| genbank/nr [blastx] | Showing best 60 hits recorded |
| Match: gi|48475146|gb|AAT44215.1| |
score: 170.2 |
e-value: 9.6e-41 |
Identity: 85.57% |
Span: 291bp (18.0%) |
Frame: 3 |
| gi|48475146|gb|AAT44215.1| unknown protein [Oryza sativa (japonica cultivar-group)] |
| Match: gi|15218779|ref|NP_176747.1| |
score: 168.3 |
e-value: 3.7e-40 |
Identity: 84.69% |
Span: 294bp (18.1%) |
Frame: 3 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi79320777... |
| Match: gi|25404943|pir||G96681 |
score: 154.1 |
e-value: 7.1e-36 |
Identity: 82.98% |
Span: 282bp (17.4%) |
Frame: 3 |
| gi|25404943|pir||G96681 protein F1E22.8 [imported] - Arabidopsis thaliana gi|6686407|gb|AAF23841.1| F1E22.8 [Arabidop... |
| Match: gi|31240533|ref|XP_320680.1| |
score: 132.9 |
e-value: 1.7e-29 |
Identity: 65.59% |
Span: 279bp (17.2%) |
Frame: 3 |
| AGAP011837-PA [Anopheles gambiae str. PEST] >gi21288006|gb|EAA00327.1| AGAP011837-PA [Anopheles gambiae str. PEST] |
| Match: gi|24655606|ref|NP_647660.1| |
score: 128.3 |
e-value: 4.2e-28 |
Identity: 60.22% |
Span: 279bp (17.2%) |
Frame: 3 |
| gi|24655606|ref|NP_647660.1| CG2021-PA [Drosophila melanogaster] gi|7292155|gb|AAF47567.1| CG2021-PA [Drosophila mela... |
| Match: gi|7706425|ref|NP_057284.1| |
score: 128.3 |
e-value: 4.2e-28 |
Identity: 61.96% |
Span: 276bp (17.0%) |
Frame: 3 |
| gi|7706425|ref|NP_057284.1| U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens] gi|19527156|ref|NP_598700.1| U6 s... |
| Match: gi|46329906|gb|AAH68881.1| |
score: 127.1 |
e-value: 9.4e-28 |
Identity: 61.96% |
Span: 276bp (17.0%) |
Frame: 3 |
| gi|46329906|gb|AAH68881.1| Unknown (protein for MGC:82379) [Xenopus laevis] |
| Match: gi|47210706|emb|CAF89998.1| |
score: 125.6 |
e-value: 2.7e-27 |
Identity: 60% |
Span: 276bp (17.0%) |
Frame: 3 |
| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|39584186|emb|CAE61561.1| |
score: 106.3 |
e-value: 1.7e-21 |
Identity: 50% |
Span: 270bp (16.7%) |
Frame: 3 |
| gi|39584186|emb|CAE61561.1| Hypothetical protein CBG05470 [Caenorhabditis briggsae] |
| Match: gi|17544148|ref|NP_500964.1| |
score: 105.5 |
e-value: 2.9e-21 |
Identity: 48.89% |
Span: 270bp (16.7%) |
Frame: 3 |
| gi|17544148|ref|NP_500964.1| u6 snRNA-associated Sm-like protein (lsm-8) [Caenorhabditis elegans] gi|15487631|gb|AAL0... |
| Match: gi|23612724|ref|NP_704263.1| |
score: 98.6 |
e-value: 3.6e-19 |
Identity: 48.94% |
Span: 282bp (17.4%) |
Frame: 3 |
| gi|23612724|ref|NP_704263.1| u6 snRNA-associated sm-like protein, putative [Plasmodium falciparum 3D7] gi|23499002|em... |
| Match: gi|28279736|gb|AAH45532.1| |
score: 95.13 |
e-value: 3.9e-18 |
Identity: 66.67% |
Span: 189bp (11.7%) |
Frame: 3 |
| gi|28279736|gb|AAH45532.1| LSM8 protein [Homo sapiens] |
| Match: gi|19076009|ref|NP_588509.1| |
score: 93.97 |
e-value: 8.8e-18 |
Identity: 42.55% |
Span: 282bp (17.4%) |
Frame: 3 |
| gi|19076009|ref|NP_588509.1| splicing factor [Schizosaccharomyces pombe] gi|7493429|pir||T41178 splicing factor - fis... |
| Match: gi|41581243|emb|CAE47892.1| |
score: 73.94 |
e-value: 9.4e-12 |
Identity: 37.63% |
Span: 270bp (16.7%) |
Frame: 3 |
| gi|41581243|emb|CAE47892.1| u6 snrna-associated sm-like protein, putative [Aspergillus fumigatus] |
| Match: gi|46438093|gb|EAK97429.1| |
score: 66.24 |
e-value: 2e-09 |
Identity: 37.08% |
Span: 252bp (15.6%) |
Frame: 3 |
| gi|46438093|gb|EAK97429.1| hypothetical protein CaO19.7290 [Candida albicans SC5314] |
| Match: gi|21537395|gb|AAM61736.1| |
score: 64.7 |
e-value: 5.7e-09 |
Identity: 39.77% |
Span: 264bp (16.3%) |
Frame: 3 |
| unknown [Arabidopsis thaliana] |
| Match: gi|18394697|ref|NP_564072.1| |
score: 64.31 |
e-value: 7.4e-09 |
Identity: 44.29% |
Span: 210bp (13.0%) |
Frame: 3 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi15724180... |
| Match: gi|46107166|ref|XP_380642.1| |
score: 63.93 |
e-value: 9.7e-09 |
Identity: 33.72% |
Span: 249bp (15.4%) |
Frame: 3 |
| gi|46107166|ref|XP_380642.1| hypothetical protein FG00466.1 [Gibberella zeae PH-1] >gi|42545636|gb|EAA68479.1| hypoth... |
| Match: gi|19112312|ref|NP_595520.1| |
score: 63.16 |
e-value: 1.7e-08 |
Identity: 34.78% |
Span: 270bp (16.7%) |
Frame: 3 |
| gi|19112312|ref|NP_595520.1| hypothetical protein [Schizosaccharomyces pombe] gi|3287944|sp|P87173|YB18_SCHPO Hypothe... |
| Match: gi|6322337|ref|NP_012411.1| |
score: 62.77 |
e-value: 2.2e-08 |
Identity: 41.25% |
Span: 237bp (14.6%) |
Frame: 3 |
| gi|6322337|ref|NP_012411.1| Like Sm protein; the finding that Lsm1 contains the Sm consensus motifs and most closely ... |
| Match: gi|18400270|ref|NP_566476.1| |
score: 62.39 |
e-value: 2.8e-08 |
Identity: 43.06% |
Span: 216bp (13.3%) |
Frame: 3 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi30682974... |
| Match: gi|38104169|gb|EAA50780.1| |
score: 62.39 |
e-value: 2.8e-08 |
Identity: 37.36% |
Span: 261bp (16.1%) |
Frame: 3 |
| gi|38104169|gb|EAA50780.1| hypothetical protein MG04539.4 [Magnaporthe grisea 70-15] |
| Match: gi|45198309|ref|NP_985338.1| |
score: 62 |
e-value: 3.7e-08 |
Identity: 40% |
Span: 237bp (14.6%) |
Frame: 3 |
| gi|45198309|ref|NP_985338.1| AFL212Cp [Eremothecium gossypii] >gi|44984196|gb|AAS53162.1| AFL212Cp [Eremothecium goss... |
| Match: gi|49072588|ref|XP_400583.1| |
score: 61.23 |
e-value: 6.3e-08 |
Identity: 34% |
Span: 300bp (18.5%) |
Frame: 3 |
| gi|49072588|ref|XP_400583.1| hypothetical protein UM02968.1 [Ustilago maydis 521] >gi|46098907|gb|EAK84140.1| hypothe... |
| Match: gi|24656769|ref|NP_611559.1| |
score: 59.69 |
e-value: 1.8e-07 |
Identity: 34.62% |
Span: 234bp (14.4%) |
Frame: 3 |
| gi|24656769|ref|NP_611559.1| CG4279-PA [Drosophila melanogaster] gi|7291257|gb|AAF46688.1| CG4279-PA [Drosophila mela... |
| Match: gi|46229842|gb|EAK90660.1| |
score: 59.69 |
e-value: 1.8e-07 |
Identity: 39.24% |
Span: 234bp (14.4%) |
Frame: 3 |
| gi|46229842|gb|EAK90660.1| similar to u6 snRNA-associated sm-like protein [Cryptosporidium parvum] |
| Match: gi|31241953|ref|XP_321407.1| |
score: 59.31 |
e-value: 2.4e-07 |
Identity: 35.9% |
Span: 234bp (14.4%) |
Frame: 3 |
| gi|31241953|ref|XP_321407.1| ENSANGP00000012242 [Anopheles gambiae] gi|21288607|gb|EAA00900.1| ENSANGP00000012242 [An... |
| Match: gi|9294633|dbj|BAB02972.1| |
score: 57.38 |
e-value: 9.1e-07 |
Identity: 45.16% |
Span: 186bp (11.5%) |
Frame: 3 |
| unnamed protein product [Arabidopsis thaliana] |
| Match: gi|20177947|sp|Q8VC85|LSM1_MOUSE |
score: 56.22 |
e-value: 2e-06 |
Identity: 30.77% |
Span: 234bp (14.4%) |
Frame: 3 |
| gi|20177947|sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 gi|18204794|gb|AAH21460.1| Lsm1 protein [Mu... |
| Match: gi|7657313|ref|NP_055277.1| |
score: 56.22 |
e-value: 2e-06 |
Identity: 30.77% |
Span: 234bp (14.4%) |
Frame: 3 |
| gi|7657313|ref|NP_055277.1| Lsm1 protein [Homo sapiens] gi|20177943|sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like ... |
| Match: gi|17533843|ref|NP_496385.1| |
score: 55.84 |
e-value: 2.6e-06 |
Identity: 32.53% |
Span: 249bp (15.4%) |
Frame: 3 |
| gi|17533843|ref|NP_496385.1| u6 snRNA-associated Sm-like protein (lsm-1) [Caenorhabditis elegans] gi|7503076|pir||T22... |
| Match: gi|46138721|ref|XP_391051.1| |
score: 55.45 |
e-value: 3.5e-06 |
Identity: 31.4% |
Span: 228bp (14.1%) |
Frame: 3 |
| gi|46138721|ref|XP_391051.1| hypothetical protein FG10875.1 [Gibberella zeae PH-1] >gi|42551485|gb|EAA74328.1| hypoth... |
| Match: gi|46226537|gb|EAK87525.1| |
score: 55.45 |
e-value: 3.5e-06 |
Identity: 37.66% |
Span: 231bp (14.3%) |
Frame: 3 |
| gi|46226537|gb|EAK87525.1| small nuclear ribonucleoprotein U6 [Cryptosporidium parvum] |
| Match: gi|34879178|ref|XP_344537.1| |
score: 55.07 |
e-value: 4.5e-06 |
Identity: 29.49% |
Span: 234bp (14.4%) |
Frame: 3 |
| gi|34879178|ref|XP_344537.1| similar to U6 snRNA-associated Sm-like protein LSm1 (Small nuclear ribonuclear CaSm) (Ca... |
| Match: gi|39597338|emb|CAE59566.1| |
score: 55.07 |
e-value: 4.5e-06 |
Identity: 32.53% |
Span: 249bp (15.4%) |
Frame: 3 |
| gi|39597338|emb|CAE59566.1| Hypothetical protein CBG02963 [Caenorhabditis briggsae] |
| Match: gi|38089163|ref|XP_357867.1| |
score: 54.68 |
e-value: 5.9e-06 |
Identity: 31.94% |
Span: 216bp (13.3%) |
Frame: 3 |
| gi|38089163|ref|XP_357867.1| similar to Lsm1 protein [Mus musculus] |
| Match: gi|38344547|emb|CAD40963.2| |
score: 54.3 |
e-value: 7.7e-06 |
Identity: 40.58% |
Span: 207bp (12.8%) |
Frame: 3 |
| OSJNBa0027P08.15 [Oryza sativa (japonica cultivar-group)] >gi116310232|emb|CAH67241.1| OSIGBa0140O07.9 [Oryza sativa ... |
| Match: gi|47209042|emb|CAF91744.1| |
score: 53.91 |
e-value: 1e-05 |
Identity: 35.29% |
Span: 204bp (12.6%) |
Frame: 3 |
| gi|47209042|emb|CAF91744.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|46130650|ref|XP_389105.1| |
score: 50.45 |
e-value: 0.00011 |
Identity: 36.11% |
Span: 216bp (13.3%) |
Frame: 3 |
| gi|46130650|ref|XP_389105.1| hypothetical protein FG08929.1 [Gibberella zeae PH-1] >gi|42548789|gb|EAA71632.1| hypoth... |
| Match: gi|47207638|emb|CAF90891.1| |
score: 50.45 |
e-value: 0.00011 |
Identity: 37.14% |
Span: 210bp (13.0%) |
Frame: 3 |
| gi|47207638|emb|CAF90891.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|19075840|ref|NP_588340.1| |
score: 50.06 |
e-value: 0.00015 |
Identity: 34.67% |
Span: 216bp (13.3%) |
Frame: 3 |
| gi|19075840|ref|NP_588340.1| putative snRNP splicing factor; with Sm domain [Schizosaccharomyces pombe] gi|7492993|pi... |
| Match: gi|19173671|ref|NP_597474.1| |
score: 49.68 |
e-value: 0.00019 |
Identity: 31.65% |
Span: 237bp (14.6%) |
Frame: 3 |
| gi|19173671|ref|NP_597474.1| U6 snRNA-ASSOCIATED SMALL RIBONUCLEOPROTEIN (Sm-LIKE PROTEIN) [Encephalitozoon cuniculi]... |
| Match: gi|4507133|ref|NP_003087.1| |
score: 49.29 |
e-value: 0.00025 |
Identity: 37.14% |
Span: 210bp (13.0%) |
Frame: 3 |
| gi|4507133|ref|NP_003087.1| small nuclear ribonucleoprotein polypeptide G [Homo sapiens] gi|13385994|ref|NP_080782.1|... |
| Match: gi|49071362|ref|XP_399970.1| |
score: 49.29 |
e-value: 0.00025 |
Identity: 37.84% |
Span: 216bp (13.3%) |
Frame: 3 |
| gi|49071362|ref|XP_399970.1| hypothetical protein UM02355.1 [Ustilago maydis 521] >gi|46098160|gb|EAK83393.1| hypothe... |
| Match: gi|31206519|ref|XP_312222.1| |
score: 48.14 |
e-value: 0.00055 |
Identity: 37.14% |
Span: 210bp (13.0%) |
Frame: 3 |
| gi|31206519|ref|XP_312222.1| ENSANGP00000010868 [Anopheles gambiae] gi|21295544|gb|EAA07689.1| ENSANGP00000010868 [An... |
| Match: gi|38100589|gb|EAA47695.1| |
score: 48.14 |
e-value: 0.00055 |
Identity: 31.94% |
Span: 216bp (13.3%) |
Frame: 3 |
| gi|38100589|gb|EAA47695.1| hypothetical protein MG02938.4 [Magnaporthe grisea 70-15] |
| Match: gi|49085588|ref|XP_404904.1| |
score: 47.75 |
e-value: 0.00072 |
Identity: 33.33% |
Span: 216bp (13.3%) |
Frame: 3 |
| gi|49085588|ref|XP_404904.1| hypothetical protein AN0767.2 [Aspergillus nidulans FGSC A4] >gi|40746253|gb|EAA65409.1|... |
| Match: gi|32420717|ref|XP_330802.1| |
score: 47.75 |
e-value: 0.00072 |
Identity: 32.86% |
Span: 210bp (13.0%) |
Frame: 3 |
| gi|32420717|ref|XP_330802.1| hypothetical protein [Neurospora crassa] gi|28920025|gb|EAA29411.1| hypothetical protein... |
| Match: gi|32417284|ref|XP_329120.1| |
score: 47.37 |
e-value: 0.001 |
Identity: 36.11% |
Span: 216bp (13.3%) |
Frame: 3 |
| gi|32417284|ref|XP_329120.1| hypothetical protein [Neurospora crassa] gi|28925881|gb|EAA34878.1| hypothetical protein... |
| Match: gi|49087384|ref|XP_405632.1| |
score: 46.98 |
e-value: 0.001 |
Identity: 30% |
Span: 210bp (13.0%) |
Frame: 3 |
| gi|49087384|ref|XP_405632.1| hypothetical protein AN1495.2 [Aspergillus nidulans FGSC A4] >gi|40744652|gb|EAA63808.1|... |
| Match: gi|46107748|ref|XP_380933.1| |
score: 46.98 |
e-value: 0.001 |
Identity: 31.43% |
Span: 210bp (13.0%) |
Frame: 3 |
| gi|46107748|ref|XP_380933.1| conserved hypothetical protein [Gibberella zeae PH-1] >gi|42547860|gb|EAA70703.1| conser... |
| Match: gi|46229816|gb|EAK90634.1| |
score: 46.98 |
e-value: 0.001 |
Identity: 42.86% |
Span: 168bp (10.4%) |
Frame: 3 |
| gi|46229816|gb|EAK90634.1| hypothetical protein cgd7_3520 [Cryptosporidium parvum] |
| Match: gi|39593669|emb|CAE61961.1| |
score: 46.21 |
e-value: 0.002 |
Identity: 37.18% |
Span: 222bp (13.7%) |
Frame: 3 |
| gi|39593669|emb|CAE61961.1| Hypothetical protein CBG05961 [Caenorhabditis briggsae] |
| Match: gi|17544592|ref|NP_502034.1| |
score: 46.21 |
e-value: 0.002 |
Identity: 37.18% |
Span: 222bp (13.7%) |
Frame: 3 |
| gi|17544592|ref|NP_502034.1| u6 snRNA-associated Sm-like protein (lsm-6) [Caenorhabditis elegans] gi|7511226|pir||T27... |
| Match: gi|15227722|ref|NP_178480.1| |
score: 45.82 |
e-value: 0.003 |
Identity: 36.84% |
Span: 216bp (13.3%) |
Frame: 3 |
| small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] >gi30678085... |
| Match: gi|49086412|ref|XP_405256.1| |
score: 45.44 |
e-value: 0.004 |
Identity: 34.43% |
Span: 174bp (10.7%) |
Frame: 3 |
| gi|49086412|ref|XP_405256.1| hypothetical protein AN1119.2 [Aspergillus nidulans FGSC A4] >gi|40747081|gb|EAA66237.1|... |
| Match: gi|38099604|gb|EAA46929.1| |
score: 45.44 |
e-value: 0.004 |
Identity: 28.57% |
Span: 210bp (13.0%) |
Frame: 3 |
| gi|38099604|gb|EAA46929.1| hypothetical protein MG10740.4 [Magnaporthe grisea 70-15] |
| Match: gi|6320867|ref|NP_010946.1| |
score: 45.05 |
e-value: 0.005 |
Identity: 36.26% |
Span: 219bp (13.5%) |
Frame: 3 |
| gi|6320867|ref|NP_010946.1| associated with U1, U2, U4, and U5 snRNPs as part of the Sm-core that is common to all sp... |
| Match: gi|15229773|ref|NP_187757.1| |
score: 44.67 |
e-value: 0.006 |
Identity: 34.29% |
Span: 210bp (13.0%) |
Frame: 3 |
| small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative [Arabidopsis thaliana] >gi12... |
| Match: gi|18860007|ref|NP_573139.1| |
score: 44.28 |
e-value: 0.008 |
Identity: 33.8% |
Span: 210bp (13.0%) |
Frame: 3 |
| gi|18860007|ref|NP_573139.1| CG9742-PA [Drosophila melanogaster] gi|29428065|sp|Q9VXE0|RUXG_DROME Probable small nucl... |
|
| arabidopsis/peptide [blastx] | Showing best 8 hits recorded |
| Match: At1g65700.1 |
score: 168.3 |
e-value: 9.4e-42 |
Identity: 84.69% |
Span: 294bp (18.1%) |
Frame: 3 |
| At1g65700.1 68408.m06836 small nuclear ribonucleo protein -related similar to small nuclear ribonucleoprotein SM G GI... |
| Match: At1g19120.1 |
score: 64.31 |
e-value: 1.9e-10 |
Identity: 44.29% |
Span: 210bp (13.0%) |
Frame: 3 |
| At1g19120.1 68408.m02146 expressed protein |
| Match: At3g14080.2 |
score: 62.39 |
e-value: 7.2e-10 |
Identity: 43.06% |
Span: 216bp (13.3%) |
Frame: 3 |
| At3g14080.2 68410.m06789 Sm protein -related similar to GB:AAB62189 from [Homo sapiens], contains Pfam profile: PF014... |
| Match: At3g14080.1 |
score: 62.39 |
e-value: 7.2e-10 |
Identity: 43.06% |
Span: 216bp (13.3%) |
Frame: 3 |
| At3g14080.1 68410.m06788 Sm protein -related similar to GB:AAB62189 from [Homo sapiens], contains Pfam profile: PF014... |
| Match: At2g03870.2 |
score: 45.82 |
e-value: 7e-05 |
Identity: 36.84% |
Span: 216bp (13.3%) |
Frame: 3 |
| At2g03870.2 68409.m05740 snRNP splicing factor -related |
| Match: At2g03870.1 |
score: 45.82 |
e-value: 7e-05 |
Identity: 36.84% |
Span: 216bp (13.3%) |
Frame: 3 |
| At2g03870.1 68409.m05739 snRNP splicing factor -related |
| Match: At3g11500.1 |
score: 44.67 |
e-value: 0.00016 |
Identity: 34.29% |
Span: 210bp (13.0%) |
Frame: 3 |
| At3g11500.1 68410.m01266 small nuclear ribonucleo protein polypeptide G -related similar to small nuclear ribonucleop... |
| Match: At2g23930.1 |
score: 43.13 |
e-value: 0.00045 |
Identity: 32.86% |
Span: 210bp (13.0%) |
Frame: 3 |
| At2g23930.1 68409.m02588 small nuclear ribonucleo protein E -related |
|
