| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|224077112|ref|XP_002305137.1| |
score: 525 |
e-value: 6e-147 |
Identity: 99.61% |
Span: 765bp (39.8%) |
Frame: 2 |
| predicted protein [Populus trichocarpa] >gi222848101|gb|EEE85648.1| predicted protein [Populus trichocarpa] |
| Match: gi|11134656|sp|Q42877.1|RPB2_SOLLC |
score: 525 |
e-value: 6e-147 |
Identity: 99.61% |
Span: 765bp (39.8%) |
Frame: 2 |
| RecName: Full=DNA-directed RNA polymerase II subunit RPB2; Short=RNA polymerase II subunit B2; Short=RNA polymerase I... |
| Match: gi|255556051|ref|XP_002519060.1| |
score: 524 |
e-value: 1e-146 |
Identity: 99.22% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit, putative [Ricinus communis] >gi223541723|gb|EEF43271.1| DNA-directed RNA poly... |
| Match: gi|68300810|gb|AAY89346.1| |
score: 523 |
e-value: 2e-146 |
Identity: 99.22% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Nicotiana sylvestris] |
| Match: gi|225446351|ref|XP_002274051.1| |
score: 523 |
e-value: 3e-146 |
Identity: 98.82% |
Span: 765bp (39.8%) |
Frame: 2 |
| PREDICTED: hypothetical protein [Vitis vinifera] >gi147841183|emb|CAN72948.1| hypothetical protein [Vitis vinifera] >... |
| Match: gi|68300812|gb|AAY89347.1| |
score: 523 |
e-value: 3e-146 |
Identity: 98.82% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Petunia x hybrida] |
| Match: gi|68300814|gb|AAY89348.1| |
score: 522 |
e-value: 5e-146 |
Identity: 98.43% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Antirrhinum majus] |
| Match: gi|70794966|gb|AAZ08457.1| |
score: 520 |
e-value: 2e-145 |
Identity: 97.65% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Rhododendron macrophyllum] |
| Match: gi|222625458|gb|EEE59590.1| |
score: 517 |
e-value: 2e-144 |
Identity: 97.25% |
Span: 765bp (39.8%) |
Frame: 2 |
| hypothetical protein OsJ_11898 [Oryza sativa Japonica Group] |
| Match: gi|115454339|ref|NP_001050770.1| |
score: 517 |
e-value: 2e-144 |
Identity: 97.25% |
Span: 765bp (39.8%) |
Frame: 2 |
| Os03g0646800 [Oryza sativa (japonica cultivar-group)] >gi113549241|dbj|BAF12684.1| Os03g0646800 [Oryza sativa Japonic... |
| Match: gi|108710089|gb|ABF97884.1| |
score: 517 |
e-value: 2e-144 |
Identity: 97.25% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II 135 kDa polypeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] >gi1... |
| Match: gi|70794986|gb|AAZ08467.1| |
score: 514 |
e-value: 1e-143 |
Identity: 96.86% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Linanthus californicus] |
| Match: gi|16488|emb|CAA79527.1| |
score: 512 |
e-value: 7e-143 |
Identity: 96.47% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Arabidopsis thaliana] |
| Match: gi|16486|emb|CAA79528.1| |
score: 512 |
e-value: 7e-143 |
Identity: 96.47% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Arabidopsis thaliana] |
| Match: gi|15234572|ref|NP_193902.1| |
score: 512 |
e-value: 7e-143 |
Identity: 96.47% |
Span: 765bp (39.8%) |
Frame: 2 |
| NRPB2; DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] >gi21542437|sp|P38420.2|RPB2_ARATH RecName: F... |
| Match: gi|224031673|gb|ACN34912.1| |
score: 511 |
e-value: 9e-143 |
Identity: 96.47% |
Span: 765bp (39.8%) |
Frame: 2 |
| unknown [Zea mays] |
| Match: gi|242038711|ref|XP_002466750.1| |
score: 509 |
e-value: 5e-142 |
Identity: 95.69% |
Span: 765bp (39.8%) |
Frame: 2 |
| hypothetical protein SORBIDRAFT_01g013470 [Sorghum bicolor] >gi241920604|gb|EER93748.1| hypothetical protein SORBIDRA... |
| Match: gi|168027816|ref|XP_001766425.1| |
score: 507 |
e-value: 2e-141 |
Identity: 94.51% |
Span: 765bp (39.8%) |
Frame: 2 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162682334|gb|EDQ68753.1| predicted protein [Physcomitrella... |
| Match: gi|68300802|gb|AAY89343.1| |
score: 501 |
e-value: 1e-139 |
Identity: 92.55% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Antirrhinum majus] |
| Match: gi|68300804|gb|AAY89344.1| |
score: 500 |
e-value: 2e-139 |
Identity: 92.94% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Petunia x hybrida] |
| Match: gi|68300799|gb|AAY89342.1| |
score: 495 |
e-value: 7e-138 |
Identity: 92.16% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Nicotiana sylvestris] |
| Match: gi|70794968|gb|AAZ08458.1| |
score: 493 |
e-value: 3e-137 |
Identity: 92.16% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Rhododendron macrophyllum] |
| Match: gi|120407526|gb|AAY82000.2| |
score: 488 |
e-value: 1e-135 |
Identity: 90.98% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Coleochaete scutata] |
| Match: gi|67810558|gb|AAY81998.1| |
score: 486 |
e-value: 4e-135 |
Identity: 88.17% |
Span: 786bp (40.9%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Spirogyra sp. UWCC FW670] |
| Match: gi|68300807|gb|AAY89345.1| |
score: 486 |
e-value: 5e-135 |
Identity: 90.2% |
Span: 765bp (39.8%) |
Frame: 2 |
| RNA polymerase II second largest subunit [Solanum lycopersicum] |
|
| 225 lower scoring hits censored -- only 25 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 8 hits recorded |
| Match: At4G21710.1 |
score: 512 |
e-value: 3e-145 |
Identity: 96.47% |
Span: 765bp (39.8%) |
Frame: 2 |
| Symbols: EMB1989, RPB2, NRPB2 | NRPB2 (EMBRYO DEFECTIVE 1989); DNA binding | chr4:11535696-11542212 REVERSE |
| Match: At5G45140.1 |
score: 254 |
e-value: 2e-67 |
Identity: 47.86% |
Span: 756bp (39.4%) |
Frame: 2 |
| Symbols: NRPC2 | NRPC2 (nuclear RNA polymerase C 2); DNA binding / DNA-directed RNA polymerase | chr5:18264643-18274... |
| Match: At3G23780.1 |
score: 244 |
e-value: 1e-64 |
Identity: 45.96% |
Span: 762bp (39.7%) |
Frame: 2 |
| Symbols: DRD2, NRPD2, NRPD2a | NRPD2a (NUCLEAR RNA POLYMERASE D 2A); DNA binding / DNA-directed RNA polymerase | chr... |
| Match: At3G18090.1 |
score: 239 |
e-value: 4e-63 |
Identity: 45.42% |
Span: 762bp (39.7%) |
Frame: 2 |
| Symbols: NRPD2b | NRPD2b (nuclear RNA polymerase D 2b); DNA binding / DNA-directed RNA polymerase | chr3:6195329-620... |
| Match: At1G29940.1 |
score: 209 |
e-value: 6e-54 |
Identity: 41.79% |
Span: 738bp (38.4%) |
Frame: 2 |
| Symbols: NRPA2 | NRPA2 (nuclear RNA polymerase A 2); DNA-directed RNA polymerase | chr1:10479306-10486654 REVERSE |
| Match: AtCG00190.1 |
score: 125 |
e-value: 1e-28 |
Identity: 32.7% |
Span: 588bp (30.6%) |
Frame: 2 |
| Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a... |
| Match: At5G18440.2 |
score: 74.7 |
e-value: 2e-13 |
Identity: 43.27% |
Span: 297bp (15.5%) |
Frame: 2 |
| similar to Os01g0814000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044603.1); similar to P0432B10.22 [Oryza ... |
| Match: At5G18440.1 |
score: 74.7 |
e-value: 2e-13 |
Identity: 43.27% |
Span: 297bp (15.5%) |
Frame: 2 |
| similar to Os01g0814000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044603.1); similar to P0432B10.22 [Oryza ... |
|
| swissprot [blastx] | Showing best 25 hits recorded |
| Match: Q42877 |
score: 525 |
e-value: 4e-148 |
Identity: 99.61% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1 |
| Match: P38420 |
score: 512 |
e-value: 4e-144 |
Identity: 96.47% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2 |
| Match: Q54J75 |
score: 443 |
e-value: 2e-123 |
Identity: 82.75% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1 |
| Match: Q753Q4 |
score: 409 |
e-value: 4e-113 |
Identity: 74.61% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii GN=RPB2 PE=3 SV=1 |
| Match: P08518 |
score: 402 |
e-value: 6e-111 |
Identity: 73.44% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces cerevisiae GN=RPB2 PE=1 SV=2 |
| Match: Q6FLD5 |
score: 401 |
e-value: 8e-111 |
Identity: 73.05% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata GN=RPB2 PE=3 SV=1 |
| Match: A5DHT2 |
score: 400 |
e-value: 1e-110 |
Identity: 73.05% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3 |
| Match: P08266 |
score: 394 |
e-value: 1e-108 |
Identity: 72.94% |
Span: 762bp (39.7%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2 |
| Match: Q02061 |
score: 393 |
e-value: 3e-108 |
Identity: 72.55% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe GN=rpb2 PE=1 SV=2 |
| Match: Q8CFI7 |
score: 392 |
e-value: 6e-108 |
Identity: 71.88% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2 |
| Match: P30876 |
score: 392 |
e-value: 6e-108 |
Identity: 71.88% |
Span: 765bp (39.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1 |
| Match: Q10578 |
score: 387 |
e-value: 2e-106 |
Identity: 69.41% |
Span: 762bp (39.7%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rpb-2 PE=2 SV=2 |
| Match: Q8SR75 |
score: 368 |
e-value: 1e-100 |
Identity: 70.36% |
Span: 759bp (39.5%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1 |
| Match: Q7T6X7 |
score: 291 |
e-value: 1e-77 |
Identity: 55.51% |
Span: 786bp (40.9%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit 2 OS=Acanthamoeba polyphaga mimivirus GN=RPO2 PE=1 SV=2 |
| Match: O27124 |
score: 288 |
e-value: 1e-76 |
Identity: 54.37% |
Span: 756bp (39.4%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Methanobacterium thermoautotrophicum GN=rpoB1 PE=3 SV=1 |
| Match: P31814 |
score: 286 |
e-value: 4e-76 |
Identity: 55.95% |
Span: 756bp (39.4%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB PE=3 SV=1 |
| Match: P09845 |
score: 281 |
e-value: 9e-75 |
Identity: 54.55% |
Span: 756bp (39.4%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Methanobacterium thermoautotrophicum (strain Winter) GN=rpoB1 PE=3 SV=2 |
| Match: P11513 |
score: 280 |
e-value: 3e-74 |
Identity: 54.33% |
Span: 759bp (39.5%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B OS=Sulfolobus acidocaldarius GN=rpoB PE=3 SV=2 |
| Match: Q60181 |
score: 278 |
e-value: 1e-73 |
Identity: 53.88% |
Span: 756bp (39.4%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus jannaschii GN=rpoB1 PE=3 SV=1 |
| Match: P15351 |
score: 277 |
e-value: 2e-73 |
Identity: 51.39% |
Span: 753bp (39.2%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarium GN=rpoB1 PE=1 SV=3 |
| Match: O28392 |
score: 276 |
e-value: 3e-73 |
Identity: 53.57% |
Span: 756bp (39.4%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus GN=rpoB1 PE=4 SV=1 |
| Match: Q03587 |
score: 272 |
e-value: 5e-72 |
Identity: 52.47% |
Span: 783bp (40.8%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B OS=Thermoplasma acidophilum GN=rpoB PE=3 SV=1 |
| Match: P41557 |
score: 271 |
e-value: 1e-71 |
Identity: 52.92% |
Span: 753bp (39.2%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2 |
| Match: P22276 |
score: 270 |
e-value: 2e-71 |
Identity: 52.31% |
Span: 780bp (40.6%) |
Frame: 2 |
| DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2 |
| Match: Q10233 |
score: 267 |
e-value: 2e-70 |
Identity: 51.94% |
Span: 774bp (40.3%) |
Frame: 2 |
| DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe GN=rpc2 PE=2 SV=1 |
|
| 225 lower scoring hits censored -- only 25 best hits are stored. |
