5e-12 |
Identity: 29.03% |
Span: 555bp (26.0%) |
Frame: 2 |
| gi|15902730|ref|NP_358280.1| 16S rRNA processing protein RimM [Streptococcus pneumoniae R6] gi|32171636|sp|Q8DQG3|RIM... |
| Match: gi|23464908|ref|NP_695511.1| |
score: 74.71 |
e-value: 7.7e-12 |
Identity: 32.28% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|23464908|ref|NP_695511.1| possible Rim-like protein involved in efficient processing of 16S rRNA [Bifidobacterium ... |
| Match: gi|48474469|sp|Q8G7F9|RIMM_BIFLO |
score: 74.71 |
e-value: 7.7e-12 |
Identity: 32.28% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|48474469|sp|Q8G7F9|RIMM_BIFLO Probable 16S rRNA processing protein rimM |
| Match: gi|23335825|ref|ZP_00121057.1| |
score: 74.71 |
e-value: 7.7e-12 |
Identity: 32.28% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|23335825|ref|ZP_00121057.1| COG0806: RimM protein, required for 16S rRNA processing [Bifidobacterium longum DJO10A] |
| Match: gi|15673547|ref|NP_267721.1| |
score: 73.94 |
e-value: 1.3e-11 |
Identity: 26.49% |
Span: 555bp (26.0%) |
Frame: 2 |
| gi|15673547|ref|NP_267721.1| 16S rRNA processing protein [Lactococcus lactis subsp. lactis] gi|13878679|sp|Q9CFB6|RIM... |
| Match: gi|45916747|ref|ZP_00197621.1| |
score: 72.4 |
e-value: 3.8e-11 |
Identity: 34.64% |
Span: 534bp (25.0%) |
Frame: 2 |
| gi|45916747|ref|ZP_00197621.1| COG0806: RimM protein, required for 16S rRNA processing [Mesorhizobium sp. BNC1] |
| Match: gi|33301480|sp|Q819W5|RIMM_BACCR |
score: 70.86 |
e-value: 1.1e-10 |
Identity: 26.78% |
Span: 546bp (25.5%) |
Frame: 2 |
| gi|33301480|sp|Q819W5|RIMM_BACCR Probable 16S rRNA processing protein rimM |
| Match: gi|30021930|ref|NP_833561.1| |
score: 70.86 |
e-value: 1.1e-10 |
Identity: 26.78% |
Span: 546bp (25.5%) |
Frame: 2 |
| gi|30021930|ref|NP_833561.1| 16S rRNA processing protein rimM [Bacillus cereus ATCC 14579] gi|29897486|gb|AAP10762.1|... |
| Match: gi|15674881|ref|NP_269055.1| |
score: 70.48 |
e-value: 1.5e-10 |
Identity: 28.49% |
Span: 555bp (26.0%) |
Frame: 2 |
| gi|15674881|ref|NP_269055.1| putative 16S rRNA processing protein [Streptococcus pyogenes] gi|14423885|sp|P58183|RIMM... |
| Match: gi|22537502|ref|NP_688353.1| |
score: 70.48 |
e-value: 1.5e-10 |
Identity: 28.49% |
Span: 555bp (26.0%) |
Frame: 2 |
| gi|22537502|ref|NP_688353.1| 16S rRNA processing protein RimM [Streptococcus agalactiae 2603V/R] gi|25011467|ref|NP_7... |
| Match: gi|49237074|ref|ZP_00331129.1| |
score: 70.48 |
e-value: 1.5e-10 |
Identity: 29.41% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|49237074|ref|ZP_00331129.1| COG0806: RimM protein, required for 16S rRNA processing [Moorella thermoacetica ATCC 3... |
| Match: gi|48836423|ref|ZP_00293419.1| |
score: 70.09 |
e-value: 1.9e-10 |
Identity: 30.89% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|48836423|ref|ZP_00293419.1| COG0806: RimM protein, required for 16S rRNA processing [Thermobifida fusca] |
| Match: gi|29829184|ref|NP_823818.1| |
score: 70.09 |
e-value: 1.9e-10 |
Identity: 30.43% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|29829184|ref|NP_823818.1| putative 16S rRNA processing protein [Streptomyces avermitilis MA-4680] gi|29606290|dbj|... |
| Match: gi|5738538|emb|CAB52820.1| |
score: 69.71 |
e-value: 2.5e-10 |
Identity: 38.24% |
Span: 306bp (14.3%) |
Frame: 2 |
| gi|5738538|emb|CAB52820.1| hypothetical protein [Prochlorococcus marinus] |
| Match: gi|21401826|ref|NP_657811.1| |
score: 69.32 |
e-value: 3.2e-10 |
Identity: 26.78% |
Span: 546bp (25.5%) |
Frame: 2 |
| gi|21401826|ref|NP_657811.1| RimM, RimM [Bacillus anthracis A2012] |
| Match: gi|16800973|ref|NP_471241.1| |
score: 69.32 |
e-value: 3.2e-10 |
Identity: 27.72% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|16800973|ref|NP_471241.1| similar to putative 16S rRNA processing protein RimM [Listeria innocua] gi|21362865|sp|Q... |
| Match: gi|30263845|ref|NP_846222.1| |
score: 68.94 |
e-value: 4.2e-10 |
Identity: 25.82% |
Span: 546bp (25.5%) |
Frame: 2 |
| gi|30263845|ref|NP_846222.1| 16S rRNA processing protein RimM [Bacillus anthracis str. Ames] gi|33301488|sp|Q81WJ5|RI... |
| Match: gi|42782934|ref|NP_980181.1| |
score: 68.55 |
e-value: 5.5e-10 |
Identity: 25.82% |
Span: 546bp (25.5%) |
Frame: 2 |
| gi|42782934|ref|NP_980181.1| 16S rRNA processing protein RimM [Bacillus cereus ATCC 10987] >gi|49186692|ref|YP_029944... |
| Match: gi|16803833|ref|NP_465318.1| |
score: 68.55 |
e-value: 5.5e-10 |
Identity: 27.72% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|16803833|ref|NP_465318.1| similar to putative 16S rRNA processing protein RimM [Listeria monocytogenes EGD-e] gi|2... |
| Match: gi|46908025|ref|YP_014414.1| |
score: 68.55 |
e-value: 5.5e-10 |
Identity: 27.72% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|46908025|ref|YP_014414.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 4b F2365] >gi|47094472|ref... |
| Match: gi|47097598|ref|ZP_00235125.1| |
score: 68.55 |
e-value: 5.5e-10 |
Identity: 27.72% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|47097598|ref|ZP_00235125.1| 16S rRNA processing protein RimM [Listeria monocytogenes str. 1/2a F6854] >gi|47014029... |
| Match: gi|19745922|ref|NP_607058.1| |
score: 68.17 |
e-value: 7.2e-10 |
Identity: 27.96% |
Span: 555bp (26.0%) |
Frame: 2 |
| gi|19745922|ref|NP_607058.1| putative 16S rRNA processing protein RIMM [Streptococcus pyogenes MGAS8232] gi|24418642|... |
| Match: gi|21910109|ref|NP_664377.1| |
score: 68.17 |
e-value: 7.2e-10 |
Identity: 27.96% |
Span: 555bp (26.0%) |
Frame: 2 |
| gi|21910109|ref|NP_664377.1| putative 16S rRNA processing protein [Streptococcus pyogenes MGAS315] gi|28896193|ref|NP... |
| Match: gi|47216641|emb|CAG04839.1| |
score: 68.17 |
e-value: 7.2e-10 |
Identity: 23.43% |
Span: 657bp (30.7%) |
Frame: 2 |
| gi|47216641|emb|CAG04839.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|20807906|ref|NP_623077.1| |
score: 67.4 |
e-value: 1.2e-09 |
Identity: 28.65% |
Span: 555bp (26.0%) |
Frame: 2 |
| gi|20807906|ref|NP_623077.1| RimM protein, required for 16S rRNA processing [Thermoanaerobacter tengcongensis] gi|220... |
| Match: gi|26988196|ref|NP_743621.1| |
score: 66.63 |
e-value: 2.1e-09 |
Identity: 29.78% |
Span: 534bp (25.0%) |
Frame: 2 |
| gi|26988196|ref|NP_743621.1| 16S rRNA processing protein RimM [Pseudomonas putida KT2440] gi|37999637|sp|Q88MV5|RIMM_... |
| Match: gi|21223948|ref|NP_629727.1| |
score: 66.24 |
e-value: 2.7e-09 |
Identity: 31.46% |
Span: 531bp (24.8%) |
Frame: 2 |
| gi|21223948|ref|NP_629727.1| putative 16S rRNA processing protein [Streptomyces coelicolor A3(2)] gi|14423884|sp|O698... |
| Match: gi|29376428|ref|NP_815582.1| |
score: 65.85 |
e-value: 3.6e-09 |
Identity: 27.66% |
Span: 561bp (26.3%) |
Frame: 2 |
| gi|29376428|ref|NP_815582.1| 16S rRNA processing protein RimM [Enterococcus faecalis V583] gi|29343892|gb|AAO81652.1|... |
| Match: gi|15598939|ref|NP_252433.1| |
score: 65.47 |
e-value: 4.7e-09 |
Identity: 30.9% |
Span: 534bp (25.0%) |
Frame: 2 |
| gi|15598939|ref|NP_252433.1| 16S rRNA processing protein [Pseudomonas aeruginosa PA01] gi|14423891|sp|Q9HXQ0|RIMM_PSE... |
| Match: gi|15610044|ref|NP_217423.1| |
score: 64.31 |
e-value: 1e-08 |
Identity: 32.98% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|15610044|ref|NP_217423.1| rimM [Mycobacterium tuberculosis H37Rv] gi|15842450|ref|NP_337487.1| 16S rRNA processing... |
| Match: gi|39933320|ref|NP_945596.1| |
score: 63.54 |
e-value: 1.8e-08 |
Identity: 27.33% |
Span: 516bp (24.1%) |
Frame: 2 |
| gi|39933320|ref|NP_945596.1| putative 16S rRNA processing protein. [Rhodopseudomonas palustris CGA009] >gi|39652945|e... |
| Match: gi|48771055|ref|ZP_00275398.1| |
score: 63.54 |
e-value: 1.8e-08 |
Identity: 27.13% |
Span: 534bp (25.0%) |
Frame: 2 |
| gi|48771055|ref|ZP_00275398.1| COG0806: RimM protein, required for 16S rRNA processing [Ralstonia metallidurans CH34] |
| Match: gi|41409073|ref|NP_961909.1| |
score: 62.77 |
e-value: 3e-08 |
Identity: 29.73% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|41409073|ref|NP_961909.1| RimM [Mycobacterium avium subsp. paratuberculosis str. k10] >gi|41397432|gb|AAS05292.1| ... |
| Match: gi|46164432|ref|ZP_00137138.2| |
score: 62.77 |
e-value: 3e-08 |
Identity: 30.34% |
Span: 534bp (25.0%) |
Frame: 2 |
| gi|46164432|ref|ZP_00137138.2| COG0806: RimM protein, required for 16S rRNA processing [Pseudomonas aeruginosa UCBPP-... |
| Match: gi|28572462|ref|NP_789242.1| |
score: 62.77 |
e-value: 3e-08 |
Identity: 28.64% |
Span: 558bp (26.1%) |
Frame: 2 |
| gi|28572462|ref|NP_789242.1| probable 16s rRNA processing protein RimM [Tropheryma whipplei TW08/27] gi|28410594|emb|... |
| Match: gi|28493426|ref|NP_787587.1| |
score: 62.77 |
e-value: 3e-08 |
Identity: 28.64% |
Span: 558bp (26.1%) |
Frame: 2 |
| gi|28493426|ref|NP_787587.1| 16S rRNA processing protein [Tropheryma whipplei str. Twist] gi|28476467|gb|AAO44556.1| ... |
| Match: gi|16127881|ref|NP_422445.1| |
score: 62.77 |
e-value: 3e-08 |
Identity: 30.34% |
Span: 534bp (25.0%) |
Frame: 2 |
| gi|16127881|ref|NP_422445.1| 16S rRNA processing protein RimM [Caulobacter crescentus CB15] gi|21362873|sp|Q9A2B4|RIM... |
| Match: gi|46579250|ref|YP_010058.1| |
score: 62.77 |
e-value: 3e-08 |
Identity: 28.19% |
Span: 564bp (26.4%) |
Frame: 2 |
| gi|46579250|ref|YP_010058.1| 16S rRNA processing protein RimM [Desulfovibrio vulgaris subsp. vulgaris str. Hildenboro... |
| Match: gi|46201627|ref|ZP_00208181.1| |
score: 62 |
e-value: 5.2e-08 |
Identity: 28.88% |
Span: 543bp (25.4%) |
Frame: 2 |
| gi|46201627|ref|ZP_00208181.1| COG0806: RimM protein, required for 16S rRNA processing [Magnetospirillum magnetotacti... |
| Match: gi|23098990|ref|NP_692456.1| |
score: 62 |
e-value: 5.2e-08 |
Identity: 26.23% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|23098990|ref|NP_692456.1| 16S rRNA processing protein [Oceanobacillus iheyensis HTE831] gi|33301526|sp|Q8EQZ8|RIMM... |
| Match: gi|28210936|ref|NP_781880.1| |
score: 61.23 |
e-value: 8.8e-08 |
Identity: 30.6% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|28210936|ref|NP_781880.1| 16S rRNA processing protein rimM [Clostridium tetani E88] gi|28203375|gb|AAO35817.1| 16S... |
| Match: gi|13473626|ref|NP_105194.1| |
score: 61.23 |
e-value: 8.8e-08 |
Identity: 30.89% |
Span: 558bp (26.1%) |
Frame: 2 |
| gi|13473626|ref|NP_105194.1| putative 16S rRNA processing protein [Mesorhizobium loti] gi|21362871|sp|Q98EE0|RIMM_RHI... |
| Match: gi|15827851|ref|NP_302114.1| |
score: 60.85 |
e-value: 1.2e-07 |
Identity: 30.27% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|15827851|ref|NP_302114.1| 16S rRNA processing protein [Mycobacterium leprae] gi|3914643|sp|O33016|RIMM_MYCLE Proba... |
| Match: gi|24379321|ref|NP_721276.1| |
score: 60.46 |
e-value: 1.5e-07 |
Identity: 26.84% |
Span: 567bp (26.5%) |
Frame: 2 |
| gi|24379321|ref|NP_721276.1| putative 16S rRNA processing protein [Streptococcus mutans UA159] gi|24377244|gb|AAN5858... |
| Match: gi|23024813|ref|ZP_00064007.1| |
score: 60.08 |
e-value: 2e-07 |
Identity: 22.99% |
Span: 561bp (26.3%) |
Frame: 2 |
| gi|23024813|ref|ZP_00064007.1| COG0806: RimM protein, required for 16S rRNA processing [Leuconostoc mesenteroides sub... |
| Match: gi|42761316|dbj|BAD11559.1| |
score: 60.08 |
e-value: 2e-07 |
Identity: 25.37% |
Span: 570bp (26.7%) |
Frame: 2 |
| gi|42761316|dbj|BAD11559.1| putative UDP-N-acetylglucosamine pyrophosphorylase [Oryza sativa (japonica cultivar-group... |
| Match: gi|46103066|ref|ZP_00198095.1| |
score: 59.69 |
e-value: 2.6e-07 |
Identity: 28% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|46103066|ref|ZP_00198095.1| COG0806: RimM protein, required for 16S rRNA processing [Kineococcus radiotolerans SRS... |
| Match: gi|22959104|ref|ZP_00006762.1| |
score: 59.69 |
e-value: 2.6e-07 |
Identity: 33.61% |
Span: 354bp (16.6%) |
Frame: 2 |
| gi|22959104|ref|ZP_00006762.1| COG0806: RimM protein, required for 16S rRNA processing [Rhodobacter sphaeroides] |
| Match: gi|23475086|ref|ZP_00130376.1| |
score: 59.31 |
e-value: 3.4e-07 |
Identity: 28.72% |
Span: 564bp (26.4%) |
Frame: 2 |
| gi|23475086|ref|ZP_00130376.1| COG0806: RimM protein, required for 16S rRNA processing [Desulfovibrio desulfuricans G20] |
| Match: gi|23470448|ref|ZP_00125781.1| |
score: 58.92 |
e-value: 4.4e-07 |
Identity: 28.57% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|23470448|ref|ZP_00125781.1| COG0806: RimM protein, required for 16S rRNA processing [Pseudomonas syringae pv. syri... |
| Match: gi|28378336|ref|NP_785228.1| |
score: 58.54 |
e-value: 5.7e-07 |
Identity: 24.74% |
Span: 561bp (26.3%) |
Frame: 2 |
| gi|28378336|ref|NP_785228.1| 16S rRNA processing protein [Lactobacillus plantarum WCFS1] gi|38258523|sp|Q88WJ3|RIMM_L... |
| Match: gi|28868681|ref|NP_791300.1| |
score: 58.54 |
e-value: 5.7e-07 |
Identity: 29.14% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|28868681|ref|NP_791300.1| 16S rRNA processing protein RimM [Pseudomonas syringae pv. tomato str. DC3000] gi|379995... |
| Match: gi|48853455|ref|ZP_00307625.1| |
score: 58.15 |
e-value: 7.5e-07 |
Identity: 24.1% |
Span: 567bp (26.5%) |
Frame: 2 |
| gi|48853455|ref|ZP_00307625.1| COG0806: RimM protein, required for 16S rRNA processing [Cytophaga hutchinsonii] |
| Match: gi|21465177|gb|AAM54702.1| |
score: 58.15 |
e-value: 7.5e-07 |
Identity: 25% |
Span: 564bp (26.4%) |
Frame: 2 |
| gi|21465177|gb|AAM54702.1| UDP-N-acetylglucosamine pyrophosphorylase [Giardia intestinalis] gi|28396137|gb|AAO39051.1... |
| Match: gi|48732641|ref|ZP_00266384.1| |
score: 57.77 |
e-value: 9.8e-07 |
Identity: 28.09% |
Span: 534bp (25.0%) |
Frame: 2 |
| gi|48732641|ref|ZP_00266384.1| COG0806: RimM protein, required for 16S rRNA processing [Pseudomonas fluorescens PfO-1] |
| Match: gi|27375594|ref|NP_767123.1| |
score: 57.38 |
e-value: 1.3e-06 |
Identity: 24.29% |
Span: 531bp (24.8%) |
Frame: 2 |
| gi|27375594|ref|NP_767123.1| 16S rRNA processing protein [Bradyrhizobium japonicum] gi|27348731|dbj|BAC45748.1| 16S r... |
| Match: gi|48765005|ref|ZP_00269556.1| |
score: 57.38 |
e-value: 1.3e-06 |
Identity: 29.73% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|48765005|ref|ZP_00269556.1| COG0806: RimM protein, required for 16S rRNA processing [Rhodospirillum rubrum] |
| Match: gi|17986432|ref|NP_539066.1| |
score: 57.38 |
e-value: 1.3e-06 |
Identity: 28.02% |
Span: 540bp (25.3%) |
Frame: 2 |
| gi|17986432|ref|NP_539066.1| 16S ribosomal RNA processing protein Rimm [Brucella melitensis] gi|23502765|ref|NP_69889... |
| Match: gi|23105146|ref|ZP_00091604.1| |
score: 57 |
e-value: 1.7e-06 |
Identity: 31.43% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|23105146|ref|ZP_00091604.1| COG0806: RimM protein, required for 16S rRNA processing [Azotobacter vinelandii] |
| Match: gi|15604216|ref|NP_220731.1| |
score: 56.22 |
e-value: 2.8e-06 |
Identity: 28.47% |
Span: 408bp (19.1%) |
Frame: 2 |
| gi|15604216|ref|NP_220731.1| unknown [Rickettsia prowazekii] gi|14423906|sp|Q9ZDI0|RIMM_RICPR Probable 16S rRNA proce... |
| Match: gi|45516818|ref|ZP_00168370.1| |
score: 55.84 |
e-value: 3.7e-06 |
Identity: 25.4% |
Span: 534bp (25.0%) |
Frame: 2 |
| gi|45516818|ref|ZP_00168370.1| COG0806: RimM protein, required for 16S rRNA processing [Ralstonia eutropha JMP134] |
| Match: gi|42521077|ref|NP_966992.1| |
score: 55.84 |
e-value: 3.7e-06 |
Identity: 27.22% |
Span: 537bp (25.1%) |
Frame: 2 |
| gi|42521077|ref|NP_966992.1| 16S rRNA processing protein RimM [Wolbachia endosymbiont of Drosophila melanogaster] >gi... |
| Match: gi|23113893|ref|ZP_00099230.1| |
score: 55.84 |
e-value: 3.7e-06 |
Identity: 26.63% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|23113893|ref|ZP_00099230.1| COG0806: RimM protein, required for 16S rRNA processing [Desulfitobacterium hafniense] |
| Match: gi|17936575|ref|NP_533365.1| |
score: 55.45 |
e-value: 4.9e-06 |
Identity: 31.07% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|17936575|ref|NP_533365.1| 16S rRNA processing protein [Agrobacterium tumefaciens str. C58 (U. Washington)] gi|2536... |
| Match: gi|15889954|ref|NP_355635.1| |
score: 55.45 |
e-value: 4.9e-06 |
Identity: 31.07% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|15889954|ref|NP_355635.1| AGR_C_4896p [Agrobacterium tumefaciens] gi|22001903|sp|Q8UBZ8|RIMM_AGRT5 Probable 16S rR... |
| Match: gi|34580601|ref|ZP_00142081.1| |
score: 55.07 |
e-value: 6.3e-06 |
Identity: 28.89% |
Span: 402bp (18.8%) |
Frame: 2 |
| gi|34580601|ref|ZP_00142081.1| 16S rRNA processing protein RimM [Rickettsia sibirica] gi|28261986|gb|EAA25490.1| 16S ... |
| Match: gi|15892396|ref|NP_360110.1| |
score: 55.07 |
e-value: 6.3e-06 |
Identity: 28.89% |
Span: 402bp (18.8%) |
Frame: 2 |
| gi|15892396|ref|NP_360110.1| 16S rRNA processing protein RimM [Rickettsia conorii] gi|20139550|sp|Q92IE7|RIMM_RICCN P... |
| Match: gi|15644316|ref|NP_229368.1| |
score: 55.07 |
e-value: 6.3e-06 |
Identity: 27.94% |
Span: 408bp (19.1%) |
Frame: 2 |
| gi|15644316|ref|NP_229368.1| 16S rRNA processing protein, putative [Thermotoga maritima] gi|6685868|sp|Q9X1Q4|RIMM_TH... |
| Match: gi|38109864|gb|EAA55669.1| |
score: 55.07 |
e-value: 6.3e-06 |
Identity: 27.41% |
Span: 549bp (25.7%) |
Frame: 2 |
| gi|38109864|gb|EAA55669.1| hypothetical protein MG01320.4 [Magnaporthe grisea 70-15] |
| Match: gi|48844428|ref|ZP_00298740.1| |
score: 54.68 |
e-value: 8.3e-06 |
Identity: 27.27% |
Span: 552bp (25.8%) |
Frame: 2 |
| gi|48844428|ref|ZP_00298740.1| COG0806: RimM protein, required for 16S rRNA processing [Geobacter metallireducens GS-... |
| Match: gi|42453609|ref|ZP_00153516.1| |
score: 54.68 |
e-value: 8.3e-06 |
Identity: 28.89% |
Span: 402bp (18.8%) |
Frame: 2 |
| gi|42453609|ref|ZP_00153516.1| hypothetical protein Rick046701 [Rickettsia rickettsii] |
| Match: gi|15966996|ref|NP_387349.1| |
score: 54.3 |
e-value: 1.1e-05 |
Identity: 30.51% |
Span: 525bp (24.6%) |
Frame: 2 |
| gi|15966996|ref|NP_387349.1| PROBABLE 16S RRNA PROCESSING PROTEIN [Sinorhizobium meliloti] gi|21362866|sp|Q92L42|RIMM... |
| Match: gi|48849817|ref|ZP_00304060.1| |
score: 53.53 |
e-value: 1.8e-05 |
Identity: 32.06% |
Span: 393bp (18.4%) |
Frame: 2 |
| gi|48849817|ref|ZP_00304060.1| COG0806: RimM protein, required for 16S rRNA processing [Novosphingobium aromaticivora... |
| Match: gi|480687|pir||S37174 |
score: 53.53 |
e-value: 1.8e-05 |
Identity: 27.27% |
Span: 522bp (24.4%) |
Frame: 2 |
| gi|480687|pir||S37174 hypothetical protein, 21K - Salmonella typhimurium gi|402166|emb|CAA52886.1| 21kD protein [Salm... |
|
| 57 lower scoring hits censored -- only 100 best hits are stored. |
