Notice: We have moved solgenomics to a new server and hosting system which caused some instability over the last few days. We apologize for any inconvenience.

All Stored BLAST annotations for SGN-U336824
arabidopsis/peptide [blastx] Showing best 100 hits recorded
Match: At1G71800.1 score: 272 e-value: 5e-73 Identity: 44.62% Span: 1224bp (72.2%) Frame: 3
cleavage stimulation factor, putative | chr1:27003268-27005512 FORWARD
Match: At3G47120.1 score: 69.3 e-value: 7e-12 Identity: 36.78% Span: 261bp (15.4%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr3:17362319-17363754 REVERSE
Match: At1G60900.1 score: 64.7 e-value: 2e-10 Identity: 44.44% Span: 216bp (12.7%) Frame: 3
U2 snRNP auxiliary factor large subunit, putative | chr1:22427673-22431471 FORWARD
Match: At5G61030.1 score: 61.2 e-value: 2e-09 Identity: 37.04% Span: 243bp (14.3%) Frame: 3
Symbols: GR-RBP3 | GR-RBP3 (glycine-rich RNA-binding protein 3); RNA binding | chr5:24578096-24579378 FORWARD
Match: At2G18510.1 score: 61.2 e-value: 2e-09 Identity: 35.24% Span: 315bp (18.6%) Frame: 3
Symbols: EMB2444 | EMB2444 (EMBRYO DEFECTIVE 2444); RNA binding | chr2:8038636-8040599 REVERSE
Match: At4G00830.1 score: 60.8 e-value: 2e-09 Identity: 36.62% Span: 213bp (12.6%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr4:352782-354965 FORWARD
Match: At4G24770.1 score: 60.8 e-value: 2e-09 Identity: 41.33% Span: 225bp (13.3%) Frame: 3
Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding | chr4:12766233-12767962 RE...
Match: At4G00830.2 score: 60.8 e-value: 2e-09 Identity: 36.62% Span: 213bp (12.6%) Frame: 3
RNA binding | chr4:352782-354965 FORWARD
Match: At4G36690.2 score: 60.5 e-value: 3e-09 Identity: 43.06% Span: 216bp (12.7%) Frame: 3
Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4:17294595-17297613 REVERSE
Match: At4G36690.1 score: 60.5 e-value: 3e-09 Identity: 43.06% Span: 216bp (12.7%) Frame: 3
Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4:17294143-17297613 REVERSE
Match: At4G36690.3 score: 60.5 e-value: 3e-09 Identity: 43.06% Span: 216bp (12.7%) Frame: 3
Symbols: ATU2AF65A | ATU2AF65A; RNA binding | chr4:17294426-17297613 REVERSE
Match: At1G60000.1 score: 60.1 e-value: 4e-09 Identity: 37.97% Span: 237bp (14.0%) Frame: 3
29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | chr1:22097343-22098205 REVERSE
Match: At5G50250.1 score: 59.7 e-value: 5e-09 Identity: 37.33% Span: 225bp (13.3%) Frame: 3
31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, p...
Match: At3G23830.2 score: 59.3 e-value: 7e-09 Identity: 31.18% Span: 279bp (16.5%) Frame: 3
Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding | chr3:8606769-8607684 REVERSE
Match: At3G23830.1 score: 59.3 e-value: 7e-09 Identity: 31.18% Span: 279bp (16.5%) Frame: 3
Symbols: GR-RBP4, GRP4 | GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4); RNA binding / double-stranded DNA bindin...
Match: At1G55310.1 score: 58.9 e-value: 9e-09 Identity: 36.56% Span: 276bp (16.3%) Frame: 3
Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like splicing factor 33); RNA binding | chr1:20634343-20636161 FORWARD
Match: At1G55310.2 score: 58.9 e-value: 9e-09 Identity: 36.56% Span: 276bp (16.3%) Frame: 3
Symbols: ATSCL33, SCL33, SR33 | SR33 (SC35-like splicing factor 33); RNA binding | chr1:20634343-20636240 FORWARD
Match: At4G13850.1 score: 57.4 e-value: 3e-08 Identity: 34.57% Span: 243bp (14.3%) Frame: 3
Symbols: GR-RBP2, ATGRP2 | ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); RNA binding / double-stranded DNA binding / ...
Match: At4G13850.2 score: 57.4 e-value: 3e-08 Identity: 34.57% Span: 243bp (14.3%) Frame: 3
Symbols: GR-RBP2, ATGRP2 | ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); RNA binding | chr4:8021310-8022061 FORWARD
Match: At5G51300.1 score: 57 e-value: 3e-08 Identity: 35.06% Span: 231bp (13.6%) Frame: 3
splicing factor-related | chr5:20867107-20869521 REVERSE
Match: At5G51300.3 score: 57 e-value: 3e-08 Identity: 35.06% Span: 231bp (13.6%) Frame: 3
nucleic acid binding / nucleotide binding / zinc ion binding | chr5:20867107-20869521 REVERSE
Match: At3G13570.1 score: 57 e-value: 3e-08 Identity: 35.48% Span: 276bp (16.3%) Frame: 3
Symbols: SCL30a | SCL30a (SC35-like splicing factor 30a); RNA binding | chr3:4429571-4431609 REVERSE
Match: At5G51300.2 score: 57 e-value: 3e-08 Identity: 35.06% Span: 231bp (13.6%) Frame: 3
splicing factor-related | chr5:20867107-20869521 REVERSE
Match: At3G50670.1 score: 57 e-value: 3e-08 Identity: 36.59% Span: 246bp (14.5%) Frame: 3
Symbols: U1SNRNP, U1-70K | U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding | chr3:18837457-18840473 REVERSE
Match: At1G74230.1 score: 56.2 e-value: 6e-08 Identity: 34.41% Span: 279bp (16.5%) Frame: 3
Symbols: GR-RBP5 | GR-RBP5 (glycine-rich RNA-binding protein 5); RNA binding | chr1:27919007-27920518 FORWARD
Match: At5G09880.1 score: 55.8 e-value: 8e-08 Identity: 33.03% Span: 309bp (18.2%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr5:3081647-3085180 REVERSE
Match: At1G78260.2 score: 55.8 e-value: 8e-08 Identity: 27.43% Span: 333bp (19.6%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:29452210-29454139 FORWARD
Match: At2G46780.1 score: 55.8 e-value: 8e-08 Identity: 30.12% Span: 249bp (14.7%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr2:19236586-19238017 FORWARD
Match: At1G78260.1 score: 55.8 e-value: 8e-08 Identity: 27.43% Span: 333bp (19.6%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:29452210-29455074 FORWARD
Match: At2G37220.1 score: 55.8 e-value: 8e-08 Identity: 34.25% Span: 219bp (12.9%) Frame: 3
29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | chr2:15642059-15643410 REVERSE
Match: At3G08000.1 score: 55.5 e-value: 1e-07 Identity: 30.95% Span: 252bp (14.9%) Frame: 3
RNA-binding protein, putative | chr3:2555040-2555835 REVERSE
Match: At2G37220.1 score: 55.5 e-value: 1e-07 Identity: 34.67% Span: 225bp (13.3%) Frame: 3
29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | chr2:15642059-15643410 REVERSE
Match: At2G16260.1 score: 55.1 e-value: 1e-07 Identity: 34.09% Span: 261bp (15.4%) Frame: 3
| Symbol: None | glycine-rich RNA-binding protein, putative, similar to Glycine-rich RNA-binding protein from {Daucus...
Match: At3G52380.1 score: 55.1 e-value: 1e-07 Identity: 34.88% Span: 258bp (15.2%) Frame: 3
Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322); RNA binding | chr3:19432597-19433833 FORWARD
Match: At1G02840.2 score: 54.7 e-value: 2e-07 Identity: 34.34% Span: 294bp (17.3%) Frame: 3
Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor 2); RNA binding | chr1:626918-628995 FORWARD
Match: At2G21660.1 score: 54.7 e-value: 2e-07 Identity: 28.16% Span: 309bp (18.2%) Frame: 3
Symbols: GR-RBP7, CCR2, ATGRP7 | ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded D...
Match: At3G52150.1 score: 54.7 e-value: 2e-07 Identity: 32.5% Span: 240bp (14.2%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr3:19353052-19354068 FORWARD
Match: At1G02840.3 score: 54.7 e-value: 2e-07 Identity: 34.34% Span: 294bp (17.3%) Frame: 3
Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor 2); RNA binding | chr1:626918-629583 FORWARD
Match: At3G52150.2 score: 54.7 e-value: 2e-07 Identity: 32.5% Span: 240bp (14.2%) Frame: 3
RNA binding | chr3:19353052-19354068 FORWARD
Match: At1G02840.1 score: 54.7 e-value: 2e-07 Identity: 34.34% Span: 294bp (17.3%) Frame: 3
Symbols: ATSRP34, SRP34, SR1 | SR1 (splicing factor 2); RNA binding | chr1:626918-629583 FORWARD
Match: At1G11650.2 score: 54.3 e-value: 2e-07 Identity: 29.06% Span: 336bp (19.8%) Frame: 3
Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3914895-3917941 FORWARD
Match: At5G50250.1 score: 54.3 e-value: 2e-07 Identity: 31.65% Span: 237bp (14.0%) Frame: 3
31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, p...
Match: At1G11650.1 score: 54.3 e-value: 2e-07 Identity: 29.06% Span: 336bp (19.8%) Frame: 3
Symbols: ATRBP45B | ATRBP45B; RNA binding | chr1:3914895-3917301 FORWARD
Match: At2G23350.1 score: 54.3 e-value: 2e-07 Identity: 30.59% Span: 255bp (15.0%) Frame: 3
Symbols: PAB4 | PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor | chr2:9950289-9953121...
Match: At5G06210.1 score: 53.9 e-value: 3e-07 Identity: 31.37% Span: 294bp (17.3%) Frame: 3
RNA-binding protein, putative | chr5:1878498-1879516 FORWARD
Match: At2G21660.2 score: 53.5 e-value: 4e-07 Identity: 30.59% Span: 255bp (15.0%) Frame: 3
Symbols: GR-RBP7, CCR2, ATGRP7 | ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding | chr2:9272557-9273...
Match: At1G73840.1 score: 53.5 e-value: 4e-07 Identity: 41.54% Span: 195bp (11.5%) Frame: 3
Symbols: ESP1 | ESP1 (ENHANCED SILENCING PHENOTYPE 1) | chr1:27767598-27769989 REVERSE
Match: At4G39260.1 score: 53.1 e-value: 5e-07 Identity: 29.73% Span: 222bp (13.1%) Frame: 3
Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8);...
Match: At4G39260.2 score: 53.1 e-value: 5e-07 Identity: 29.73% Span: 222bp (13.1%) Frame: 3
Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8);...
Match: At5G19960.1 score: 53.1 e-value: 5e-07 Identity: 34.74% Span: 276bp (16.3%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr5:6744031-6746135 FORWARD
Match: At4G39260.3 score: 53.1 e-value: 5e-07 Identity: 29.73% Span: 222bp (13.1%) Frame: 3
Symbols: GR-RBP8, ATGRP8, CCR1 | ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8);...
Match: At3G10400.1 score: 53.1 e-value: 5e-07 Identity: 26.27% Span: 324bp (19.1%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr3:3232641-3233426 FORWARD
Match: At2G43370.1 score: 52.8 e-value: 6e-07 Identity: 34.67% Span: 225bp (13.3%) Frame: 3
U1 small nuclear ribonucleoprotein 70 kDa, putative | chr2:18020508-18022453 FORWARD
Match: At1G22330.1 score: 52.8 e-value: 6e-07 Identity: 27.73% Span: 351bp (20.7%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:7886682-7887571 FORWARD
Match: At5G53680.1 score: 52.4 e-value: 8e-07 Identity: 28.04% Span: 321bp (18.9%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr5:21815608-21816335 FORWARD
Match: At4G27000.1 score: 52.4 e-value: 8e-07 Identity: 32.18% Span: 258bp (15.2%) Frame: 3
RNA-binding protein 45 (RBP45), putative | chr4:13554989-13557769 REVERSE
Match: At4G24770.1 score: 52 e-value: 1e-06 Identity: 32.5% Span: 240bp (14.2%) Frame: 3
Symbols: ATRBP31, CP31, ATRBP33, RBP31 | RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding | chr4:12766233-12767962 RE...
Match: At3G53460.2 score: 51.6 e-value: 1e-06 Identity: 32.88% Span: 219bp (12.9%) Frame: 3
Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding | chr3:19830716-19832401 REVERSE
Match: At3G53460.1 score: 51.6 e-value: 1e-06 Identity: 32.88% Span: 219bp (12.9%) Frame: 3
Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding | chr3:19830716-19832401 REVERSE
Match: At3G52660.1 score: 51.6 e-value: 1e-06 Identity: 32.39% Span: 213bp (12.6%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr3:19533576-19535713 FORWARD
Match: At3G52660.2 score: 51.6 e-value: 1e-06 Identity: 32.39% Span: 213bp (12.6%) Frame: 3
RNA binding | chr3:19533576-19535713 FORWARD
Match: At4G02430.2 score: 51.2 e-value: 2e-06 Identity: 30% Span: 300bp (17.7%) Frame: 3
pre-mRNA splicing factor, putative / SR1 protein, putative | chr4:1069186-1071313 FORWARD
Match: At3G07810.2 score: 51.2 e-value: 2e-06 Identity: 26.72% Span: 333bp (19.6%) Frame: 3
heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | chr3:2492881-2495108 FORWARD
Match: At3G07810.1 score: 51.2 e-value: 2e-06 Identity: 26.72% Span: 333bp (19.6%) Frame: 3
heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | chr3:2492881-2495058 FORWARD
Match: At4G02430.1 score: 51.2 e-value: 2e-06 Identity: 30% Span: 300bp (17.7%) Frame: 3
pre-mRNA splicing factor, putative / SR1 protein, putative | chr4:1069186-1070543 FORWARD
Match: At3G53460.1 score: 50.4 e-value: 3e-06 Identity: 32% Span: 225bp (13.3%) Frame: 3
Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding | chr3:19830716-19832401 REVERSE
Match: At4G19610.1 score: 50.4 e-value: 3e-06 Identity: 33.73% Span: 249bp (14.7%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr4:10677675-10681633 FORWARD
Match: At4G03110.1 score: 50.4 e-value: 3e-06 Identity: 25% Span: 324bp (19.1%) Frame: 3
RNA-binding protein, putative | chr4:1376612-1379275 REVERSE
Match: At1G22910.2 score: 50.4 e-value: 3e-06 Identity: 28.16% Span: 309bp (18.2%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:8105797-8107607 FORWARD
Match: At1G33470.2 score: 50.4 e-value: 3e-06 Identity: 28.23% Span: 363bp (21.4%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:12144612-12146020 FORWARD
Match: At1G33470.1 score: 50.4 e-value: 3e-06 Identity: 28.23% Span: 363bp (21.4%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:12144612-12146020 FORWARD
Match: At1G03457.2 score: 50.4 e-value: 3e-06 Identity: 26.88% Span: 279bp (16.5%) Frame: 3
RNA-binding protein, putative | chr1:861109-864019 REVERSE
Match: At1G49760.1 score: 50.4 e-value: 3e-06 Identity: 32.91% Span: 237bp (14.0%) Frame: 3
Symbols: PAB8 | PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor | chr1:18420408-184234...
Match: At1G03457.1 score: 50.4 e-value: 3e-06 Identity: 26.88% Span: 279bp (16.5%) Frame: 3
RNA-binding protein, putative | chr1:861109-864019 REVERSE
Match: At1G22910.1 score: 50.4 e-value: 3e-06 Identity: 28.16% Span: 309bp (18.2%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:8105797-8107648 FORWARD
Match: At3G53460.2 score: 50.4 e-value: 3e-06 Identity: 32% Span: 225bp (13.3%) Frame: 3
Symbols: CP29 | CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding | chr3:19830716-19832401 REVERSE
Match: At1G22910.3 score: 50.4 e-value: 3e-06 Identity: 28.16% Span: 309bp (18.2%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:8105797-8107938 FORWARD
Match: At5G09880.1 score: 49.3 e-value: 7e-06 Identity: 28.95% Span: 342bp (20.2%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr5:3081647-3085180 REVERSE
Match: At2G22100.1 score: 49.3 e-value: 7e-06 Identity: 33.82% Span: 204bp (12.0%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr2:9399477-9400625 REVERSE
Match: At5G54900.1 score: 48.9 e-value: 9e-06 Identity: 32.91% Span: 234bp (13.8%) Frame: 3
Symbols: ATRBP45A | ATRBP45A (RNA-BINDING PROTEIN 45A); RNA binding | chr5:22312638-22315352 FORWARD
Match: At1G47490.1 score: 48.9 e-value: 9e-06 Identity: 33.33% Span: 276bp (16.3%) Frame: 3
Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:17427241-17429622 FORWARD
Match: At3G46020.1 score: 48.9 e-value: 9e-06 Identity: 32.47% Span: 231bp (13.6%) Frame: 3
RNA-binding protein, putative | chr3:16923496-16924235 REVERSE
Match: At3G26420.1 score: 48.9 e-value: 9e-06 Identity: 24.35% Span: 300bp (17.7%) Frame: 3
Symbols: ATRZ-1A | ATRZ-1A; RNA binding / nucleotide binding | chr3:9673190-9674292 FORWARD
Match: At1G60650.2 score: 48.9 e-value: 9e-06 Identity: 28% Span: 225bp (13.3%) Frame: 3
glycine-rich RNA-binding protein, putative | chr1:22343754-22345813 FORWARD
Match: At1G76460.1 score: 48.9 e-value: 9e-06 Identity: 37.1% Span: 186bp (11.0%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:28691826-28693400 REVERSE
Match: At1G47490.2 score: 48.9 e-value: 9e-06 Identity: 33.33% Span: 276bp (16.3%) Frame: 3
Symbols: ATRBP47C | ATRBP47C; RNA binding | chr1:17427241-17428554 FORWARD
Match: At1G60650.1 score: 48.9 e-value: 9e-06 Identity: 28% Span: 225bp (13.3%) Frame: 3
glycine-rich RNA-binding protein, putative | chr1:22343754-22345813 FORWARD
Match: At3G20930.1 score: 48.5 e-value: 1e-05 Identity: 31.18% Span: 279bp (16.5%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr3:7331745-7333755 FORWARD
Match: At1G47500.1 score: 48.5 e-value: 1e-05 Identity: 33.33% Span: 276bp (16.3%) Frame: 3
Symbols: ATRBP47C' | ATRBP47C' (RNA-BINDING PROTEIN 47C'); RNA binding | chr1:17435122-17437245 FORWARD
Match: At4G00830.1 score: 48.1 e-value: 2e-05 Identity: 26.85% Span: 324bp (19.1%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr4:352782-354965 FORWARD
Match: At1G20880.1 score: 48.1 e-value: 2e-05 Identity: 35.48% Span: 186bp (11.0%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:7262868-7264823 REVERSE
Match: At5G18810.1 score: 48.1 e-value: 2e-05 Identity: 27.96% Span: 279bp (16.5%) Frame: 3
Symbols: SCL28 | SCL28 (SC35-like splicing factor 28); RNA binding | chr5:6268927-6271160 REVERSE
Match: At4G00830.2 score: 48.1 e-value: 2e-05 Identity: 26.85% Span: 324bp (19.1%) Frame: 3
RNA binding | chr4:352782-354965 FORWARD
Match: At3G19130.1 score: 48.1 e-value: 2e-05 Identity: 34.83% Span: 264bp (15.6%) Frame: 3
Symbols: ATRBP47B | ATRBP47B (RNA-BINDING PROTEIN 47B); RNA binding | chr3:6611404-6613829 REVERSE
Match: At4G10110.1 score: 48.1 e-value: 2e-05 Identity: 31.03% Span: 258bp (15.2%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr4:6309602-6310805 REVERSE
Match: At3G06970.1 score: 47.8 e-value: 2e-05 Identity: 32.1% Span: 243bp (14.3%) Frame: 3
RNA binding | chr3:2199659-2201156 REVERSE
Match: At1G73530.1 score: 47.8 e-value: 2e-05 Identity: 25% Span: 276bp (16.3%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr1:27647462-27649047 REVERSE
Match: At3G52380.1 score: 47.4 e-value: 3e-05 Identity: 28% Span: 225bp (13.3%) Frame: 3
Symbols: PDE322, CP33 | CP33 (PIGMENT DEFECTIVE 322); RNA binding | chr3:19432597-19433833 FORWARD
Match: At3G52660.2 score: 46.6 e-value: 5e-05 Identity: 24.48% Span: 348bp (20.5%) Frame: 3
RNA binding | chr3:19533576-19535713 FORWARD
Match: At3G52660.1 score: 46.6 e-value: 5e-05 Identity: 24.48% Span: 348bp (20.5%) Frame: 3
RNA recognition motif (RRM)-containing protein | chr3:19533576-19535713 FORWARD

126 lower scoring hits censored -- only 100 best hits are stored.
genbank/nr [blastx] Showing best 100 hits recorded
Match: gi|22330574|ref|NP_177325.2| score: 272 e-value: 4e-71 Identity: 44.62% Span: 1224bp (72.2%) Frame: 3
cleavage stimulation factor, putative [Arabidopsis thaliana] >gi7239507|gb|AAF43233.1|AC012654_17 Contains similarity...
Match: gi|21591633|gb|AAM64164.1| score: 272 e-value: 4e-71 Identity: 44.39% Span: 1224bp (72.2%) Frame: 3
gi|21591633|gb|AAM64164.1| cleavage stimulation factor 64 [Arabidopsis thaliana]
Match: gi|77548917|gb|ABA91714.1| score: 265 e-value: 7e-69 Identity: 42.29% Span: 1215bp (71.6%) Frame: 3
gi|77548917|gb|ABA91714.1| RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Oryza sativa (japonica ...
Match: gi|54638266|gb|EAL27668.1| score: 140 e-value: 1e-31 Identity: 30.09% Span: 1212bp (71.5%) Frame: 3
gi|54638266|gb|EAL27668.1| GA20525-PA [Drosophila pseudoobscura]
Match: gi|53128673|emb|CAG31323.1| score: 137 e-value: 2e-30 Identity: 40.38% Span: 636bp (37.5%) Frame: 3
gi|53128673|emb|CAG31323.1| hypothetical protein [Gallus gallus] >gi|57530169|ref|NP_001006433.1| cleavage stimulatio...
Match: gi|51258747|gb|AAH80037.1| score: 137 e-value: 2e-30 Identity: 40.38% Span: 636bp (37.5%) Frame: 3
gi|51258747|gb|AAH80037.1| Cstf-64-prov protein [Xenopus laevis]
Match: gi|632500|gb|AAB50269.1| score: 137 e-value: 2e-30 Identity: 40.38% Span: 636bp (37.5%) Frame: 3
gi|632500|gb|AAB50269.1| polyadenylation factor 64 kDa subunit
Match: gi|27735464|gb|AAH41291.1| score: 137 e-value: 2e-30 Identity: 40.38% Span: 636bp (37.5%) Frame: 3
gi|27735464|gb|AAH41291.1| Cstf-64-prov protein [Xenopus laevis]
Match: gi|28557621|gb|AAO45216.1| score: 136 e-value: 4e-30 Identity: 29.82% Span: 1212bp (71.5%) Frame: 3
gi|28557621|gb|AAO45216.1| RE27227p [Drosophila melanogaster]
Match: gi|17137710|ref|NP_477453.1| score: 136 e-value: 4e-30 Identity: 29.82% Span: 1212bp (71.5%) Frame: 3
gi|17137710|ref|NP_477453.1| Cleavage stimulation factor 64 kilodalton subunit CG7697-PA [Drosophila melanogaster] gi...
Match: gi|13752575|ref|NP_112539.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
gi|13752575|ref|NP_112539.1| cleavage stimulation factor, 3' pre-RNA subunit 2, tau; cleavage stimulation factor, 3' ...
Match: gi|73996051|ref|XP_543585.2| score: 134 e-value: 1e-29 Identity: 41.9% Span: 624bp (36.8%) Frame: 3
gi|73996051|ref|XP_543585.2| PREDICTED: similar to cleavage stimulation factor, 3 pre-RNA subunit 2, tau [Canis famil...
Match: gi|109089783|ref|XP_001099568.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
PREDICTED:
Match: gi|109089779|ref|XP_001099669.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
PREDICTED:
Match: gi|109463762|ref|XP_001080434.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
PREDICTED:
Match: gi|109512323|ref|XP_001068092.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
PREDICTED:
Match: gi|14149675|ref|NP_056050.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
gi|14149675|ref|NP_056050.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant [Homo sapiens] gi...
Match: gi|4557493|ref|NP_001316.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|4557493|ref|NP_001316.1| cleavage stimulation factor subunit 2 [Homo sapiens] gi|461847|sp|P33240|CST2_HUMAN Cleav...
Match: gi|26341156|dbj|BAC34240.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
gi|26341156|dbj|BAC34240.1| unnamed protein product [Mus musculus]
Match: gi|109131505|ref|XP_001089558.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
PREDICTED:
Match: gi|74007932|ref|XP_861513.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|74007932|ref|XP_861513.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 9 [Canis familiaris]
Match: gi|55726993|emb|CAH90254.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|55726993|emb|CAH90254.1| hypothetical protein [Pongo pygmaeus] >gi|71153230|sp|Q5RDA3|CSTF2_PONPY Cleavage stimula...
Match: gi|26351239|dbj|BAC39256.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
gi|26351239|dbj|BAC39256.1| unnamed protein product [Mus musculus]
Match: gi|11139720|gb|AAG31814.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
polyadenylation
Match: gi|50510589|dbj|BAD32280.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
gi|50510589|dbj|BAD32280.1| mKIAA0689 protein [Mus musculus]
Match: gi|20380061|gb|AAH28239.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
gi|20380061|gb|AAH28239.1| Cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant [Homo sapiens]
Match: gi|26328597|dbj|BAC28037.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|26328597|dbj|BAC28037.1| unnamed protein product [Mus musculus]
Match: gi|74007928|ref|XP_861450.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|74007928|ref|XP_861450.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 7 [Canis familiaris]
Match: gi|74007930|ref|XP_861476.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|74007930|ref|XP_861476.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 8 [Canis familiaris]
Match: gi|26330250|dbj|BAC28855.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
gi|26330250|dbj|BAC28855.1| unnamed protein product [Mus musculus] gi|26350087|dbj|BAC38683.1| unnamed protein produc...
Match: gi|109089777|ref|XP_001099871.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
PREDICTED:
Match: gi|22478042|gb|AAH36719.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|22478042|gb|AAH36719.1| Unknown (protein for MGC:36412) [Mus musculus]
Match: gi|88682979|gb|AAI05553.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
Unknown
Match: gi|74007938|ref|XP_850506.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|74007938|ref|XP_850506.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 3 [Canis familiaris]
Match: gi|24416593|gb|AAN05427.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|24416593|gb|AAN05427.1| CstF-64 [Bos taurus] >gi|27807239|ref|NP_777110.1| cleavage stimulation factor, 3' pre-RNA...
Match: gi|74007924|ref|XP_861405.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|74007924|ref|XP_861405.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 5 [Canis familiaris]
Match: gi|74007936|ref|XP_549135.2| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|74007936|ref|XP_549135.2| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 2 [Canis familiaris]
Match: gi|74007934|ref|XP_861538.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|74007934|ref|XP_861538.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 10 [Canis familiaris]
Match: gi|21619877|gb|AAH33135.1| score: 134 e-value: 2e-29 Identity: 39.91% Span: 636bp (37.5%) Frame: 3
gi|21619877|gb|AAH33135.1| Similar to cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kD [Homo sapiens]
Match: gi|20072518|gb|AAH26995.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
gi|20072518|gb|AAH26995.1| Cstf2t-pending protein [Mus musculus]
Match: gi|109089781|ref|XP_001099766.1| score: 134 e-value: 1e-29 Identity: 41.43% Span: 624bp (36.8%) Frame: 3
PREDICTED:
Match: gi|47225344|emb|CAG09844.1| score: 132 e-value: 4e-29 Identity: 31.18% Span: 969bp (57.1%) Frame: 3
gi|47225344|emb|CAG09844.1| unnamed protein product [Tetraodon nigroviridis]
Match: gi|62896707|dbj|BAD96294.1| score: 132 e-value: 5e-29 Identity: 40.95% Span: 624bp (36.8%) Frame: 3
gi|62896707|dbj|BAD96294.1| cleavage stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant variant [Homo sapi...
Match: gi|102269210|gb|ABF55966.2| score: 130 e-value: 3e-28 Identity: 40.09% Span: 636bp (37.5%) Frame: 3
cleavage
Match: gi|34810648|pdb|1P1T|A score: 129 e-value: 4e-28 Identity: 66.33% Span: 294bp (17.3%) Frame: 3
gi|34810648|pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage Stimulation Factor 64 Kda Subunit
Match: gi|55633831|ref|XP_507793.1| score: 129 e-value: 4e-28 Identity: 41.26% Span: 612bp (36.1%) Frame: 3
gi|55633831|ref|XP_507793.1| PREDICTED: similar to variant polyadenylation protein CSTF-64 [Pan troglodytes]
Match: gi|41107668|gb|AAH65442.1| score: 129 e-value: 3e-28 Identity: 38.97% Span: 636bp (37.5%) Frame: 3
gi|41107668|gb|AAH65442.1| Unknown (protein for MGC:77730) [Danio rerio]
Match: gi|74007922|ref|XP_861380.1| score: 129 e-value: 4e-28 Identity: 66.33% Span: 294bp (17.3%) Frame: 3
gi|74007922|ref|XP_861380.1| PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 4 [Canis familiaris]
Match: gi|91094479|ref|XP_970762.1| score: 128 e-value: 7e-28 Identity: 38.21% Span: 636bp (37.5%) Frame: 3
PREDICTED:
Match: gi|57209950|emb|CAI42681.1| score: 125 e-value: 6e-27 Identity: 39.02% Span: 612bp (36.1%) Frame: 3
cleavage
Match: gi|55663778|ref|XP_529072.1| score: 125 e-value: 6e-27 Identity: 39.02% Span: 612bp (36.1%) Frame: 3
PREDICTED:
Match: gi|72082280|ref|XP_796096.1| score: 125 e-value: 8e-27 Identity: 36.49% Span: 633bp (37.3%) Frame: 3
PREDICTED:
Match: gi|66516308|ref|XP_623321.1| score: 124 e-value: 2e-26 Identity: 70.93% Span: 258bp (15.2%) Frame: 3
PREDICTED:
Match: gi|108869641|gb|EAT33866.1| score: 123 e-value: 3e-26 Identity: 29.58% Span: 1212bp (71.5%) Frame: 3
RNA-binding
Match: gi|88185880|gb|EAQ93348.1| score: 122 e-value: 4e-26 Identity: 35.94% Span: 645bp (38.0%) Frame: 3
hypothetical
Match: gi|57229205|gb|AAW45639.1| score: 122 e-value: 5e-26 Identity: 27.91% Span: 1197bp (70.6%) Frame: 3
polyadenylation
Match: gi|7708595|emb|CAB90143.1| score: 121 e-value: 9e-26 Identity: 27.85% Span: 1194bp (70.4%) Frame: 3
SPAC644.16
Match: gi|50256721|gb|EAL19442.1| score: 120 e-value: 3e-25 Identity: 27.69% Span: 1197bp (70.6%) Frame: 3
hypothetical
Match: gi|46105484|ref|XP_380546.1| score: 120 e-value: 3e-25 Identity: 34.4% Span: 645bp (38.0%) Frame: 3
gi|46105484|ref|XP_380546.1| hypothetical protein FG00370.1 [Gibberella zeae PH-1] >gi|42546787|gb|EAA69630.1| hypoth...
Match: gi|21293399|gb|EAA05544.1| score: 117 e-value: 2e-24 Identity: 67.44% Span: 258bp (15.2%) Frame: 3
ENSANGP00000012477
Match: gi|55240783|gb|EAA09129.2| score: 115 e-value: 8e-24 Identity: 68.6% Span: 258bp (15.2%) Frame: 3
gi|55240783|gb|EAA09129.2| ENSANGP00000003770 [Anopheles gambiae str. PEST] >gi|58385078|ref|XP_313699.2| ENSANGP0000...
Match: gi|111068296|gb|EAT89416.1| score: 111 e-value: 1e-22 Identity: 25.74% Span: 1224bp (72.2%) Frame: 3
hypothetical
Match: gi|83775111|dbj|BAE65234.1| score: 110 e-value: 2e-22 Identity: 30.53% Span: 849bp (50.1%) Frame: 3
unnamed
Match: gi|71017595|ref|XP_759028.1| score: 108 e-value: 1e-21 Identity: 61.36% Span: 264bp (15.6%) Frame: 3
gi|71017595|ref|XP_759028.1| hypothetical protein UM02881.1 [Ustilago maydis 521] >gi|46098750|gb|EAK83983.1| hypothe...
Match: gi|39964821|ref|XP_365040.1| score: 108 e-value: 8e-22 Identity: 33.94% Span: 663bp (39.1%) Frame: 3
gi|39964821|ref|XP_365040.1| hypothetical protein MG09885.4 [Magnaporthe grisea 70-15]
Match: gi|90306038|gb|EAS35669.1| score: 103 e-value: 3e-20 Identity: 31.65% Span: 639bp (37.7%) Frame: 3
hypothetical
Match: gi|66362022|ref|XP_627975.1| score: 103 e-value: 2e-20 Identity: 30.52% Span: 618bp (36.4%) Frame: 3
cleavage
Match: gi|71001126|ref|XP_755244.1| score: 102 e-value: 4e-20 Identity: 32.42% Span: 639bp (37.7%) Frame: 3
polyadenylation
Match: gi|66814070|ref|XP_641214.1| score: 102 e-value: 7e-20 Identity: 29.83% Span: 633bp (37.3%) Frame: 3
hypothetical
Match: gi|24416589|gb|AAN05428.1| score: 101 e-value: 1e-19 Identity: 37.5% Span: 546bp (32.2%) Frame: 3
gi|24416589|gb|AAN05428.1| tCstF-64 [Bos taurus]
Match: gi|50552626|ref|XP_503723.1| score: 98.2 e-value: 1e-18 Identity: 43.31% Span: 351bp (20.7%) Frame: 3
hypothetical
Match: gi|67539808|ref|XP_663678.1| score: 97.1 e-value: 2e-18 Identity: 27.72% Span: 837bp (49.4%) Frame: 3
hypothetical
Match: gi|19113461|ref|NP_596669.1| score: 94 e-value: 2e-17 Identity: 51.16% Span: 258bp (15.2%) Frame: 3
gi|19113461|ref|NP_596669.1| putative polyadenylation factor [Schizosaccharomyces pombe] gi|15213955|sp|O43040|CTF1_S...
Match: gi|49524980|emb|CAG58586.1| score: 92.4 e-value: 6e-17 Identity: 47.06% Span: 255bp (15.0%) Frame: 3
unnamed
Match: gi|39583263|emb|CAE60055.1| score: 92 e-value: 8e-17 Identity: 50% Span: 306bp (18.0%) Frame: 3
gi|39583263|emb|CAE60055.1| Hypothetical protein CBG03568 [Caenorhabditis briggsae]
Match: gi|17553656|ref|NP_499734.1| score: 91.7 e-value: 1e-16 Identity: 51.69% Span: 267bp (15.7%) Frame: 3
gi|17553656|ref|NP_499734.1| cleavage and Polyadenylation Factor (cpf-2) [Caenorhabditis elegans] gi|7504374|pir||T22...
Match: gi|6321394|ref|NP_011471.1| score: 91.3 e-value: 1e-16 Identity: 43.33% Span: 270bp (15.9%) Frame: 3
gi|6321394|ref|NP_011471.1| Protein with a role in mRNA stability and/or poly(A) tail length; Rna15p [Saccharomyces c...
Match: gi|44985888|gb|AAS54499.1| score: 89.4 e-value: 5e-16 Identity: 26.57% Span: 621bp (36.6%) Frame: 3
AGR010Cp
Match: gi|92429673|gb|ABE77206.1| score: 89 e-value: 6e-16 Identity: 55.13% Span: 234bp (13.8%) Frame: 3
unknown
Match: gi|50310969|ref|XP_455507.1| score: 87.4 e-value: 2e-15 Identity: 35.16% Span: 351bp (20.7%) Frame: 3
unnamed
Match: gi|49653981|emb|CAG86393.1| score: 86.7 e-value: 3e-15 Identity: 28.57% Span: 648bp (38.2%) Frame: 3
unnamed
Match: gi|28279277|gb|AAH46091.1| score: 86.3 e-value: 4e-15 Identity: 60.53% Span: 219bp (12.9%) Frame: 3
gi|28279277|gb|AAH46091.1| Unknown (protein for MGC:56346) [Danio rerio]
Match: gi|67624289|ref|XP_668427.1| score: 82.4 e-value: 6e-14 Identity: 29.02% Span: 558bp (32.9%) Frame: 3
cleavage
Match: gi|52076962|dbj|BAD45972.1| score: 81.3 e-value: 1e-13 Identity: 46.23% Span: 315bp (18.6%) Frame: 3
hypothetical
Match: gi|70952960|ref|XP_745612.1| score: 78.2 e-value: 1e-12 Identity: 40.66% Span: 273bp (16.1%) Frame: 3
mRNA
Match: gi|1813684|gb|AAC47624.1| score: 78.2 e-value: 1e-12 Identity: 49.35% Span: 231bp (13.6%) Frame: 3
gi|1813684|gb|AAC47624.1| putative RNA binding protein [Brugia malayi]
Match: gi|68066518|ref|XP_675235.1| score: 77 e-value: 3e-12 Identity: 39.56% Span: 273bp (16.1%) Frame: 3
mRNA
Match: gi|19173364|ref|NP_597167.1| score: 76.6 e-value: 3e-12 Identity: 45.26% Span: 279bp (16.5%) Frame: 3
gi|19173364|ref|NP_597167.1| CLEAVAGE STIMULATION FACTOR [Encephalitozoon cuniculi] gi|19170953|emb|CAD26343.1| CLEAV...
Match: gi|23505226|emb|CAD52006.1| score: 76.3 e-value: 4e-12 Identity: 41.76% Span: 273bp (16.1%) Frame: 3
mRNA
Match: gi|83314770|ref|XP_730505.1| score: 75.9 e-value: 6e-12 Identity: 39.56% Span: 273bp (16.1%) Frame: 3
hypothetical
Match: gi|50919515|ref|XP_470149.1| score: 75.9 e-value: 6e-12 Identity: 43.18% Span: 264bp (15.6%) Frame: 3
putative
Match: gi|39580208|emb|CAE71715.1| score: 74.7 e-value: 1e-11 Identity: 44.87% Span: 234bp (13.8%) Frame: 3
gi|39580208|emb|CAE71715.1| Hypothetical protein CBG18692 [Caenorhabditis briggsae]
Match: gi|68486329|ref|XP_712963.1| score: 74.3 e-value: 2e-11 Identity: 26.48% Span: 654bp (38.6%) Frame: 3
hypothetical
Match: gi|39580202|emb|CAE71709.1| score: 73.6 e-value: 3e-11 Identity: 46.25% Span: 240bp (14.2%) Frame: 3
gi|39580202|emb|CAE71709.1| Hypothetical protein CBG18686 [Caenorhabditis briggsae]
Match: gi|3878851|emb|CAB03222.1| score: 72.8 e-value: 5e-11 Identity: 46.25% Span: 240bp (14.2%) Frame: 3
Hypothetical
Match: gi|111279992|gb|EAT93691.1| score: 70.9 e-value: 2e-10 Identity: 43.01% Span: 279bp (16.5%) Frame: 3
RNA-binding
Match: gi|39580200|emb|CAE71707.1| score: 70.9 e-value: 2e-10 Identity: 42.11% Span: 228bp (13.4%) Frame: 3
gi|39580200|emb|CAE71707.1| Hypothetical protein CBG18684 [Caenorhabditis briggsae]
Match: gi|47156973|gb|AAT12351.1| score: 70.5 e-value: 2e-10 Identity: 44.3% Span: 237bp (14.0%) Frame: 3
cleavage
Match: gi|20071694|gb|AAH26976.1| score: 70.1 e-value: 3e-10 Identity: 41.56% Span: 231bp (13.6%) Frame: 3
RNA
Match: gi|46450255|gb|AAS96903.1| score: 70.1 e-value: 3e-10 Identity: 45.45% Span: 231bp (13.6%) Frame: 3
RNA-binding

174 lower scoring hits censored -- only 100 best hits are stored.