| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|157360176|emb|CAO69365.1| |
score: 546 |
e-value: 3e-153 |
Identity: 67.01% |
Span: 1446bp (90.2%) |
Frame: 1 |
| unnamed |
| Match: gi|15237896|ref|NP_197800.1| |
score: 466 |
e-value: 2e-129 |
Identity: 58.86% |
Span: 1446bp (90.2%) |
Frame: 1 |
| SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor [Arabidopsis tha... |
| Match: gi|125553511|gb|EAY99220.1| |
score: 355 |
e-value: 6e-96 |
Identity: 46.71% |
Span: 1356bp (84.6%) |
Frame: 1 |
| hypothetical protein OsI_21178 [Oryza sativa Indica Group] |
| Match: gi|115465727|ref|NP_001056463.1| |
score: 354 |
e-value: 1e-95 |
Identity: 46.49% |
Span: 1356bp (84.6%) |
Frame: 1 |
| Os05g0586600 [Oryza sativa (japonica cultivar-group)] >gi30698488|dbj|BAC76601.1| Sig5 [Oryza sativa Japonica Group] ... |
| Match: gi|125595383|gb|EAZ35442.1| |
score: 352 |
e-value: 4e-95 |
Identity: 51.39% |
Span: 1173bp (73.2%) |
Frame: 1 |
| hypothetical |
| Match: gi|168029696|ref|XP_001767361.1| |
score: 202 |
e-value: 7e-50 |
Identity: 41.78% |
Span: 891bp (55.6%) |
Frame: 1 |
| plastid sigma factor SIG5 [Physcomitrella patens subsp. patens] >gi56603661|dbj|BAD80742.1| plastid sigma factor PpSI... |
| Match: gi|15010718|gb|AAK74018.1| |
score: 184 |
e-value: 2e-44 |
Identity: 47.4% |
Span: 840bp (52.4%) |
Frame: 1 |
| AT5g24120/MLE8_4 [Arabidopsis thaliana] |
| Match: gi|62320238|dbj|BAD94495.1| |
score: 166 |
e-value: 7e-39 |
Identity: 46.21% |
Span: 804bp (50.2%) |
Frame: 1 |
| sigma-like factor [Arabidopsis thaliana] |
| Match: gi|186687052|ref|YP_001870195.1| |
score: 125 |
e-value: 1e-26 |
Identity: 31.21% |
Span: 843bp (52.6%) |
Frame: 1 |
| RNA |
| Match: gi|16331222|ref|NP_441950.1| |
score: 121 |
e-value: 2e-25 |
Identity: 30.94% |
Span: 792bp (49.4%) |
Frame: 1 |
| gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434780|pir||S76042 transcri... |
| Match: gi|168009782|ref|XP_001757584.1| |
score: 121 |
e-value: 2e-25 |
Identity: 31.25% |
Span: 810bp (50.5%) |
Frame: 1 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162691278|gb|EDQ77641.1| predicted protein [Physcomitrella... |
| Match: gi|196191531|gb|EDX86495.1| |
score: 120 |
e-value: 3e-25 |
Identity: 29.43% |
Span: 843bp (52.6%) |
Frame: 1 |
| RNA |
| Match: gi|196254343|ref|ZP_03152882.1| |
score: 117 |
e-value: 4e-24 |
Identity: 32.2% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase, sigma 70 subunit, RpoD family [Cyanothece sp. PCC 7822] >gi196203540|gb|EDX98356.1| RNA polymerase, s... |
| Match: gi|196244885|ref|ZP_03143610.1| |
score: 117 |
e-value: 4e-24 |
Identity: 32.2% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA |
| Match: gi|218245044|ref|YP_002370415.1| |
score: 117 |
e-value: 4e-24 |
Identity: 32.2% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 8801] >gi257058068|ref|YP_003135956.1| RNA polym... |
| Match: gi|168009564|ref|XP_001757475.1| |
score: 117 |
e-value: 3e-24 |
Identity: 32.34% |
Span: 789bp (49.2%) |
Frame: 1 |
| predicted protein [Physcomitrella patens subsp. patens] >gi162691169|gb|EDQ77532.1| predicted protein [Physcomitrella... |
| Match: gi|218438948|ref|YP_002377277.1| |
score: 117 |
e-value: 2e-24 |
Identity: 32.58% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase, sigma 70 subunit, RpoD subfamily [Cyanothece sp. PCC 7424] >gi218171676|gb|ACK70409.1| RNA polymerase... |
| Match: gi|196177205|gb|EDX72213.1| |
score: 116 |
e-value: 7e-24 |
Identity: 32.58% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA |
| Match: gi|186686393|ref|YP_001869589.1| |
score: 116 |
e-value: 5e-24 |
Identity: 33.33% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase sigma factor RpoD [Nostoc punctiforme PCC 73102] >gi8118663|gb|AAF73062.1|AF265349_1 primary vegetativ... |
| Match: gi|75812337|ref|YP_319956.1| |
score: 116 |
e-value: 7e-24 |
Identity: 30.71% |
Span: 837bp (52.2%) |
Frame: 1 |
| Sigma-28 |
| Match: gi|196192415|gb|EDX87379.1| |
score: 115 |
e-value: 9e-24 |
Identity: 31.82% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA |
| Match: gi|17232755|ref|NP_489303.1| |
score: 115 |
e-value: 1e-23 |
Identity: 33.33% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase sigma factor RpoD [Nostoc sp. PCC 7120] >gi75907632|ref|YP_321928.1| RNA polymerase sigma factor RpoD ... |
| Match: gi|170078618|ref|YP_001735256.1| |
score: 115 |
e-value: 1e-23 |
Identity: 32.95% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase sigma factor [Synechococcus sp. PCC 7002] >gi558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] >... |
| Match: gi|1588486|prf||2208419B |
score: 115 |
e-value: 1e-23 |
Identity: 32.95% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase sigma factor |
| Match: gi|81299460|ref|YP_399668.1| |
score: 114 |
e-value: 2e-23 |
Identity: 32.2% |
Span: 789bp (49.2%) |
Frame: 1 |
| Sigma-70 |
| Match: gi|56750888|ref|YP_171589.1| |
score: 114 |
e-value: 2e-23 |
Identity: 32.2% |
Span: 789bp (49.2%) |
Frame: 1 |
| gi|56750888|ref|YP_171589.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus elongatus PCC 6301] >gi|56685... |
| Match: gi|217140|dbj|BAA01749.1| |
score: 114 |
e-value: 2e-23 |
Identity: 32.2% |
Span: 789bp (49.2%) |
Frame: 1 |
| gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus sp.] |
| Match: gi|172035560|ref|YP_001802061.1| |
score: 114 |
e-value: 2e-23 |
Identity: 31.78% |
Span: 768bp (47.9%) |
Frame: 1 |
| group |
| Match: gi|186680839|ref|YP_001864035.1| |
score: 114 |
e-value: 3e-23 |
Identity: 29.29% |
Span: 831bp (51.8%) |
Frame: 1 |
| RNA |
| Match: gi|196243917|ref|ZP_03142645.1| |
score: 114 |
e-value: 3e-23 |
Identity: 31.78% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|158335492|ref|YP_001516664.1| |
score: 114 |
e-value: 2e-23 |
Identity: 29.08% |
Span: 843bp (52.6%) |
Frame: 1 |
| RNA |
| Match: gi|168012500|ref|XP_001758940.1| |
score: 114 |
e-value: 2e-23 |
Identity: 31.84% |
Span: 789bp (49.2%) |
Frame: 1 |
| plastid sigma facor SIG2 [Physcomitrella patens subsp. patens] >gi12697780|dbj|BAB21618.1| PpSIG2 [Physcomitrella pat... |
| Match: gi|119512308|ref|ZP_01631394.1| |
score: 113 |
e-value: 6e-23 |
Identity: 33.33% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase sigma factor [Nodularia spumigena CCY9414] >gi119463021|gb|EAW43972.1| RNA polymerase sigma factor [No... |
| Match: gi|209523577|ref|ZP_03272131.1| |
score: 113 |
e-value: 6e-23 |
Identity: 32.58% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase, sigma 70 subunit, RpoD family [Arthrospira maxima CS-328] >gi209495982|gb|EDZ96283.1| RNA polymerase,... |
| Match: gi|218439771|ref|YP_002378100.1| |
score: 113 |
e-value: 6e-23 |
Identity: 31.4% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|17233195|ref|NP_490285.1| |
score: 113 |
e-value: 4e-23 |
Identity: 30.71% |
Span: 837bp (52.2%) |
Frame: 1 |
| gi|17233195|ref|NP_490285.1| group 2 sigma 70-type sigma factor [Nostoc sp. PCC 7120] gi|25288483|pir||AC2500 group 2... |
| Match: gi|196242349|ref|ZP_03141103.1| |
score: 112 |
e-value: 7e-23 |
Identity: 31.82% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA |
| Match: gi|166364164|ref|YP_001656437.1| |
score: 112 |
e-value: 1e-22 |
Identity: 32.17% |
Span: 768bp (47.9%) |
Frame: 1 |
| group |
| Match: gi|196254691|ref|ZP_03153230.1| |
score: 112 |
e-value: 1e-22 |
Identity: 31.4% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|196190148|gb|EDX85112.1| |
score: 112 |
e-value: 1e-22 |
Identity: 29.06% |
Span: 792bp (49.4%) |
Frame: 1 |
| RNA |
| Match: gi|159029420|emb|CAO90796.1| |
score: 112 |
e-value: 1e-22 |
Identity: 30.39% |
Span: 837bp (52.2%) |
Frame: 1 |
| unnamed |
| Match: gi|159027100|emb|CAO89285.1| |
score: 112 |
e-value: 7e-23 |
Identity: 32.17% |
Span: 768bp (47.9%) |
Frame: 1 |
| rpoD |
| Match: gi|126661338|ref|ZP_01732404.1| |
score: 112 |
e-value: 1e-22 |
Identity: 31.4% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|196189146|gb|EDX84110.1| |
score: 111 |
e-value: 2e-22 |
Identity: 29.08% |
Span: 837bp (52.2%) |
Frame: 1 |
| RNA |
| Match: gi|119489756|ref|ZP_01622514.1| |
score: 111 |
e-value: 2e-22 |
Identity: 32.58% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA |
| Match: gi|166368031|ref|YP_001660304.1| |
score: 111 |
e-value: 2e-22 |
Identity: 30.04% |
Span: 837bp (52.2%) |
Frame: 1 |
| group |
| Match: gi|37523331|ref|NP_926708.1| |
score: 111 |
e-value: 2e-22 |
Identity: 31.5% |
Span: 813bp (50.7%) |
Frame: 1 |
| gi|37523331|ref|NP_926708.1| group2 RNA polymerase sigma factor [Gloeobacter violaceus] gi|35214335|dbj|BAC91703.1| g... |
| Match: gi|19910024|dbj|BAB87263.1| |
score: 110 |
e-value: 5e-22 |
Identity: 30.04% |
Span: 798bp (49.8%) |
Frame: 1 |
| gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa] |
| Match: gi|169883528|gb|ACA97859.1| |
score: 110 |
e-value: 5e-22 |
Identity: 30.04% |
Span: 837bp (52.2%) |
Frame: 1 |
| RNA |
| Match: gi|1769413|dbj|BAA13122.1| |
score: 110 |
e-value: 4e-22 |
Identity: 30.39% |
Span: 837bp (52.2%) |
Frame: 1 |
| gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa] |
| Match: gi|113477482|ref|YP_723543.1| |
score: 110 |
e-value: 3e-22 |
Identity: 28.68% |
Span: 792bp (49.4%) |
Frame: 1 |
| RNA |
| Match: gi|67924587|ref|ZP_00518002.1| |
score: 110 |
e-value: 3e-22 |
Identity: 31.4% |
Span: 768bp (47.9%) |
Frame: 1 |
| Sigma-70 |
| Match: gi|162605994|ref|XP_001713512.1| |
score: 109 |
e-value: 8e-22 |
Identity: 32.38% |
Span: 723bp (45.1%) |
Frame: 1 |
| RNA-polymerase |
| Match: gi|170076992|ref|YP_001733630.1| |
score: 109 |
e-value: 6e-22 |
Identity: 28.27% |
Span: 837bp (52.2%) |
Frame: 1 |
| Group |
| Match: gi|145347899|ref|XP_001418397.1| |
score: 109 |
e-value: 6e-22 |
Identity: 31.49% |
Span: 837bp (52.2%) |
Frame: 1 |
| predicted |
| Match: gi|119511025|ref|ZP_01630145.1| |
score: 108 |
e-value: 1e-21 |
Identity: 28.21% |
Span: 813bp (50.7%) |
Frame: 1 |
| RNA |
| Match: gi|158334991|ref|YP_001516163.1| |
score: 108 |
e-value: 2e-21 |
Identity: 31.82% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA |
| Match: gi|160331013|ref|XP_001712214.1| |
score: 108 |
e-value: 1e-21 |
Identity: 29.7% |
Span: 894bp (55.8%) |
Frame: 1 |
| rpoD |
| Match: gi|186685842|ref|YP_001869038.1| |
score: 108 |
e-value: 2e-21 |
Identity: 28.21% |
Span: 837bp (52.2%) |
Frame: 1 |
| RNA |
| Match: gi|159026170|emb|CAO88820.1| |
score: 108 |
e-value: 2e-21 |
Identity: 27.92% |
Span: 792bp (49.4%) |
Frame: 1 |
| unnamed |
| Match: gi|113477826|ref|YP_723887.1| |
score: 108 |
e-value: 2e-21 |
Identity: 31.6% |
Span: 633bp (39.5%) |
Frame: 1 |
| RNA |
| Match: gi|218247332|ref|YP_002372703.1| |
score: 108 |
e-value: 2e-21 |
Identity: 30.62% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|209527735|ref|ZP_03276230.1| |
score: 108 |
e-value: 2e-21 |
Identity: 30.23% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|113478384|ref|YP_724445.1| |
score: 108 |
e-value: 1e-21 |
Identity: 31.82% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA |
| Match: gi|22298374|ref|NP_681621.1| |
score: 108 |
e-value: 2e-21 |
Identity: 31.01% |
Span: 768bp (47.9%) |
Frame: 1 |
| gi|22298374|ref|NP_681621.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22294553|dbj... |
| Match: gi|186681941|ref|YP_001865137.1| |
score: 107 |
e-value: 4e-21 |
Identity: 27.96% |
Span: 909bp (56.7%) |
Frame: 1 |
| RNA |
| Match: gi|22297808|ref|NP_681055.1| |
score: 107 |
e-value: 4e-21 |
Identity: 28.3% |
Span: 792bp (49.4%) |
Frame: 1 |
| gi|22297808|ref|NP_681055.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22293985|dbj|... |
| Match: gi|75908113|ref|YP_322409.1| |
score: 107 |
e-value: 4e-21 |
Identity: 28.57% |
Span: 813bp (50.7%) |
Frame: 1 |
| RNA |
| Match: gi|116058189|emb|CAL53378.1| |
score: 107 |
e-value: 3e-21 |
Identity: 30.41% |
Span: 915bp (57.1%) |
Frame: 1 |
| SigA |
| Match: gi|196238683|ref|ZP_03137458.1| |
score: 107 |
e-value: 2e-21 |
Identity: 27.62% |
Span: 849bp (53.0%) |
Frame: 1 |
| RNA |
| Match: gi|4105839|gb|AAD02575.1| |
score: 107 |
e-value: 3e-21 |
Identity: 31.85% |
Span: 723bp (45.1%) |
Frame: 1 |
| gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor; RpoD2 [Cyanidium caldarium] |
| Match: gi|186683480|ref|YP_001866676.1| |
score: 107 |
e-value: 2e-21 |
Identity: 27.55% |
Span: 879bp (54.8%) |
Frame: 1 |
| RNA |
| Match: gi|196244562|ref|ZP_03143288.1| |
score: 107 |
e-value: 2e-21 |
Identity: 30.62% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|166367266|ref|YP_001659539.1| |
score: 107 |
e-value: 3e-21 |
Identity: 27.92% |
Span: 792bp (49.4%) |
Frame: 1 |
| group |
| Match: gi|75907421|ref|YP_321717.1| |
score: 107 |
e-value: 3e-21 |
Identity: 27.86% |
Span: 831bp (51.8%) |
Frame: 1 |
| Sigma |
| Match: gi|6273430|emb|CAB60192.1| |
score: 107 |
e-value: 2e-21 |
Identity: 29.43% |
Span: 789bp (49.2%) |
Frame: 1 |
| putative sigma-like transcription factor [Arabidopsis thaliana] |
| Match: gi|17231741|ref|NP_488289.1| |
score: 107 |
e-value: 3e-21 |
Identity: 27.5% |
Span: 831bp (51.8%) |
Frame: 1 |
| gi|17231741|ref|NP_488289.1| group 2 sigma 70-type sigma factor F [Nostoc sp. PCC 7120] gi|25288487|pir||AB2337 group... |
| Match: gi|158336372|ref|YP_001517546.1| |
score: 107 |
e-value: 2e-21 |
Identity: 28.3% |
Span: 792bp (49.4%) |
Frame: 1 |
| RNA |
| Match: gi|67925121|ref|ZP_00518496.1| |
score: 107 |
e-value: 2e-21 |
Identity: 28.98% |
Span: 837bp (52.2%) |
Frame: 1 |
| Sigma-70 |
| Match: gi|158337702|ref|YP_001518878.1| |
score: 107 |
e-value: 4e-21 |
Identity: 28.68% |
Span: 792bp (49.4%) |
Frame: 1 |
| RNA |
| Match: gi|18404292|ref|NP_565856.1| |
score: 107 |
e-value: 2e-21 |
Identity: 29.43% |
Span: 789bp (49.2%) |
Frame: 1 |
| SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|119493081|ref|ZP_01624006.1| |
score: 106 |
e-value: 7e-21 |
Identity: 27.17% |
Span: 819bp (51.1%) |
Frame: 1 |
| Sigma |
| Match: gi|170077819|ref|YP_001734457.1| |
score: 106 |
e-value: 7e-21 |
Identity: 31.01% |
Span: 768bp (47.9%) |
Frame: 1 |
| sigma-70 |
| Match: gi|157347545|emb|CAO18182.1| |
score: 106 |
e-value: 7e-21 |
Identity: 31.15% |
Span: 726bp (45.3%) |
Frame: 1 |
| unnamed |
| Match: gi|119509984|ref|ZP_01629125.1| |
score: 106 |
e-value: 5e-21 |
Identity: 28.21% |
Span: 831bp (51.8%) |
Frame: 1 |
| group |
| Match: gi|19910022|dbj|BAB87262.1| |
score: 105 |
e-value: 9e-21 |
Identity: 31.56% |
Span: 723bp (45.1%) |
Frame: 1 |
| gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta] |
| Match: gi|218441429|ref|YP_002379758.1| |
score: 105 |
e-value: 2e-20 |
Identity: 28.68% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|196241468|ref|ZP_03140231.1| |
score: 105 |
e-value: 1e-20 |
Identity: 28.78% |
Span: 828bp (51.7%) |
Frame: 1 |
| RNA |
| Match: gi|196179584|gb|EDX74578.1| |
score: 105 |
e-value: 9e-21 |
Identity: 30.32% |
Span: 660bp (41.2%) |
Frame: 1 |
| RNA |
| Match: gi|86606677|ref|YP_475440.1| |
score: 105 |
e-value: 1e-20 |
Identity: 28.21% |
Span: 894bp (55.8%) |
Frame: 1 |
| RNA |
| Match: gi|119489578|ref|ZP_01622338.1| |
score: 105 |
e-value: 2e-20 |
Identity: 27.92% |
Span: 792bp (49.4%) |
Frame: 1 |
| RNA |
| Match: gi|186684216|ref|YP_001867412.1| |
score: 104 |
e-value: 2e-20 |
Identity: 28.3% |
Span: 792bp (49.4%) |
Frame: 1 |
| RpoD |
| Match: gi|196183608|gb|EDX78591.1| |
score: 104 |
e-value: 2e-20 |
Identity: 27.46% |
Span: 843bp (52.6%) |
Frame: 1 |
| RNA |
| Match: gi|86607034|ref|YP_475797.1| |
score: 104 |
e-value: 2e-20 |
Identity: 33.93% |
Span: 669bp (41.7%) |
Frame: 1 |
| RNA |
| Match: gi|218440063|ref|YP_002378392.1| |
score: 104 |
e-value: 3e-20 |
Identity: 28.57% |
Span: 849bp (53.0%) |
Frame: 1 |
| RNA |
| Match: gi|172038507|ref|YP_001805008.1| |
score: 104 |
e-value: 2e-20 |
Identity: 29.03% |
Span: 648bp (40.4%) |
Frame: 1 |
| group |
| Match: gi|33863339|ref|NP_894899.1| |
score: 104 |
e-value: 2e-20 |
Identity: 28.09% |
Span: 765bp (47.7%) |
Frame: 1 |
| gi|33863339|ref|NP_894899.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|119492598|ref|ZP_01623816.1| |
score: 104 |
e-value: 2e-20 |
Identity: 31.01% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA |
| Match: gi|33862400|ref|NP_893960.1| |
score: 104 |
e-value: 2e-20 |
Identity: 28.09% |
Span: 765bp (47.7%) |
Frame: 1 |
| gi|33862400|ref|NP_893960.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|17158751|ref|NP_478262.1| |
score: 104 |
e-value: 3e-20 |
Identity: 27.18% |
Span: 891bp (55.6%) |
Frame: 1 |
| gi|17158751|ref|NP_478262.1| transcription initiation factor sigma [Nostoc sp. PCC 7120] gi|464687|sp|Q03065|RPSB_ANA... |
|
| 150 lower scoring hits censored -- only 100 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 5 hits recorded |
| Match: At5G24120.1 |
score: 466 |
e-value: 1e-131 |
Identity: 58.86% |
Span: 1446bp (90.2%) |
Frame: 1 |
| Symbols: SIG5, SIGE | SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor... |
| Match: At2G36990.1 |
score: 107 |
e-value: 2e-23 |
Identity: 29.43% |
Span: 789bp (49.2%) |
Frame: 1 |
| Symbols: SIG6, SIGF | SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcriptio... |
| Match: At1G08540.1 |
score: 97.4 |
e-value: 2e-20 |
Identity: 31.02% |
Span: 717bp (44.7%) |
Frame: 1 |
| Symbols: SIGA, SIG2, SIGB | SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor |... |
| Match: At1G64860.1 |
score: 83.6 |
e-value: 3e-16 |
Identity: 31.09% |
Span: 567bp (35.4%) |
Frame: 1 |
| Symbols: SIG1, SIG2, SIGB, RPOD1, SIGA | SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ transcrip... |
| Match: At5G13730.1 |
score: 65.5 |
e-value: 9e-11 |
Identity: 26.96% |
Span: 588bp (36.7%) |
Frame: 1 |
| Symbols: SIGD, SIG4 | SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor | chr5:... |
|
| swissprot [blastx] | Showing best 77 hits recorded |
| Match: P26683 |
score: 115 |
e-value: 7e-25 |
Identity: 33.33% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1 |
| Match: P38023 |
score: 114 |
e-value: 1e-24 |
Identity: 32.2% |
Span: 789bp (49.2%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1 |
| Match: Q03065 |
score: 104 |
e-value: 2e-21 |
Identity: 27.18% |
Span: 891bp (55.6%) |
Frame: 1 |
| RNA polymerase sigma-B factor OS=Anabaena sp. (strain PCC 7120) GN=sigB PE=3 SV=1 |
| Match: P74565 |
score: 98.2 |
e-value: 1e-19 |
Identity: 32.22% |
Span: 714bp (44.5%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1 |
| Match: P52322 |
score: 95.5 |
e-value: 8e-19 |
Identity: 33.33% |
Span: 645bp (40.2%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1 |
| Match: P33452 |
score: 93.2 |
e-value: 4e-18 |
Identity: 28.94% |
Span: 924bp (57.6%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpoD PE=3 SV=2 |
| Match: P18333 |
score: 90.5 |
e-value: 2e-17 |
Identity: 31.74% |
Span: 495bp (30.9%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Chlamydia trachomatis GN=rpoD PE=3 SV=2 |
| Match: P17531 |
score: 90.5 |
e-value: 2e-17 |
Identity: 25.29% |
Span: 942bp (58.8%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Myxococcus xanthus GN=rpoD PE=3 SV=1 |
| Match: Q59753 |
score: 90.5 |
e-value: 2e-17 |
Identity: 29.26% |
Span: 924bp (57.6%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Rhizobium meliloti GN=rpoD PE=3 SV=1 |
| Match: P56835 |
score: 90.5 |
e-value: 2e-17 |
Identity: 31.74% |
Span: 495bp (30.9%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Chlamydia muridarum GN=rpoD PE=3 SV=1 |
| Match: P77994 |
score: 90.1 |
e-value: 3e-17 |
Identity: 30.43% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Thermotoga maritima GN=rpoD PE=1 SV=3 |
| Match: P46400 |
score: 90.1 |
e-value: 3e-17 |
Identity: 27.64% |
Span: 768bp (47.9%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Rhodobacter capsulatus GN=rpoD PE=2 SV=1 |
| Match: O66381 |
score: 90.1 |
e-value: 3e-17 |
Identity: 31.88% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Bacillus halodurans GN=sigA PE=3 SV=2 |
| Match: Q9Z7F0 |
score: 89.4 |
e-value: 5e-17 |
Identity: 31.14% |
Span: 495bp (30.9%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Chlamydia pneumoniae GN=rpoD PE=3 SV=1 |
| Match: P77951 |
score: 89.4 |
e-value: 5e-17 |
Identity: 32.39% |
Span: 501bp (31.3%) |
Frame: 1 |
| RNA polymerase principal sigma factor hrdB OS=Streptomyces griseus GN=hrdB PE=1 SV=1 |
| Match: P18183 |
score: 89 |
e-value: 7e-17 |
Identity: 33.77% |
Span: 447bp (27.9%) |
Frame: 1 |
| RNA polymerase principal sigma factor hrdB OS=Streptomyces coelicolor GN=hrdB PE=3 SV=2 |
| Match: Q92BQ6 |
score: 88.6 |
e-value: 9e-17 |
Identity: 28.43% |
Span: 897bp (56.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Listeria innocua GN=rpoD PE=3 SV=1 |
| Match: P52331 |
score: 88.6 |
e-value: 9e-17 |
Identity: 28.43% |
Span: 897bp (56.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Listeria monocytogenes GN=rpoD PE=3 SV=1 |
| Match: P33656 |
score: 88.6 |
e-value: 9e-17 |
Identity: 29.49% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Clostridium acetobutylicum GN=rpoD PE=3 SV=1 |
| Match: Q03066 |
score: 88.2 |
e-value: 1e-16 |
Identity: 27.68% |
Span: 744bp (46.4%) |
Frame: 1 |
| RNA polymerase sigma-C factor OS=Anabaena sp. (strain PCC 7120) GN=sigC PE=3 SV=2 |
| Match: P52328 |
score: 87.8 |
e-value: 2e-16 |
Identity: 33.19% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Bacillus sp. GN=sigA PE=3 SV=1 |
| Match: P26480 |
score: 87.4 |
e-value: 2e-16 |
Identity: 24% |
Span: 777bp (48.5%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Pseudomonas aeruginosa GN=rpoD PE=3 SV=1 |
| Match: P0A4I9 |
score: 86.7 |
e-value: 4e-16 |
Identity: 32.5% |
Span: 474bp (29.6%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae GN=rpoD PE=3 SV=1 |
| Match: P0A4J0 |
score: 86.7 |
e-value: 4e-16 |
Identity: 32.5% |
Span: 474bp (29.6%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rpoD PE=3 SV=1 |
| Match: Q60012 |
score: 86.3 |
e-value: 5e-16 |
Identity: 30.13% |
Span: 681bp (42.5%) |
Frame: 1 |
| RNA polymerase principal sigma factor hrdD OS=Streptomyces viridifaciens GN=hrdD |
| Match: P43766 |
score: 86.3 |
e-value: 5e-16 |
Identity: 27.2% |
Span: 777bp (48.5%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Haemophilus influenzae GN=rpoD PE=3 SV=1 |
| Match: Q5HNY7 |
score: 85.9 |
e-value: 6e-16 |
Identity: 31.44% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=rpoD PE=3 SV=1 |
| Match: Q8CP24 |
score: 85.9 |
e-value: 6e-16 |
Identity: 31.44% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus epidermidis (strain ATCC 12228) GN=rpoD PE=3 SV=1 |
| Match: P52329 |
score: 85.9 |
e-value: 6e-16 |
Identity: 31.88% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Enterococcus faecalis GN=rpoD PE=3 SV=2 |
| Match: P52324 |
score: 85.9 |
e-value: 6e-16 |
Identity: 28.51% |
Span: 639bp (39.9%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Caulobacter crescentus GN=rpoD PE=3 SV=1 |
| Match: Q99TT5 |
score: 85.5 |
e-value: 8e-16 |
Identity: 31.88% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain N315) GN=rpoD PE=1 SV=1 |
| Match: P0A0I8 |
score: 85.1 |
e-value: 1e-15 |
Identity: 31.44% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rpoD PE=1 SV=1 |
| Match: Q6GGD8 |
score: 85.1 |
e-value: 1e-15 |
Identity: 31.44% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MRSA252) GN=rpoD PE=3 SV=1 |
| Match: P0A0J0 |
score: 85.1 |
e-value: 1e-15 |
Identity: 31.44% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain NCTC 8325) GN=rpoD PE=3 SV=1 |
| Match: Q6G905 |
score: 85.1 |
e-value: 1e-15 |
Identity: 31.44% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MSSA476) GN=rpoD PE=3 SV=1 |
| Match: Q5HFJ9 |
score: 85.1 |
e-value: 1e-15 |
Identity: 31.44% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain COL) GN=rpoD PE=3 SV=1 |
| Match: P0A0I9 |
score: 85.1 |
e-value: 1e-15 |
Identity: 31.44% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Staphylococcus aureus (strain MW2) GN=rpoD PE=3 SV=1 |
| Match: P33118 |
score: 84 |
e-value: 2e-15 |
Identity: 31.48% |
Span: 642bp (40.0%) |
Frame: 1 |
| RNA polymerase sigma factor sigB OS=Corynebacterium diphtheriae GN=sigB PE=3 SV=2 |
| Match: Q89B10 |
score: 84 |
e-value: 2e-15 |
Identity: 25.66% |
Span: 879bp (54.8%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=rpoD PE=3 SV=1 |
| Match: O33662 |
score: 84 |
e-value: 2e-15 |
Identity: 31.88% |
Span: 474bp (29.6%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Streptococcus mutans GN=rpoD PE=3 SV=1 |
| Match: Q83BB6 |
score: 83.6 |
e-value: 3e-15 |
Identity: 28.21% |
Span: 675bp (42.1%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Coxiella burnetii GN=rpoD |
| Match: P0A603 |
score: 83.6 |
e-value: 3e-15 |
Identity: 30.12% |
Span: 735bp (45.9%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Mycobacterium bovis GN=rpoD PE=3 SV=1 |
| Match: P0A602 |
score: 83.6 |
e-value: 3e-15 |
Identity: 30.12% |
Span: 735bp (45.9%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Mycobacterium tuberculosis GN=rpoD PE=3 SV=1 |
| Match: P06224 |
score: 83.6 |
e-value: 3e-15 |
Identity: 26.42% |
Span: 891bp (55.6%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Bacillus subtilis GN=sigA PE=1 SV=2 |
| Match: O83506 |
score: 83.6 |
e-value: 3e-15 |
Identity: 30.92% |
Span: 615bp (38.4%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Treponema pallidum GN=rpoD PE=3 SV=1 |
| Match: O24744 |
score: 82.8 |
e-value: 5e-15 |
Identity: 27.23% |
Span: 615bp (38.4%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Shewanella violacea GN=rpoD PE=3 SV=1 |
| Match: Q8PG33 |
score: 82.8 |
e-value: 5e-15 |
Identity: 28.26% |
Span: 684bp (42.7%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Xanthomonas axonopodis pv. citri GN=rpoD |
| Match: P52327 |
score: 82.4 |
e-value: 7e-15 |
Identity: 27.71% |
Span: 660bp (41.2%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Pseudomonas putida GN=rpoD |
| Match: Q8P4H2 |
score: 82.4 |
e-value: 7e-15 |
Identity: 28.5% |
Span: 615bp (38.4%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Xanthomonas campestris pv. campestris GN=rpoD |
| Match: Q87DT7 |
score: 82.4 |
e-value: 7e-15 |
Identity: 27.27% |
Span: 675bp (42.1%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=rpoD |
| Match: P27785 |
score: 82.4 |
e-value: 7e-15 |
Identity: 30.26% |
Span: 678bp (42.3%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Streptomyces aureofaciens GN=rpoD PE=3 SV=1 |
| Match: P18249 |
score: 82 |
e-value: 9e-15 |
Identity: 30.53% |
Span: 666bp (41.5%) |
Frame: 1 |
| RNA polymerase principal sigma factor hrdD OS=Streptomyces coelicolor GN=hrdD |
| Match: P32001 |
score: 82 |
e-value: 9e-15 |
Identity: 24.17% |
Span: 945bp (59.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpoD PE=3 SV=1 |
| Match: Q59996 |
score: 82 |
e-value: 9e-15 |
Identity: 27.68% |
Span: 669bp (41.7%) |
Frame: 1 |
| Probable RNA polymerase sigma-C factor OS=Synechocystis sp. (strain PCC 6803) GN=sigC PE=3 SV=1 |
| Match: P52326 |
score: 81.6 |
e-value: 1e-14 |
Identity: 24.56% |
Span: 651bp (40.6%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Pseudomonas fluorescens GN=rpoD PE=3 SV=1 |
| Match: Q9PDM9 |
score: 81.6 |
e-value: 1e-14 |
Identity: 27.43% |
Span: 660bp (41.2%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Xylella fastidiosa GN=rpoD |
| Match: P18182 |
score: 80.9 |
e-value: 2e-14 |
Identity: 31.65% |
Span: 648bp (40.4%) |
Frame: 1 |
| RNA polymerase principal sigma factor hrdA OS=Streptomyces coelicolor GN=hrdA PE=3 SV=2 |
| Match: P0A2E4 |
score: 80.9 |
e-value: 2e-14 |
Identity: 27.38% |
Span: 723bp (45.1%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Salmonella typhi GN=rpoD PE=3 SV=1 |
| Match: P33451 |
score: 80.9 |
e-value: 2e-14 |
Identity: 32.04% |
Span: 609bp (38.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Rickettsia prowazekii GN=rpoD |
| Match: P0A2E3 |
score: 80.9 |
e-value: 2e-14 |
Identity: 27.38% |
Span: 723bp (45.1%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Salmonella typhimurium GN=rpoD PE=3 SV=1 |
| Match: Q68VQ5 |
score: 80.9 |
e-value: 2e-14 |
Identity: 32.04% |
Span: 609bp (38.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Rickettsia typhi GN=rpoD |
| Match: Q4UJT1 |
score: 80.9 |
e-value: 2e-14 |
Identity: 32.04% |
Span: 609bp (38.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Rickettsia felis GN=rpoD |
| Match: Q92FZ8 |
score: 80.9 |
e-value: 2e-14 |
Identity: 32.04% |
Span: 609bp (38.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Rickettsia conorii GN=rpoD |
| Match: P52325 |
score: 80.5 |
e-value: 3e-14 |
Identity: 26.77% |
Span: 900bp (56.1%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Neisseria gonorrhoeae GN=rpoD |
| Match: Q1RKH7 |
score: 80.5 |
e-value: 3e-14 |
Identity: 32.04% |
Span: 609bp (38.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Rickettsia bellii (strain RML369-C) GN=rpoD |
| Match: P00579 |
score: 79.3 |
e-value: 6e-14 |
Identity: 26.98% |
Span: 723bp (45.1%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Escherichia coli (strain K12) GN=rpoD PE=1 SV=2 |
| Match: P57163 |
score: 79.3 |
e-value: 6e-14 |
Identity: 26.11% |
Span: 642bp (40.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpoD PE=3 SV=1 |
| Match: P52323 |
score: 79 |
e-value: 7e-14 |
Identity: 27.52% |
Span: 648bp (40.4%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Borrelia burgdorferi GN=rpoD PE=3 SV=2 |
| Match: P58290 |
score: 79 |
e-value: 7e-14 |
Identity: 32.62% |
Span: 420bp (26.2%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD (Fragment) OS=Lactococcus lactis subsp. cremoris GN=rpoD |
| Match: Q04506 |
score: 78.6 |
e-value: 1e-13 |
Identity: 32.62% |
Span: 420bp (26.2%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Lactococcus lactis subsp. lactis GN=rpoD |
| Match: Q9ZMY3 |
score: 77.8 |
e-value: 2e-13 |
Identity: 31.65% |
Span: 636bp (39.7%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Helicobacter pylori J99 GN=rpoD PE=3 SV=1 |
| Match: P59117 |
score: 77.4 |
e-value: 2e-13 |
Identity: 29.13% |
Span: 609bp (38.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Leptospira interrogans GN=rpoD PE=3 SV=1 |
| Match: P61540 |
score: 77.4 |
e-value: 2e-13 |
Identity: 29.13% |
Span: 609bp (38.0%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rpoD ... |
| Match: P55993 |
score: 77 |
e-value: 3e-13 |
Identity: 31.65% |
Span: 636bp (39.7%) |
Frame: 1 |
| RNA polymerase sigma factor rpoD OS=Helicobacter pylori GN=rpoD PE=3 SV=1 |
| Match: Q59914 |
score: 76.6 |
e-value: 4e-13 |
Identity: 29.13% |
Span: 681bp (42.5%) |
Frame: 1 |
| RNA polymerase principal sigma factor hrdD OS=Streptomyces griseus GN=hrdD |
| Match: O51804 |
score: 74.3 |
e-value: 2e-12 |
Identity: 29.3% |
Span: 636bp (39.7%) |
Frame: 1 |
| RNA polymerase sigma factor rpoS OS=Vibrio cholerae GN=rpoS |
| Match: P18184 |
score: 73.2 |
e-value: 4e-12 |
Identity: 26.51% |
Span: 639bp (39.9%) |
Frame: 1 |
| RNA polymerase principal sigma factor hrdC OS=Streptomyces coelicolor GN=hrdC PE=3 SV=1 |
|
