| genbank/nr [blastx] | Showing best 56 hits recorded |
| Match: gi|15237095|ref|NP_193777.1| |
score: 126.7 |
e-value: 8.3e-29 |
Identity: 88.57% |
Span: 204bp (98.1%) |
Frame: 3 |
| smB (small nuclear ribonucleoprotein associated protein B) [Arabidopsis thaliana] >gi30685110|ref|NP_849414.1| smB (s... |
| Match: gi|21536707|gb|AAM61039.1| |
score: 125.6 |
e-value: 1.9e-28 |
Identity: 87.32% |
Span: 204bp (98.1%) |
Frame: 3 |
| putative snRNP protein [Arabidopsis thaliana] |
| Match: gi|15241519|ref|NP_199263.1| |
score: 125.6 |
e-value: 1.9e-28 |
Identity: 87.32% |
Span: 204bp (98.1%) |
Frame: 3 |
| small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative [Arabidop... |
| Match: gi|33146808|dbj|BAC79756.1| |
score: 118.2 |
e-value: 3e-26 |
Identity: 83.82% |
Span: 198bp (95.2%) |
Frame: 3 |
| gi|33146808|dbj|BAC79756.1| putative snRNP(small nuclear ribonucleoprotein associated protein) [Oryza sativa (japonic... |
| Match: gi|34900024|ref|NP_911358.1| |
score: 118.2 |
e-value: 3e-26 |
Identity: 83.82% |
Span: 198bp (95.2%) |
Frame: 3 |
| gi|34900024|ref|NP_911358.1| putative snRNP protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|10720263|sp|Q9PV94|RSMB_CHICK |
score: 93.59 |
e-value: 7.8e-19 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|10720263|sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associated protein B' (snRNP-B') (Sm protein B') (Sm... |
| Match: gi|3142634|gb|AAC78612.1| |
score: 93.59 |
e-value: 7.8e-19 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|3142634|gb|AAC78612.1| small nuclear ribonucleoprotein N [Mus musculus] |
| Match: gi|6730226|pdb|1D3B|B |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|6730226|pdb|1D3B|B Chain B, Crystal Structure Of The D3b Subcomplex Of The Human Core Snrnp Domain At 2.0a Resolut... |
| Match: gi|5870129|gb|AAD54488.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|5870129|gb|AAD54488.1| small nuclear ribonucleoprotein B [Homo sapiens] |
| Match: gi|8099650|gb|AAF72188.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|8099650|gb|AAF72188.1| snRNP-associated protein; SmB [Danio rerio] |
| Match: gi|112305|pir||A35448 |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|112305|pir||A35448 small nuclear ribonucleoprotein-associated protein N - rat gi|206694|gb|AAA42059.1| snRNP-assoc... |
| Match: gi|7208221|gb|AAF40115.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|7208221|gb|AAF40115.1| small nuclear ribonucleoprotein B' [Macropus eugenii] |
| Match: gi|12643865|sp|Q9TU67|RSMB_ERIEU |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|12643865|sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein associated protein B' (snRNP-B') (Sm protein B') (Sm... |
| Match: gi|38150007|ref|NP_937859.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|38150007|ref|NP_937859.1| small nuclear ribonucleoprotein polypeptide B/B' isoform B'; Sm protein B/B'; small nucl... |
| Match: gi|4507135|ref|NP_003088.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|4507135|ref|NP_003088.1| small nuclear ribonucleoprotein polypeptide N; SM protein N; tissue-specific splicing pro... |
| Match: gi|5870130|gb|AAD54489.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|5870130|gb|AAD54489.1| small nuclear ribonucleoprotein B' [Homo sapiens] |
| Match: gi|190247|gb|AAA60151.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|190247|gb|AAA60151.1| snRNP polypeptide B |
| Match: gi|34858687|ref|XP_342517.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|34858687|ref|XP_342517.1| similar to small nuclear ribonucleoprotein B [Rattus norvegicus] |
| Match: gi|6678053|ref|NP_033251.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|6678053|ref|NP_033251.1| small nuclear ribonucleoprotein B [Mus musculus] gi|134038|sp|P27048|RSMB_MOUSE Small nuc... |
| Match: gi|4507125|ref|NP_003082.1| |
score: 93.2 |
e-value: 1e-18 |
Identity: 61.76% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|4507125|ref|NP_003082.1| small nuclear ribonucleoprotein polypeptide B/B' isoform B; Sm protein B/B'; small nuclea... |
| Match: gi|27371057|gb|AAH41275.1| |
score: 91.66 |
e-value: 3e-18 |
Identity: 60.29% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|27371057|gb|AAH41275.1| Snrpn-prov protein [Xenopus laevis] |
| Match: gi|27687269|ref|XP_212806.1| |
score: 90.89 |
e-value: 5.1e-18 |
Identity: 60.29% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|27687269|ref|XP_212806.1| similar to small nuclear ribonucleoprotein-associated protein N - rat [Rattus norvegicus] |
| Match: gi|31213159|ref|XP_315523.1| |
score: 90.12 |
e-value: 8.6e-18 |
Identity: 55.88% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|31213159|ref|XP_315523.1| ENSANGP00000007148 [Anopheles gambiae] gi|21299318|gb|EAA11463.1| ENSANGP00000007148 [An... |
| Match: gi|10720265|sp|Q9TU66|RSMB_MONDO |
score: 89.74 |
e-value: 1.1e-17 |
Identity: 60.29% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|10720265|sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein associated protein B' (snRNP-B') (Sm protein B') (Sm... |
| Match: gi|17136806|ref|NP_476921.1| |
score: 88.58 |
e-value: 2.5e-17 |
Identity: 54.41% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|17136806|ref|NP_476921.1| Small ribonucleoprotein particle protein B CG5352-PA [Drosophila melanogaster] gi|107202... |
| Match: gi|38048415|gb|AAR10110.1| |
score: 88.58 |
e-value: 2.5e-17 |
Identity: 54.41% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|38048415|gb|AAR10110.1| similar to Drosophila melanogaster SmB [Drosophila yakuba] |
| Match: gi|337459|gb|AAA36578.1| |
score: 87.81 |
e-value: 4.3e-17 |
Identity: 61.9% |
Span: 189bp (90.9%) |
Frame: 3 |
| gi|337459|gb|AAA36578.1| small nuclear ribonucleoprotein particle (SmB) |
| Match: gi|337461|gb|AAA36579.1| |
score: 87.81 |
e-value: 4.3e-17 |
Identity: 61.9% |
Span: 189bp (90.9%) |
Frame: 3 |
| gi|337461|gb|AAA36579.1| small nuclear ribonucleoprotein particle (SmB') |
| Match: gi|28828464|gb|AAL92641.2| |
score: 86.27 |
e-value: 1.2e-16 |
Identity: 62.9% |
Span: 186bp (89.4%) |
Frame: 3 |
| gi|28828464|gb|AAL92641.2| similar to Arabidopsis thaliana (Mouse-ear cress). Similarity to small nuclear ribonucleop... |
| Match: gi|17509627|ref|NP_493348.1| |
score: 85.11 |
e-value: 2.8e-16 |
Identity: 51.47% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|17509627|ref|NP_493348.1| small nuclear ribonucleoprotein, small nuclear ribonucleoprotein SNR-2 (16.7 kD) (snr-2)... |
| Match: gi|34869034|ref|XP_345547.1| |
score: 83.57 |
e-value: 8.1e-16 |
Identity: 57.35% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|34869034|ref|XP_345547.1| similar to Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B)... |
| Match: gi|38076462|ref|XP_147856.2| |
score: 80.88 |
e-value: 5.2e-15 |
Identity: 56.92% |
Span: 195bp (93.8%) |
Frame: 3 |
| gi|38076462|ref|XP_147856.2| similar to Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm protein N)... |
| Match: gi|38107284|gb|EAA53477.1| |
score: 80.49 |
e-value: 6.8e-15 |
Identity: 55.13% |
Span: 198bp (95.2%) |
Frame: 3 |
| gi|38107284|gb|EAA53477.1| hypothetical protein MG07754.4 [Magnaporthe grisea 70-15] |
| Match: gi|32422527|ref|XP_331707.1| |
score: 78.57 |
e-value: 2.6e-14 |
Identity: 52.56% |
Span: 198bp (95.2%) |
Frame: 3 |
| gi|32422527|ref|XP_331707.1| hypothetical protein [Neurospora crassa] gi|28927451|gb|EAA36403.1| hypothetical protein... |
| Match: gi|13160046|emb|CAC32828.1| |
score: 77.8 |
e-value: 4.4e-14 |
Identity: 64.81% |
Span: 162bp (77.9%) |
Frame: 3 |
| gi|13160046|emb|CAC32828.1| dJ734P14.2.3 (small nuclear ribonucleoprotein polypeptide B (isoform 3)) [Homo sapiens] |
| Match: gi|7208223|gb|AAF40116.1| |
score: 77.03 |
e-value: 7.6e-14 |
Identity: 64.81% |
Span: 162bp (77.9%) |
Frame: 3 |
| gi|7208223|gb|AAF40116.1| truncated small nuclear ribonucleoprotein B' [Macropus eugenii] |
| Match: gi|5870115|gb|AAD54483.1| |
score: 73.94 |
e-value: 6.4e-13 |
Identity: 62.96% |
Span: 162bp (77.9%) |
Frame: 3 |
| gi|5870115|gb|AAD54483.1| truncated small nuclear ribonucleoprotein B' [Monodelphis domestica] |
| Match: gi|38090876|ref|XP_356505.1| |
score: 71.63 |
e-value: 3.2e-12 |
Identity: 53.33% |
Span: 180bp (86.5%) |
Frame: 3 |
| gi|38090876|ref|XP_356505.1| similar to Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm protein N)... |
| Match: gi|134545|sp|P17136|RSMB_RAT |
score: 68.55 |
e-value: 2.7e-11 |
Identity: 56.86% |
Span: 153bp (73.6%) |
Frame: 3 |
| gi|134545|sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm protein B) (Sm-B) (Sm... |
| Match: gi|23509367|ref|NP_702034.1| |
score: 68.17 |
e-value: 3.5e-11 |
Identity: 47.06% |
Span: 204bp (98.1%) |
Frame: 3 |
| gi|23509367|ref|NP_702034.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7] gi|23497211|gb|AAN36758.1| ribon... |
| Match: gi|36495|emb|CAA34288.1| |
score: 67.4 |
e-value: 6e-11 |
Identity: 60.42% |
Span: 144bp (69.2%) |
Frame: 3 |
| gi|36495|emb|CAA34288.1| SmB /B' autoimmune antigene [Homo sapiens] |
| Match: gi|6320867|ref|NP_010946.1| |
score: 63.16 |
e-value: 1.1e-09 |
Identity: 44.3% |
Span: 201bp (96.6%) |
Frame: 3 |
| gi|6320867|ref|NP_010946.1| associated with U1, U2, U4, and U5 snRNPs as part of the Sm-core that is common to all sp... |
| Match: gi|19115063|ref|NP_594151.1| |
score: 60.08 |
e-value: 9.6e-09 |
Identity: 42.42% |
Span: 195bp (93.8%) |
Frame: 3 |
| gi|19115063|ref|NP_594151.1| small nuclear ribonucleoprotein associated protein b [Schizosaccharomyces pombe] gi|1723... |
| Match: gi|34875499|ref|XP_224436.2| |
score: 55.45 |
e-value: 2.4e-07 |
Identity: 51.06% |
Span: 141bp (67.8%) |
Frame: 3 |
| gi|34875499|ref|XP_224436.2| similar to Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm protein N)... |
| Match: gi|90142|pir||S10580 |
score: 54.68 |
e-value: 4e-07 |
Identity: 65% |
Span: 120bp (57.7%) |
Frame: 3 |
| gi|90142|pir||S10580 snRNP protein B/B' - rabbit (fragment) |
| Match: gi|33944811|ref|XP_340553.1| |
score: 47.75 |
e-value: 4.9e-05 |
Identity: 44.44% |
Span: 186bp (89.4%) |
Frame: 3 |
| gi|33944811|ref|XP_340553.1| small nuclear ribonucleoprotein protein, putative [Trypanosoma brucei] gi|33348587|gb|AA... |
| Match: gi|24655606|ref|NP_647660.1| |
score: 39.66 |
e-value: 0.013 |
Identity: 33.96% |
Span: 159bp (76.4%) |
Frame: 3 |
| gi|24655606|ref|NP_647660.1| CG2021-PA [Drosophila melanogaster] gi|7292155|gb|AAF47567.1| CG2021-PA [Drosophila mela... |
| Match: gi|21707073|gb|AAH33861.1| |
score: 39.66 |
e-value: 0.013 |
Identity: 36.73% |
Span: 147bp (70.7%) |
Frame: 3 |
| gi|21707073|gb|AAH33861.1| MGC14151 protein [Homo sapiens] |
| Match: gi|12858676|dbj|BAB31406.1| |
score: 39.66 |
e-value: 0.013 |
Identity: 36.73% |
Span: 147bp (70.7%) |
Frame: 3 |
| gi|12858676|dbj|BAB31406.1| unnamed protein product [Mus musculus] gi|38328385|gb|AAH62267.1| Unknown (protein for MG... |
| Match: gi|27672880|ref|XP_213347.1| |
score: 39.66 |
e-value: 0.013 |
Identity: 36.73% |
Span: 147bp (70.7%) |
Frame: 3 |
| gi|27672880|ref|XP_213347.1| similar to hypothetical protein MGC14151 [Rattus norvegicus] |
| Match: gi|14150161|ref|NP_115732.1| |
score: 39.66 |
e-value: 0.013 |
Identity: 36.73% |
Span: 147bp (70.7%) |
Frame: 3 |
| gi|14150161|ref|NP_115732.1| hypothetical protein MGC14151 [Homo sapiens] gi|13623585|gb|AAH06407.1| Hypothetical pro... |
| Match: gi|22328770|ref|NP_680719.1| |
score: 38.89 |
e-value: 0.023 |
Identity: 31.25% |
Span: 192bp (92.3%) |
Frame: 3 |
| small nuclear ribonucleoprotein-related / snRNP-related [Arabidopsis thaliana] |
| Match: gi|17544592|ref|NP_502034.1| |
score: 38.51 |
e-value: 0.03 |
Identity: 30.65% |
Span: 186bp (89.4%) |
Frame: 3 |
| gi|17544592|ref|NP_502034.1| u6 snRNA-associated Sm-like protein (lsm-6) [Caenorhabditis elegans] gi|7511226|pir||T27... |
| Match: gi|15218164|ref|NP_173542.1| |
score: 38.12 |
e-value: 0.039 |
Identity: 45.71% |
Span: 105bp (50.5%) |
Frame: 3 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi8920641|... |
| Match: gi|15223768|ref|NP_177812.1| |
score: 37.74 |
e-value: 0.051 |
Identity: 42.86% |
Span: 105bp (50.5%) |
Frame: 3 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi12322228... |
| Match: gi|15897150|ref|NP_341755.1| |
score: 36.96 |
e-value: 0.087 |
Identity: 47.37% |
Span: 114bp (54.8%) |
Frame: 3 |
| gi|15897150|ref|NP_341755.1| Small nuclear riboprotein protein (snRNP-1) [Sulfolobus solfataricus] gi|25394288|pir||B... |
|
| arabidopsis/peptide [blastx] | Showing best 12 hits recorded |
| Match: At4g20440.2 |
score: 126.7 |
e-value: 2.1e-30 |
Identity: 88.57% |
Span: 204bp (98.1%) |
Frame: 3 |
| At4g20440.2 68411.m05272 small nuclear ribonucleoprotein, putative (snRNP) similar to small nuclear ribonucleoprotein... |
| Match: At4g20440.1 |
score: 126.7 |
e-value: 2.1e-30 |
Identity: 88.57% |
Span: 204bp (98.1%) |
Frame: 3 |
| At4g20440.1 68411.m05271 small nuclear ribonucleoprotein, putative (snRNP) similar to small nuclear ribonucleoprotein... |
| Match: At5g44500.1 |
score: 125.6 |
e-value: 4.6e-30 |
Identity: 87.32% |
Span: 204bp (98.1%) |
Frame: 3 |
| At5g44500.1 68412.m04915 small nuclear ribonucleoprotein, putative (snRNP) similar to small nuclear ribonucleoprotein... |
| Match: At4g18372.1 |
score: 38.89 |
e-value: 0.00057 |
Identity: 31.25% |
Span: 192bp (92.3%) |
Frame: 3 |
| At4g18372.1 68411.m02486 expressed protein |
| Match: At1g21190.1 |
score: 38.12 |
e-value: 0.001 |
Identity: 45.71% |
Span: 105bp (50.5%) |
Frame: 3 |
| At1g21190.1 68408.m02395 expressed protein |
| Match: At1g76860.1 |
score: 37.74 |
e-value: 0.001 |
Identity: 42.86% |
Span: 105bp (50.5%) |
Frame: 3 |
| At1g76860.1 68408.m08211 Sm-related protein contains Pfam profile: PF01423: Sm protein |
| Match: At3g14080.2 |
score: 33.88 |
e-value: 0.018 |
Identity: 35.71% |
Span: 123bp (59.1%) |
Frame: 3 |
| At3g14080.2 68410.m06789 Sm protein -related similar to GB:AAB62189 from [Homo sapiens], contains Pfam profile: PF014... |
| Match: At3g14080.1 |
score: 33.88 |
e-value: 0.018 |
Identity: 35.71% |
Span: 123bp (59.1%) |
Frame: 3 |
| At3g14080.1 68410.m06788 Sm protein -related similar to GB:AAB62189 from [Homo sapiens], contains Pfam profile: PF014... |
| Match: At3g62840.1 |
score: 33.5 |
e-value: 0.024 |
Identity: 35.42% |
Span: 138bp (66.3%) |
Frame: 3 |
| At3g62840.1 68410.m06523 small nuclear ribonucleo protein-related protein small nuclear ribonucleoprotein chain D2 - ... |
| Match: At2g47640.2 |
score: 33.5 |
e-value: 0.024 |
Identity: 35.42% |
Span: 138bp (66.3%) |
Frame: 3 |
| At2g47640.2 68409.m05576 small nuclear ribonucleo protein D2 -related |
| Match: At2g47640.1 |
score: 33.5 |
e-value: 0.024 |
Identity: 35.42% |
Span: 138bp (66.3%) |
Frame: 3 |
| At2g47640.1 68409.m05575 small nuclear ribonucleo protein D2 -related |
| Match: At1g19120.1 |
score: 31.96 |
e-value: 0.07 |
Identity: 30.95% |
Span: 126bp (60.6%) |
Frame: 3 |
| At1g19120.1 68408.m02146 expressed protein |
|
