| arabidopsis/peptide [blastx] | Showing best 10 hits recorded |
| Match: At5G24120.1 |
score: 430 |
e-value: 2e-129 |
Identity: 56.04% |
Span: 1338bp (83.9%) |
Frame: 2 |
| Symbols: SIG5, SIGE | SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor... |
| Match: At2G36990.1 |
score: 97.1 |
e-value: 3e-22 |
Identity: 28.9% |
Span: 651bp (40.8%) |
Frame: 2 |
| Symbols: SIG6, SIGF | SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcriptio... |
| Match: At1G08540.1 |
score: 94.7 |
e-value: 6e-22 |
Identity: 31.25% |
Span: 513bp (32.2%) |
Frame: 2 |
| Symbols: SIGA, SIG2, SIGB | SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor |... |
| Match: At1G64860.1 |
score: 83.6 |
e-value: 3e-16 |
Identity: 31.09% |
Span: 567bp (35.5%) |
Frame: 2 |
| Symbols: SIG1, SIG2, SIGB, RPOD1, SIGA | SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ transcrip... |
| Match: At5G13730.1 |
score: 65.5 |
e-value: 9e-11 |
Identity: 26.96% |
Span: 588bp (36.9%) |
Frame: 2 |
| Symbols: SIGD, SIG4 | SIG4 (SIGMA FACTOR 4); DNA binding / DNA-directed RNA polymerase/ transcription factor | chr5:... |
| Match: At3G53920.1 |
score: 57.4 |
e-value: 7e-10 |
Identity: 25.57% |
Span: 522bp (32.7%) |
Frame: 2 |
| Symbols: SIG3, SIGC | SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcriptio... |
| Match: At5G24120.1 |
score: 52.4 |
e-value: 2e-129 |
Identity: 100% |
Span: 75bp (4.7%) |
Frame: 3 |
| Symbols: SIG5, SIGE | SIGE (RNA polymerase sigma subunit E); DNA binding / DNA-directed RNA polymerase/ sigma factor... |
| Match: At1G08540.1 |
score: 28.5 |
e-value: 6e-22 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| Symbols: SIGA, SIG2, SIGB | SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor |... |
| Match: At2G36990.1 |
score: 26.9 |
e-value: 3e-22 |
Identity: 45.45% |
Span: 66bp (4.1%) |
Frame: 3 |
| Symbols: SIG6, SIGF | SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcriptio... |
| Match: At3G53920.1 |
score: 25 |
e-value: 7e-10 |
Identity: 45.45% |
Span: 66bp (4.1%) |
Frame: 3 |
| Symbols: SIG3, SIGC | SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcriptio... |
|
| genbank/nr [blastx] | Showing best 100 hits recorded |
| Match: gi|15237896|ref|NP_197800.1| |
score: 430 |
e-value: 1e-127 |
Identity: 56.04% |
Span: 1338bp (83.9%) |
Frame: 2 |
| SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor [Arabidopsis tha... |
| Match: gi|30698488|dbj|BAC76601.1| |
score: 327 |
e-value: 3e-95 |
Identity: 44.05% |
Span: 1248bp (78.2%) |
Frame: 2 |
| gi|30698488|dbj|BAC76601.1| Sig5 [Oryza sativa (japonica cultivar-group)] gi|30698518|dbj|BAC76607.1| plastid sigma f... |
| Match: gi|15010718|gb|AAK74018.1| |
score: 186 |
e-value: 2e-45 |
Identity: 47.4% |
Span: 840bp (52.7%) |
Frame: 2 |
| AT5g24120/MLE8_4 [Arabidopsis thaliana] |
| Match: gi|56603661|dbj|BAD80742.1| |
score: 177 |
e-value: 2e-50 |
Identity: 39.53% |
Span: 753bp (47.2%) |
Frame: 2 |
| gi|56603661|dbj|BAD80742.1| plastid sigma factor PpSIG5 [Physcomitrella patens] |
| Match: gi|62320238|dbj|BAD94495.1| |
score: 168 |
e-value: 8e-40 |
Identity: 46.21% |
Span: 804bp (50.4%) |
Frame: 2 |
| sigma-like factor [Arabidopsis thaliana] |
| Match: gi|23126139|ref|ZP_00108045.1| |
score: 117 |
e-value: 1e-24 |
Identity: 31.67% |
Span: 717bp (45.0%) |
Frame: 2 |
| gi|23126139|ref|ZP_00108045.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|16331222|ref|NP_441950.1| |
score: 116 |
e-value: 3e-24 |
Identity: 32.58% |
Span: 660bp (41.4%) |
Frame: 2 |
| gi|16331222|ref|NP_441950.1| RNA polymerase sigma factor [Synechocystis sp. PCC 6803] gi|7434780|pir||S76042 transcri... |
| Match: gi|75705093|gb|ABA24767.1| |
score: 112 |
e-value: 6e-24 |
Identity: 30.2% |
Span: 732bp (45.9%) |
Frame: 2 |
| Sigma-28 |
| Match: gi|17135717|dbj|BAB78263.1| |
score: 110 |
e-value: 4e-23 |
Identity: 30.2% |
Span: 732bp (45.9%) |
Frame: 2 |
| group |
| Match: gi|23128624|ref|ZP_00110467.1| |
score: 110 |
e-value: 1e-22 |
Identity: 32.38% |
Span: 729bp (45.7%) |
Frame: 2 |
| gi|23128624|ref|ZP_00110467.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|23130601|ref|ZP_00112414.1| |
score: 109 |
e-value: 2e-22 |
Identity: 28.28% |
Span: 726bp (45.5%) |
Frame: 2 |
| gi|23130601|ref|ZP_00112414.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|67924587|ref|ZP_00518002.1| |
score: 108 |
e-value: 9e-22 |
Identity: 30.87% |
Span: 687bp (43.1%) |
Frame: 2 |
| Sigma-70 |
| Match: gi|35214335|dbj|BAC91703.1| |
score: 108 |
e-value: 6e-22 |
Identity: 33.02% |
Span: 642bp (40.3%) |
Frame: 2 |
| group2 |
| Match: gi|110168874|gb|ABG53414.1| |
score: 108 |
e-value: 9e-22 |
Identity: 31.6% |
Span: 633bp (39.7%) |
Frame: 2 |
| RNA |
| Match: gi|1588486|prf||2208419B |
score: 107 |
e-value: 5e-24 |
Identity: 31% |
Span: 684bp (42.9%) |
Frame: 2 |
| RNA polymerase sigma factor |
| Match: gi|558881|gb|AAB41506.1| |
score: 107 |
e-value: 5e-24 |
Identity: 31% |
Span: 684bp (42.9%) |
Frame: 2 |
| gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] |
| Match: gi|23127707|ref|ZP_00109570.1| |
score: 106 |
e-value: 4e-21 |
Identity: 30.7% |
Span: 642bp (40.3%) |
Frame: 2 |
| gi|23127707|ref|ZP_00109570.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|75908113|ref|YP_322409.1| |
score: 105 |
e-value: 5e-21 |
Identity: 30.7% |
Span: 642bp (40.3%) |
Frame: 2 |
| RNA |
| Match: gi|8118663|gb|AAF73062.1| |
score: 105 |
e-value: 1e-24 |
Identity: 30.57% |
Span: 684bp (42.9%) |
Frame: 2 |
| primary |
| Match: gi|110168530|gb|ABG53070.1| |
score: 105 |
e-value: 8e-21 |
Identity: 31.55% |
Span: 615bp (38.6%) |
Frame: 2 |
| RNA |
| Match: gi|14669832|dbj|BAB62008.1| |
score: 105 |
e-value: 8e-21 |
Identity: 31.94% |
Span: 570bp (35.7%) |
Frame: 2 |
| PpSIG2 |
| Match: gi|23126581|ref|ZP_00108472.1| |
score: 105 |
e-value: 8e-21 |
Identity: 29.3% |
Span: 765bp (48.0%) |
Frame: 2 |
| gi|23126581|ref|ZP_00108472.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|67925121|ref|ZP_00518496.1| |
score: 105 |
e-value: 6e-21 |
Identity: 29.91% |
Span: 636bp (39.9%) |
Frame: 2 |
| Sigma-70 |
| Match: gi|75907632|ref|YP_321928.1| |
score: 104 |
e-value: 3e-24 |
Identity: 30.57% |
Span: 684bp (42.9%) |
Frame: 2 |
| gi|75907632|ref|YP_321928.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413] >gi|75701357|gb|ABA2103... |
| Match: gi|22297808|ref|NP_681055.1| |
score: 104 |
e-value: 1e-20 |
Identity: 28.7% |
Span: 687bp (43.1%) |
Frame: 2 |
| gi|22297808|ref|NP_681055.1| group2 RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22293985|dbj|... |
| Match: gi|19910024|dbj|BAB87263.1| |
score: 104 |
e-value: 1e-20 |
Identity: 35.45% |
Span: 561bp (35.2%) |
Frame: 2 |
| gi|19910024|dbj|BAB87263.1| RNA polymerase sigma factor [Cyanophora paradoxa] |
| Match: gi|1769413|dbj|BAA13122.1| |
score: 104 |
e-value: 1e-20 |
Identity: 31.31% |
Span: 636bp (39.9%) |
Frame: 2 |
| gi|1769413|dbj|BAA13122.1| RpoD2 sigma factor [Microcystis aeruginosa] |
| Match: gi|1769590|gb|AAB95227.1| |
score: 104 |
e-value: 1e-20 |
Identity: 28.16% |
Span: 726bp (45.5%) |
Frame: 2 |
| gi|1769590|gb|AAB95227.1| sigma factor [Synechococcus sp.] |
| Match: gi|56750888|ref|YP_171589.1| |
score: 103 |
e-value: 5e-23 |
Identity: 30.13% |
Span: 684bp (42.9%) |
Frame: 2 |
| gi|56750888|ref|YP_171589.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus elongatus PCC 6301] >gi|56685... |
| Match: gi|110165664|gb|ABG50204.1| |
score: 103 |
e-value: 2e-20 |
Identity: 29.27% |
Span: 720bp (45.1%) |
Frame: 2 |
| RNA |
| Match: gi|217140|dbj|BAA01749.1| |
score: 103 |
e-value: 5e-23 |
Identity: 30.13% |
Span: 684bp (42.9%) |
Frame: 2 |
| gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus sp.] |
| Match: gi|81299460|ref|YP_399668.1| |
score: 103 |
e-value: 5e-23 |
Identity: 30.13% |
Span: 684bp (42.9%) |
Frame: 2 |
| Sigma-70 |
| Match: gi|23128585|ref|ZP_00110428.1| |
score: 103 |
e-value: 3e-20 |
Identity: 31% |
Span: 684bp (42.9%) |
Frame: 2 |
| gi|23128585|ref|ZP_00110428.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|22298374|ref|NP_681621.1| |
score: 103 |
e-value: 2e-20 |
Identity: 30.63% |
Span: 663bp (41.6%) |
Frame: 2 |
| gi|22298374|ref|NP_681621.1| group 2 RNA polymerase sigma factor [Thermosynechococcus elongatus BP-1] gi|22294553|dbj... |
| Match: gi|4105839|gb|AAD02575.1| |
score: 103 |
e-value: 6e-21 |
Identity: 36.21% |
Span: 519bp (32.5%) |
Frame: 2 |
| gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor; RpoD2 [Cyanidium caldarium] |
| Match: gi|8489797|gb|AAF75755.1| |
score: 102 |
e-value: 4e-20 |
Identity: 29.77% |
Span: 642bp (40.3%) |
Frame: 2 |
| group |
| Match: gi|67922139|ref|ZP_00515654.1| |
score: 102 |
e-value: 7e-20 |
Identity: 28.57% |
Span: 648bp (40.6%) |
Frame: 2 |
| Sigma-70 |
| Match: gi|75907421|ref|YP_321717.1| |
score: 102 |
e-value: 2e-20 |
Identity: 26.64% |
Span: 726bp (45.5%) |
Frame: 2 |
| Sigma |
| Match: gi|8489803|gb|AAF75759.1| |
score: 102 |
e-value: 2e-20 |
Identity: 26.23% |
Span: 726bp (45.5%) |
Frame: 2 |
| group |
| Match: gi|23129934|ref|ZP_00111755.1| |
score: 101 |
e-value: 1e-19 |
Identity: 30.58% |
Span: 615bp (38.6%) |
Frame: 2 |
| gi|23129934|ref|ZP_00111755.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|1405331|dbj|BAA11832.1| |
score: 101 |
e-value: 3e-20 |
Identity: 29.92% |
Span: 720bp (45.1%) |
Frame: 2 |
| gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium] |
| Match: gi|8489801|gb|AAF75758.1| |
score: 101 |
e-value: 1e-19 |
Identity: 29.49% |
Span: 648bp (40.6%) |
Frame: 2 |
| group |
| Match: gi|33862400|ref|NP_893960.1| |
score: 101 |
e-value: 8e-21 |
Identity: 29% |
Span: 597bp (37.4%) |
Frame: 2 |
| gi|33862400|ref|NP_893960.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|33863339|ref|NP_894899.1| |
score: 101 |
e-value: 8e-21 |
Identity: 29% |
Span: 597bp (37.4%) |
Frame: 2 |
| gi|33863339|ref|NP_894899.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|85813983|emb|CAD20831.2| |
score: 99.8 |
e-value: 3e-21 |
Identity: 28.87% |
Span: 714bp (44.8%) |
Frame: 2 |
| sigma factor [Spinacia oleracea] |
| Match: gi|110169432|gb|ABG53972.1| |
score: 98.2 |
e-value: 7e-22 |
Identity: 29.26% |
Span: 684bp (42.9%) |
Frame: 2 |
| RNA |
| Match: gi|6273430|emb|CAB60192.1| |
score: 97.1 |
e-value: 3e-20 |
Identity: 28.9% |
Span: 651bp (40.8%) |
Frame: 2 |
| putative sigma-like transcription factor [Arabidopsis thaliana] |
| Match: gi|88808921|ref|ZP_01124430.1| |
score: 97.1 |
e-value: 6e-20 |
Identity: 30.35% |
Span: 597bp (37.4%) |
Frame: 2 |
| type |
| Match: gi|13812120|ref|NP_113247.1| |
score: 97.1 |
e-value: 9e-22 |
Identity: 33.71% |
Span: 519bp (32.5%) |
Frame: 2 |
| gi|13812120|ref|NP_113247.1| RNA-polymerase sigma factor [Guillardia theta] gi|25288491|pir||D90084 RNA-polymerase si... |
| Match: gi|88809912|ref|ZP_01125417.1| |
score: 97.1 |
e-value: 6e-20 |
Identity: 30.35% |
Span: 597bp (37.4%) |
Frame: 2 |
| type |
| Match: gi|18404292|ref|NP_565856.1| |
score: 97.1 |
e-value: 3e-20 |
Identity: 28.9% |
Span: 651bp (40.8%) |
Frame: 2 |
| SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|86607034|ref|YP_475797.1| |
score: 95.5 |
e-value: 2e-20 |
Identity: 32.28% |
Span: 564bp (35.4%) |
Frame: 2 |
| RNA |
| Match: gi|87124760|ref|ZP_01080608.1| |
score: 95.1 |
e-value: 1e-19 |
Identity: 29.85% |
Span: 597bp (37.4%) |
Frame: 2 |
| Type |
| Match: gi|7363218|emb|CAB83106.1| |
score: 95.1 |
e-value: 2e-20 |
Identity: 27.55% |
Span: 585bp (36.7%) |
Frame: 2 |
| sigma factor 2 [Sinapis alba] |
| Match: gi|87123242|ref|ZP_01079093.1| |
score: 95.1 |
e-value: 1e-19 |
Identity: 29.85% |
Span: 597bp (37.4%) |
Frame: 2 |
| type |
| Match: gi|15223259|ref|NP_172330.1| |
score: 94.7 |
e-value: 5e-20 |
Identity: 31.25% |
Span: 513bp (32.2%) |
Frame: 2 |
| SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|26452898|dbj|BAC43527.1| |
score: 94.7 |
e-value: 5e-20 |
Identity: 31.25% |
Span: 513bp (32.2%) |
Frame: 2 |
| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana] |
| Match: gi|2353173|gb|AAB69385.1| |
score: 94.7 |
e-value: 5e-20 |
Identity: 31.25% |
Span: 513bp (32.2%) |
Frame: 2 |
| sigma factor 2 [Arabidopsis thaliana] |
| Match: gi|34902100|ref|NP_912396.1| |
score: 94 |
e-value: 5e-20 |
Identity: 27.96% |
Span: 555bp (34.8%) |
Frame: 2 |
| gi|34902100|ref|NP_912396.1| unknown protein [Oryza sativa (japonica cultivar-group)] gi|29893614|gb|AAP06868.1| unkn... |
| Match: gi|87123878|ref|ZP_01079728.1| |
score: 94 |
e-value: 8e-20 |
Identity: 31.12% |
Span: 585bp (36.7%) |
Frame: 2 |
| Sigma-70 |
| Match: gi|108707415|gb|ABF95210.1| |
score: 94 |
e-value: 5e-20 |
Identity: 27.96% |
Span: 555bp (34.8%) |
Frame: 2 |
| Sigma-70 region 3 family protein, expressed [Oryza sativa (japonica cultivar-group)] >gi215695353|dbj|BAG90544.1| unn... |
| Match: gi|78196690|gb|ABB34455.1| |
score: 94 |
e-value: 8e-20 |
Identity: 25.14% |
Span: 1065bp (66.8%) |
Frame: 2 |
| Sigma-70 |
| Match: gi|19910022|dbj|BAB87262.1| |
score: 93.6 |
e-value: 1e-20 |
Identity: 32.57% |
Span: 519bp (32.5%) |
Frame: 2 |
| gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta] |
| Match: gi|15237896|ref|NP_197800.1| |
score: 52.4 |
e-value: 1e-127 |
Identity: 100% |
Span: 75bp (4.7%) |
Frame: 3 |
| SIGE (SIGMA FACTOR E); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor [Arabidopsis tha... |
| Match: gi|30698488|dbj|BAC76601.1| |
score: 47.8 |
e-value: 3e-95 |
Identity: 84% |
Span: 75bp (4.7%) |
Frame: 3 |
| gi|30698488|dbj|BAC76601.1| Sig5 [Oryza sativa (japonica cultivar-group)] gi|30698518|dbj|BAC76607.1| plastid sigma f... |
| Match: gi|56603661|dbj|BAD80742.1| |
score: 47.4 |
e-value: 2e-50 |
Identity: 76.92% |
Span: 78bp (4.9%) |
Frame: 3 |
| gi|56603661|dbj|BAD80742.1| plastid sigma factor PpSIG5 [Physcomitrella patens] |
| Match: gi|75907632|ref|YP_321928.1| |
score: 32.7 |
e-value: 3e-24 |
Identity: 65.22% |
Span: 69bp (4.3%) |
Frame: 3 |
| gi|75907632|ref|YP_321928.1| Sigma 28 (Flagella/Sporulation) [Anabaena variabilis ATCC 29413] >gi|75701357|gb|ABA2103... |
| Match: gi|8118663|gb|AAF73062.1| |
score: 32.7 |
e-value: 1e-24 |
Identity: 65.22% |
Span: 69bp (4.3%) |
Frame: 3 |
| primary |
| Match: gi|19910022|dbj|BAB87262.1| |
score: 32 |
e-value: 1e-20 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| gi|19910022|dbj|BAB87262.1| RNA polymerase sigma factor [Guillardia theta] |
| Match: gi|13812120|ref|NP_113247.1| |
score: 32 |
e-value: 9e-22 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| gi|13812120|ref|NP_113247.1| RNA-polymerase sigma factor [Guillardia theta] gi|25288491|pir||D90084 RNA-polymerase si... |
| Match: gi|110169432|gb|ABG53972.1| |
score: 31.2 |
e-value: 7e-22 |
Identity: 60.87% |
Span: 69bp (4.3%) |
Frame: 3 |
| RNA |
| Match: gi|56750888|ref|YP_171589.1| |
score: 29.3 |
e-value: 5e-23 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| gi|56750888|ref|YP_171589.1| principal RNA polymerase sigma factor RpoD1 [Synechococcus elongatus PCC 6301] >gi|56685... |
| Match: gi|108707415|gb|ABF95210.1| |
score: 29.3 |
e-value: 5e-20 |
Identity: 52.17% |
Span: 69bp (4.3%) |
Frame: 3 |
| Sigma-70 region 3 family protein, expressed [Oryza sativa (japonica cultivar-group)] >gi215695353|dbj|BAG90544.1| unn... |
| Match: gi|7363218|emb|CAB83106.1| |
score: 29.3 |
e-value: 2e-20 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| sigma factor 2 [Sinapis alba] |
| Match: gi|34902100|ref|NP_912396.1| |
score: 29.3 |
e-value: 5e-20 |
Identity: 52.17% |
Span: 69bp (4.3%) |
Frame: 3 |
| gi|34902100|ref|NP_912396.1| unknown protein [Oryza sativa (japonica cultivar-group)] gi|29893614|gb|AAP06868.1| unkn... |
| Match: gi|217140|dbj|BAA01749.1| |
score: 29.3 |
e-value: 5e-23 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| gi|217140|dbj|BAA01749.1| principal sigma factor [Synechococcus sp.] |
| Match: gi|1588486|prf||2208419B |
score: 29.3 |
e-value: 5e-24 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| RNA polymerase sigma factor |
| Match: gi|81299460|ref|YP_399668.1| |
score: 29.3 |
e-value: 5e-23 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| Sigma-70 |
| Match: gi|558881|gb|AAB41506.1| |
score: 29.3 |
e-value: 5e-24 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| gi|558881|gb|AAB41506.1| SigA [Synechococcus sp. PCC 7002] |
| Match: gi|86607034|ref|YP_475797.1| |
score: 28.9 |
e-value: 2e-20 |
Identity: 52.17% |
Span: 69bp (4.3%) |
Frame: 3 |
| RNA |
| Match: gi|87123878|ref|ZP_01079728.1| |
score: 28.5 |
e-value: 8e-20 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| Sigma-70 |
| Match: gi|26452898|dbj|BAC43527.1| |
score: 28.5 |
e-value: 5e-20 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| putative plastid RNA polymerase sigma-subunit SIG1 [Arabidopsis thaliana] |
| Match: gi|2353173|gb|AAB69385.1| |
score: 28.5 |
e-value: 5e-20 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| sigma factor 2 [Arabidopsis thaliana] |
| Match: gi|78196690|gb|ABB34455.1| |
score: 28.5 |
e-value: 8e-20 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| Sigma-70 |
| Match: gi|15223259|ref|NP_172330.1| |
score: 28.5 |
e-value: 5e-20 |
Identity: 56.52% |
Span: 69bp (4.3%) |
Frame: 3 |
| SIG2 (RNA POLYMERASE SIGMA SUBUNIT 2); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|85813983|emb|CAD20831.2| |
score: 27.3 |
e-value: 3e-21 |
Identity: 52.17% |
Span: 69bp (4.3%) |
Frame: 3 |
| sigma factor [Spinacia oleracea] |
| Match: gi|6273430|emb|CAB60192.1| |
score: 26.9 |
e-value: 3e-20 |
Identity: 45.45% |
Span: 66bp (4.1%) |
Frame: 3 |
| putative sigma-like transcription factor [Arabidopsis thaliana] |
| Match: gi|18404292|ref|NP_565856.1| |
score: 26.9 |
e-value: 3e-20 |
Identity: 45.45% |
Span: 66bp (4.1%) |
Frame: 3 |
| SIGF (RNA POLYMERASE SIGMA-SUBUNIT F); DNA binding / DNA-directed RNA polymerase/ sigma factor/ transcription factor ... |
| Match: gi|87124760|ref|ZP_01080608.1| |
score: 26.6 |
e-value: 1e-19 |
Identity: 45.83% |
Span: 72bp (4.5%) |
Frame: 3 |
| Type |
| Match: gi|88809912|ref|ZP_01125417.1| |
score: 25.8 |
e-value: 6e-20 |
Identity: 45.83% |
Span: 72bp (4.5%) |
Frame: 3 |
| type |
| Match: gi|88808921|ref|ZP_01124430.1| |
score: 25.8 |
e-value: 6e-20 |
Identity: 45.83% |
Span: 72bp (4.5%) |
Frame: 3 |
| type |
| Match: gi|33862400|ref|NP_893960.1| |
score: 24.3 |
e-value: 8e-21 |
Identity: 41.67% |
Span: 72bp (4.5%) |
Frame: 3 |
| gi|33862400|ref|NP_893960.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|33863339|ref|NP_894899.1| |
score: 24.3 |
e-value: 8e-21 |
Identity: 41.67% |
Span: 72bp (4.5%) |
Frame: 3 |
| gi|33863339|ref|NP_894899.1| Type II alternative RNA polymerase sigma factor, sigma-70 family [Prochlorococcus marinu... |
| Match: gi|17135717|dbj|BAB78263.1| |
score: 23.5 |
e-value: 4e-23 |
Identity: 50% |
Span: 66bp (4.1%) |
Frame: 3 |
| group |
| Match: gi|75705093|gb|ABA24767.1| |
score: 23.5 |
e-value: 6e-24 |
Identity: 50% |
Span: 66bp (4.1%) |
Frame: 3 |
| Sigma-28 |
| Match: gi|4105839|gb|AAD02575.1| |
score: 23.1 |
e-value: 6e-21 |
Identity: 44% |
Span: 75bp (4.7%) |
Frame: 3 |
| gi|4105839|gb|AAD02575.1| RNA polymerase sigma factor; RpoD2 [Cyanidium caldarium] |
| Match: gi|1405331|dbj|BAA11832.1| |
score: 22.7 |
e-value: 3e-20 |
Identity: 43.48% |
Span: 69bp (4.3%) |
Frame: 3 |
| gi|1405331|dbj|BAA11832.1| chloroplast RNA polymerase sigma subunit [Cyanidium caldarium] |
| Match: gi|75907421|ref|YP_321717.1| |
score: 21.6 |
e-value: 2e-20 |
Identity: 58.82% |
Span: 51bp (3.2%) |
Frame: 3 |
| Sigma |
| Match: gi|23130601|ref|ZP_00112414.1| |
score: 21.6 |
e-value: 2e-22 |
Identity: 58.82% |
Span: 51bp (3.2%) |
Frame: 3 |
| gi|23130601|ref|ZP_00112414.1| COG0568: DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Nostoc punctifo... |
| Match: gi|8489803|gb|AAF75759.1| |
score: 21.6 |
e-value: 2e-20 |
Identity: 58.82% |
Span: 51bp (3.2%) |
Frame: 3 |
| group |
|
| 329 lower scoring hits censored -- only 100 best hits are stored. |
