| genbank/nr [blastx] | Showing best 86 hits recorded |
| Match: gi|157341482|emb|CAO62037.1| |
score: 179 |
e-value: 8e-43 |
Identity: 89.8% |
Span: 294bp (18.0%) |
Frame: 1 |
| unnamed |
| Match: gi|118484411|gb|ABK94082.1| |
score: 175 |
e-value: 1e-41 |
Identity: 86.73% |
Span: 294bp (18.0%) |
Frame: 1 |
| unknown |
| Match: gi|115465821|ref|NP_001056510.1| |
score: 170 |
e-value: 4e-40 |
Identity: 85.57% |
Span: 291bp (17.8%) |
Frame: 1 |
| Os05g0594900 [Oryza sativa (japonica cultivar-group)] >gi55733874|gb|AAV59381.1| unknown protein [Oryza sativa Japoni... |
| Match: gi|194699348|gb|ACF83758.1| |
score: 169 |
e-value: 9e-40 |
Identity: 86.6% |
Span: 291bp (17.8%) |
Frame: 1 |
| unknown |
| Match: gi|15218779|ref|NP_176747.1| |
score: 168 |
e-value: 1e-39 |
Identity: 84.69% |
Span: 294bp (18.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi79320777... |
| Match: gi|168040498|ref|XP_001772731.1| |
score: 166 |
e-value: 4e-39 |
Identity: 84.69% |
Span: 294bp (18.0%) |
Frame: 1 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162675956|gb|EDQ62445.1| predicted protein [Physcomitrella... |
| Match: gi|116783050|gb|ABK22776.1| |
score: 166 |
e-value: 7e-39 |
Identity: 86.02% |
Span: 279bp (17.1%) |
Frame: 1 |
| unknown [Picea sitchensis] >gi116791884|gb|ABK26147.1| unknown [Picea sitchensis] >gi|148908711|gb|ABR17463.1| unknow... |
| Match: gi|6686407|gb|AAF23841.1|AC007234_13 |
score: 154 |
e-value: 3e-35 |
Identity: 82.98% |
Span: 282bp (17.3%) |
Frame: 1 |
| F1E22.8 [Arabidopsis thaliana] |
| Match: gi|218197373|gb|EEC79800.1| |
score: 152 |
e-value: 7e-35 |
Identity: 62.69% |
Span: 291bp (17.8%) |
Frame: 1 |
| hypothetical protein OsI_21233 [Oryza sativa Indica Group] |
| Match: gi|125595436|gb|EAZ35495.1| |
score: 148 |
e-value: 1e-33 |
Identity: 58.99% |
Span: 291bp (17.8%) |
Frame: 1 |
| hypothetical |
| Match: gi|219431537|ref|XP_002213554.1| |
score: 137 |
e-value: 4e-30 |
Identity: 69.57% |
Span: 276bp (16.9%) |
Frame: 1 |
| hypothetical |
| Match: gi|66533783|ref|XP_624537.1| |
score: 136 |
e-value: 6e-30 |
Identity: 64.52% |
Span: 279bp (17.1%) |
Frame: 1 |
| PREDICTED: similar to CG2021-PA [Apis mellifera] |
| Match: gi|212513379|gb|EEB15970.1| |
score: 136 |
e-value: 6e-30 |
Identity: 66.67% |
Span: 279bp (17.1%) |
Frame: 1 |
| lsm1, |
| Match: gi|156551834|ref|XP_001604291.1| |
score: 135 |
e-value: 8e-30 |
Identity: 65.59% |
Span: 279bp (17.1%) |
Frame: 1 |
| PREDICTED: similar to CG2021-PA [Nasonia vitripennis] |
| Match: gi|170060880|ref|XP_001865997.1| |
score: 133 |
e-value: 5e-29 |
Identity: 64.52% |
Span: 279bp (17.1%) |
Frame: 1 |
| LSM8 protein [Culex quinquefasciatus] >gi167879234|gb|EDS42617.1| LSM8 protein [Culex quinquefasciatus] |
| Match: gi|31240533|ref|XP_320680.1| |
score: 132 |
e-value: 7e-29 |
Identity: 65.59% |
Span: 279bp (17.1%) |
Frame: 1 |
| AGAP011837-PA [Anopheles gambiae str. PEST] >gi21288006|gb|EAA00327.1| AGAP011837-PA [Anopheles gambiae str. PEST] |
| Match: gi|157104024|ref|XP_001648223.1| |
score: 132 |
e-value: 7e-29 |
Identity: 65.59% |
Span: 279bp (17.1%) |
Frame: 1 |
| small nuclear ribonucleoprotein, core, putative [Aedes aegypti] >gi108880439|gb|EAT44664.1| small nuclear ribonucleop... |
| Match: gi|213513122|ref|NP_001135313.1| |
score: 132 |
e-value: 9e-29 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm8 [Salmo salar] >gi209731702|gb|ACI66720.1| U6 snRNA-associated Sm-like protei... |
| Match: gi|209733618|gb|ACI67678.1| |
score: 131 |
e-value: 2e-28 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm8 [Salmo salar] |
| Match: gi|209736546|gb|ACI69142.1| |
score: 131 |
e-value: 2e-28 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm8 [Salmo salar] |
| Match: gi|68358714|ref|XP_694374.1| |
score: 130 |
e-value: 3e-28 |
Identity: 63.04% |
Span: 276bp (16.9%) |
Frame: 1 |
| gi|68358714|ref|XP_694374.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8 [Danio rerio] |
| Match: gi|118082191|ref|XP_416009.2| |
score: 129 |
e-value: 6e-28 |
Identity: 63.04% |
Span: 276bp (16.9%) |
Frame: 1 |
| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8 [Gallus gallus] |
| Match: gi|209738386|gb|ACI70062.1| |
score: 129 |
e-value: 8e-28 |
Identity: 60.87% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 |
| Match: gi|149638763|ref|XP_001516404.1| |
score: 128 |
e-value: 1e-27 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|209731758|gb|ACI66748.1| |
score: 128 |
e-value: 1e-27 |
Identity: 60.87% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 |
| Match: gi|109067976|ref|XP_001097050.1| |
score: 128 |
e-value: 2e-27 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|193716261|ref|XP_001944890.1| |
score: 128 |
e-value: 2e-27 |
Identity: 59.78% |
Span: 276bp (16.9%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|125976760|ref|XP_001352413.1| |
score: 128 |
e-value: 2e-27 |
Identity: 60.22% |
Span: 279bp (17.1%) |
Frame: 1 |
| GA15189-PA |
| Match: gi|109139334|gb|ABE96774.2| |
score: 128 |
e-value: 2e-27 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 |
| Match: gi|7706425|ref|NP_057284.1| |
score: 128 |
e-value: 2e-27 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| gi|7706425|ref|NP_057284.1| U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] gi|19527156|ref|NP_598700.1| U6 s... |
| Match: gi|209731736|gb|ACI66737.1| |
score: 128 |
e-value: 1e-27 |
Identity: 60.87% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 |
| Match: gi|24655606|ref|NP_647660.1| |
score: 128 |
e-value: 2e-27 |
Identity: 60.22% |
Span: 279bp (17.1%) |
Frame: 1 |
| gi|24655606|ref|NP_647660.1| CG2021-PA [Drosophila melanogaster] gi|7292155|gb|AAF47567.1| CG2021-PA [Drosophila mela... |
| Match: gi|170585854|ref|XP_001897697.1| |
score: 127 |
e-value: 4e-27 |
Identity: 63.33% |
Span: 270bp (16.5%) |
Frame: 1 |
| U6 |
| Match: gi|147904722|ref|NP_001084715.1| |
score: 127 |
e-value: 4e-27 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| hypothetical |
| Match: gi|170041123|ref|XP_001848324.1| |
score: 127 |
e-value: 4e-27 |
Identity: 63.33% |
Span: 270bp (16.5%) |
Frame: 1 |
| conserved |
| Match: gi|195403403|ref|XP_002060279.1| |
score: 126 |
e-value: 5e-27 |
Identity: 59.14% |
Span: 279bp (17.1%) |
Frame: 1 |
| GJ16072 |
| Match: gi|91084979|ref|XP_972279.1| |
score: 126 |
e-value: 7e-27 |
Identity: 58.06% |
Span: 279bp (17.1%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|47210706|emb|CAF89998.1| |
score: 125 |
e-value: 1e-26 |
Identity: 60% |
Span: 276bp (16.9%) |
Frame: 1 |
| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|195125357|ref|XP_002007145.1| |
score: 125 |
e-value: 9e-27 |
Identity: 58.06% |
Span: 279bp (17.1%) |
Frame: 1 |
| GI12774 |
| Match: gi|215499297|gb|EEC08791.1| |
score: 125 |
e-value: 1e-26 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| small |
| Match: gi|109077418|ref|XP_001087356.1| |
score: 125 |
e-value: 9e-27 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|121543869|gb|ABM55599.1| |
score: 125 |
e-value: 1e-26 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein [Maconellicoccus hirsutus] |
| Match: gi|195011534|ref|XP_001983196.1| |
score: 124 |
e-value: 2e-26 |
Identity: 58.06% |
Span: 279bp (17.1%) |
Frame: 1 |
| GH15765 |
| Match: gi|195435808|ref|XP_002065871.1| |
score: 124 |
e-value: 2e-26 |
Identity: 59.14% |
Span: 279bp (17.1%) |
Frame: 1 |
| GK20525 |
| Match: gi|156405763|ref|XP_001640901.1| |
score: 123 |
e-value: 4e-26 |
Identity: 60.87% |
Span: 276bp (16.9%) |
Frame: 1 |
| predicted |
| Match: gi|198428544|ref|XP_002121997.1| |
score: 123 |
e-value: 4e-26 |
Identity: 60.87% |
Span: 276bp (16.9%) |
Frame: 1 |
| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8 [Ciona intestinalis] |
| Match: gi|114615623|ref|XP_001141412.1| |
score: 122 |
e-value: 7e-26 |
Identity: 64.71% |
Span: 255bp (15.6%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|196004032|ref|XP_002111883.1| |
score: 117 |
e-value: 3e-24 |
Identity: 61.9% |
Span: 252bp (15.4%) |
Frame: 1 |
| hypothetical |
| Match: gi|211963559|gb|EEA98754.1| |
score: 115 |
e-value: 9e-24 |
Identity: 56.52% |
Span: 276bp (16.9%) |
Frame: 1 |
| small |
| Match: gi|112253325|gb|ABI14250.1| |
score: 115 |
e-value: 1e-23 |
Identity: 65% |
Span: 240bp (14.7%) |
Frame: 1 |
| Sm-like |
| Match: gi|145349245|ref|XP_001419048.1| |
score: 114 |
e-value: 2e-23 |
Identity: 57.78% |
Span: 270bp (16.5%) |
Frame: 1 |
| predicted |
| Match: gi|119603941|gb|EAW83535.1| |
score: 108 |
e-value: 2e-21 |
Identity: 64.86% |
Span: 222bp (13.6%) |
Frame: 1 |
| LSM8 |
| Match: gi|73976399|ref|XP_866219.1| |
score: 106 |
e-value: 7e-21 |
Identity: 61.84% |
Span: 228bp (14.0%) |
Frame: 1 |
| gi|73976399|ref|XP_866219.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm8 isoform 2 [Canis familiar... |
| Match: gi|157756667|ref|XP_001670677.1| |
score: 106 |
e-value: 7e-21 |
Identity: 50% |
Span: 270bp (16.5%) |
Frame: 1 |
| Hypothetical |
| Match: gi|167519032|ref|XP_001743856.1| |
score: 106 |
e-value: 7e-21 |
Identity: 48.91% |
Span: 276bp (16.9%) |
Frame: 1 |
| predicted |
| Match: gi|116059050|emb|CAL54757.1| |
score: 105 |
e-value: 2e-20 |
Identity: 50% |
Span: 285bp (17.5%) |
Frame: 1 |
| Small |
| Match: gi|17544148|ref|NP_500964.1| |
score: 105 |
e-value: 1e-20 |
Identity: 48.89% |
Span: 270bp (16.5%) |
Frame: 1 |
| gi|17544148|ref|NP_500964.1| u6 snRNA-associated Sm-like protein (lsm-8) [Caenorhabditis elegans] gi|15487631|gb|AAL0... |
| Match: gi|159473465|ref|XP_001694854.1| |
score: 104 |
e-value: 2e-20 |
Identity: 54.84% |
Span: 276bp (16.9%) |
Frame: 1 |
| Sm |
| Match: gi|169851696|ref|XP_001832537.1| |
score: 102 |
e-value: 1e-19 |
Identity: 50% |
Span: 270bp (16.5%) |
Frame: 1 |
| hypothetical |
| Match: gi|213404570|ref|XP_002173057.1| |
score: 101 |
e-value: 2e-19 |
Identity: 51.06% |
Span: 282bp (17.3%) |
Frame: 1 |
| U6 |
| Match: gi|111226386|ref|XP_001134524.1| |
score: 101 |
e-value: 2e-19 |
Identity: 46.74% |
Span: 276bp (16.9%) |
Frame: 1 |
| LSM |
| Match: gi|193807861|emb|CAQ38565.1| |
score: 100 |
e-value: 4e-19 |
Identity: 47.92% |
Span: 288bp (17.6%) |
Frame: 1 |
| u6 |
| Match: gi|156097675|ref|XP_001614870.1| |
score: 100 |
e-value: 4e-19 |
Identity: 47.92% |
Span: 288bp (17.6%) |
Frame: 1 |
| U6 |
| Match: gi|170100064|ref|XP_001881250.1| |
score: 100 |
e-value: 4e-19 |
Identity: 48.89% |
Span: 270bp (16.5%) |
Frame: 1 |
| predicted |
| Match: gi|58258887|ref|XP_566856.1| |
score: 99.8 |
e-value: 7e-19 |
Identity: 54.02% |
Span: 261bp (16.0%) |
Frame: 1 |
| u6 |
| Match: gi|124512200|ref|XP_001349233.1| |
score: 98.6 |
e-value: 1e-18 |
Identity: 48.94% |
Span: 282bp (17.3%) |
Frame: 1 |
| u6 |
| Match: gi|19076009|ref|NP_588509.1| |
score: 94 |
e-value: 4e-17 |
Identity: 42.55% |
Span: 282bp (17.3%) |
Frame: 1 |
| gi|19076009|ref|NP_588509.1| splicing factor [Schizosaccharomyces pombe] gi|7493429|pir||T41178 splicing factor - fis... |
| Match: gi|215461593|gb|EEB94634.1| |
score: 90.1 |
e-value: 5e-16 |
Identity: 39.25% |
Span: 270bp (16.5%) |
Frame: 1 |
| hypothetical |
| Match: gi|71027589|ref|XP_763438.1| |
score: 89 |
e-value: 1e-15 |
Identity: 48.91% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 |
| Match: gi|156083833|ref|XP_001609400.1| |
score: 85.1 |
e-value: 2e-14 |
Identity: 45.65% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 |
| Match: gi|219114825|ref|XP_002178208.1| |
score: 83.6 |
e-value: 5e-14 |
Identity: 53.52% |
Span: 207bp (12.7%) |
Frame: 1 |
| predicted |
| Match: gi|146168016|ref|XP_001470817.1| |
score: 82 |
e-value: 1e-13 |
Identity: 41.94% |
Span: 276bp (16.9%) |
Frame: 1 |
| conserved |
| Match: gi|50546088|ref|XP_500571.1| |
score: 80.9 |
e-value: 3e-13 |
Identity: 43.68% |
Span: 261bp (16.0%) |
Frame: 1 |
| gi|50546088|ref|XP_500571.1| hypothetical protein [Yarrowia lipolytica] >gi|49646437|emb|CAG82802.1| unnamed protein ... |
| Match: gi|115931275|ref|XP_001180253.1| |
score: 80.5 |
e-value: 4e-13 |
Identity: 54.79% |
Span: 219bp (13.4%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|115893482|ref|XP_001199475.1| |
score: 80.1 |
e-value: 5e-13 |
Identity: 55.56% |
Span: 216bp (13.2%) |
Frame: 1 |
| PREDICTED: |
| Match: gi|209586381|gb|ACI65066.1| |
score: 77.8 |
e-value: 3e-12 |
Identity: 37.76% |
Span: 273bp (16.7%) |
Frame: 1 |
| human |
| Match: gi|212542651|ref|XP_002151480.1| |
score: 77.4 |
e-value: 3e-12 |
Identity: 40.86% |
Span: 270bp (16.5%) |
Frame: 1 |
| small |
| Match: gi|209586029|gb|ACI64714.1| |
score: 77 |
e-value: 5e-12 |
Identity: 37.76% |
Span: 273bp (16.7%) |
Frame: 1 |
| human |
| Match: gi|218724913|gb|EED24330.1| |
score: 75.5 |
e-value: 1e-11 |
Identity: 37.63% |
Span: 270bp (16.5%) |
Frame: 1 |
| small |
| Match: gi|121701687|ref|XP_001269108.1| |
score: 75.1 |
e-value: 2e-11 |
Identity: 37.63% |
Span: 270bp (16.5%) |
Frame: 1 |
| small |
| Match: gi|119184377|ref|XP_001243108.1| |
score: 74.7 |
e-value: 2e-11 |
Identity: 37.63% |
Span: 270bp (16.5%) |
Frame: 1 |
| hypothetical |
| Match: gi|189205681|ref|XP_001939175.1| |
score: 74.3 |
e-value: 3e-11 |
Identity: 39.18% |
Span: 282bp (17.3%) |
Frame: 1 |
| conserved |
| Match: gi|145239729|ref|XP_001392511.1| |
score: 74.3 |
e-value: 3e-11 |
Identity: 37.63% |
Span: 270bp (16.5%) |
Frame: 1 |
| hypothetical |
| Match: gi|70995556|ref|XP_752533.1| |
score: 73.9 |
e-value: 4e-11 |
Identity: 37.63% |
Span: 270bp (16.5%) |
Frame: 1 |
| small |
| Match: gi|115491675|ref|XP_001210465.1| |
score: 73.2 |
e-value: 7e-11 |
Identity: 36.56% |
Span: 270bp (16.5%) |
Frame: 1 |
| conserved |
| Match: gi|154288024|ref|XP_001544807.1| |
score: 72.8 |
e-value: 9e-11 |
Identity: 39.76% |
Span: 240bp (14.7%) |
Frame: 1 |
| conserved |
|
| arabidopsis/peptide [blastx] | Showing best 2 hits recorded |
| Match: At1G65700.2 |
score: 168 |
e-value: 1e-41 |
Identity: 84.69% |
Span: 294bp (18.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | chr1:24438126-24439533 REVERSE |
| Match: At1G65700.1 |
score: 168 |
e-value: 1e-41 |
Identity: 84.69% |
Span: 294bp (18.0%) |
Frame: 1 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative | chr1:24438126-24439533 REVERSE |
|
| swissprot [blastx] | Showing best 6 hits recorded |
| Match: Q6ZWM4 |
score: 128 |
e-value: 1e-28 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm8 OS=Mus musculus GN=Lsm8 PE=2 SV=3 |
| Match: Q3ZCE0 |
score: 128 |
e-value: 1e-28 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm8 OS=Bos taurus GN=LSM8 PE=3 SV=3 |
| Match: O95777 |
score: 128 |
e-value: 1e-28 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm8 OS=Homo sapiens GN=LSM8 PE=1 SV=3 |
| Match: Q5RCP3 |
score: 128 |
e-value: 1e-28 |
Identity: 61.96% |
Span: 276bp (16.9%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm8 OS=Pongo abelii GN=LSM8 PE=3 SV=3 |
| Match: Q1ZXD5 |
score: 101 |
e-value: 1e-20 |
Identity: 46.74% |
Span: 276bp (16.9%) |
Frame: 1 |
| Probable U6 snRNA-associated Sm-like protein LSm8 OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1 |
| Match: O74483 |
score: 94 |
e-value: 2e-18 |
Identity: 42.55% |
Span: 282bp (17.3%) |
Frame: 1 |
| U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces pombe GN=lsm8 PE=1 SV=1 |
|
