| arabidopsis/peptide [blastx] | Showing best 1 hits recorded |
| Match: At1G03360.1 |
score: 412 |
e-value: 2e-115 |
Identity: 65.93% |
Span: 948bp (69.3%) |
Frame: -1 |
| Symbols: ATRRP4 | ATRRP4; exonuclease | chr1:824653-826179 FORWARD |
|
| genbank/nr [blastx] | Showing best 83 hits recorded |
| Match: gi|15218790|ref|NP_171835.1| |
score: 412 |
e-value: 2e-113 |
Identity: 65.93% |
Span: 948bp (69.3%) |
Frame: -1 |
| ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease [Arabidopsis thaliana] >gi3850568... |
| Match: gi|50926522|ref|XP_473208.1| |
score: 403 |
e-value: 1e-110 |
Identity: 66.25% |
Span: 948bp (69.3%) |
Frame: -1 |
| gi|50926522|ref|XP_473208.1| OSJNBa0019D11.5 [Oryza sativa (japonica cultivar-group)] >gi|21741863|emb|CAD41453.1| OS... |
| Match: gi|66802526|ref|XP_635135.1| |
score: 212 |
e-value: 3e-53 |
Identity: 40% |
Span: 849bp (62.1%) |
Frame: -1 |
| hypothetical protein DDB_G0291310 [Dictyostelium discoideum AX4] >gi60463454|gb|EAL61639.1| hypothetical protein DDB_... |
| Match: gi|20378673|gb|AAM20932.1| |
score: 202 |
e-value: 4e-50 |
Identity: 44.84% |
Span: 747bp (54.6%) |
Frame: -1 |
| gi|20378673|gb|AAM20932.1| exonuclease [Phytophthora sojae] |
| Match: gi|57222642|gb|AAW40686.1| |
score: 194 |
e-value: 8e-48 |
Identity: 39.69% |
Span: 759bp (55.5%) |
Frame: -1 |
| gi|57222642|gb|AAW40686.1| exosome complex exonuclease rrp4, putative [Cryptococcus neoformans var. neoformans JEC21]... |
| Match: gi|1052797|emb|CAA90501.1| |
score: 193 |
e-value: 2e-47 |
Identity: 48.73% |
Span: 591bp (43.2%) |
Frame: -1 |
| gi|1052797|emb|CAA90501.1| SPAC2F7.14c [Schizosaccharomyces pombe] >gi|19113896|ref|NP_592984.1| hypothetical protein... |
| Match: gi|71021183|ref|XP_760822.1| |
score: 187 |
e-value: 8e-46 |
Identity: 38.4% |
Span: 729bp (53.3%) |
Frame: -1 |
| hypothetical protein UM04675.1 [Ustilago maydis 521] >gi46100196|gb|EAK85429.1| hypothetical protein UM04675.1 [Ustil... |
| Match: gi|66542493|ref|XP_396929.2| |
score: 184 |
e-value: 6e-45 |
Identity: 40.68% |
Span: 786bp (57.5%) |
Frame: -1 |
| gi|66542493|ref|XP_396929.2| PREDICTED: similar to GA17783-PA [Apis mellifera] |
| Match: gi|109469523|ref|XP_001077923.1| |
score: 180 |
e-value: 1e-43 |
Identity: 38.31% |
Span: 906bp (66.2%) |
Frame: -1 |
| PREDICTED: |
| Match: gi|54636264|gb|EAL25667.1| |
score: 180 |
e-value: 1e-43 |
Identity: 39.93% |
Span: 834bp (61.0%) |
Frame: -1 |
| gi|54636264|gb|EAL25667.1| GA17783-PA [Drosophila pseudoobscura] |
| Match: gi|49256126|gb|AAH73011.1| |
score: 179 |
e-value: 4e-43 |
Identity: 52.49% |
Span: 543bp (39.7%) |
Frame: -1 |
| gi|49256126|gb|AAH73011.1| MGC82596 protein [Xenopus laevis] |
| Match: gi|18256844|gb|AAH21807.1| |
score: 179 |
e-value: 4e-43 |
Identity: 37.99% |
Span: 906bp (66.2%) |
Frame: -1 |
| Exosome |
| Match: gi|53136852|emb|CAG32755.1| |
score: 177 |
e-value: 1e-42 |
Identity: 43.21% |
Span: 729bp (53.3%) |
Frame: -1 |
| gi|53136852|emb|CAG32755.1| hypothetical protein [Gallus gallus] >gi|61098302|ref|NP_001012816.1| exosome component 2... |
| Match: gi|72179686|ref|XP_789513.1| |
score: 177 |
e-value: 8e-43 |
Identity: 50.29% |
Span: 525bp (38.4%) |
Frame: -1 |
| gi|72179686|ref|XP_789513.1| PREDICTED: similar to Exosome complex exonuclease RRP4 (Ribosomal RNA processing protein... |
| Match: gi|76631046|ref|XP_873758.1| |
score: 176 |
e-value: 2e-42 |
Identity: 38.96% |
Span: 906bp (66.2%) |
Frame: -1 |
| gi|76631046|ref|XP_873758.1| PREDICTED: similar to Exosome complex exonuclease RRP4 (Ribosomal RNA processing protein... |
| Match: gi|108870702|gb|EAT34927.1| |
score: 175 |
e-value: 5e-42 |
Identity: 37.33% |
Span: 876bp (64.0%) |
Frame: -1 |
| rrp4 |
| Match: gi|60688075|gb|AAH91582.1| |
score: 175 |
e-value: 5e-42 |
Identity: 53.29% |
Span: 501bp (36.6%) |
Frame: -1 |
| gi|60688075|gb|AAH91582.1| Exosc2_predicted-prov protein [Xenopus tropicalis] >gi|71895889|ref|NP_001025658.1| exosc2... |
| Match: gi|73967942|ref|XP_850770.1| |
score: 174 |
e-value: 9e-42 |
Identity: 47.06% |
Span: 612bp (44.7%) |
Frame: -1 |
| gi|73967942|ref|XP_850770.1| PREDICTED: similar to Exosome complex exonuclease RRP4 (Ribosomal RNA processing protein... |
| Match: gi|21428348|gb|AAM49834.1| |
score: 174 |
e-value: 9e-42 |
Identity: 38.13% |
Span: 834bp (61.0%) |
Frame: -1 |
| gi|21428348|gb|AAM49834.1| GM02257p [Drosophila melanogaster] |
| Match: gi|24762324|ref|NP_611807.1| |
score: 174 |
e-value: 9e-42 |
Identity: 38.13% |
Span: 834bp (61.0%) |
Frame: -1 |
| gi|24762324|ref|NP_611807.1| CG3931-PA [Drosophila melanogaster] gi|7291605|gb|AAF47028.1| CG3931-PA [Drosophila mela... |
| Match: gi|50549949|ref|XP_502446.1| |
score: 173 |
e-value: 2e-41 |
Identity: 37.4% |
Span: 786bp (57.5%) |
Frame: -1 |
| gi|50549949|ref|XP_502446.1| hypothetical protein [Yarrowia lipolytica] >gi|49648314|emb|CAG80634.1| unnamed protein ... |
| Match: gi|109110020|ref|XP_001106567.1| |
score: 172 |
e-value: 3e-41 |
Identity: 46.57% |
Span: 612bp (44.7%) |
Frame: -1 |
| PREDICTED: |
| Match: gi|19923403|ref|NP_055100.2| |
score: 172 |
e-value: 3e-41 |
Identity: 47.06% |
Span: 612bp (44.7%) |
Frame: -1 |
| gi|19923403|ref|NP_055100.2| homolog of Yeast RRP4 (ribosomal RNA processing 4), 3'-5'-exorib [Homo sapiens] gi|13878... |
| Match: gi|6321860|ref|NP_011936.1| |
score: 172 |
e-value: 3e-41 |
Identity: 35.69% |
Span: 831bp (60.7%) |
Frame: -1 |
| gi|6321860|ref|NP_011936.1| Ribosomal RNA Processing; Rrp4p [Saccharomyces cerevisiae] gi|731671|sp|P38792|RRP4_YEAST... |
| Match: gi|91078208|ref|XP_968880.1| |
score: 170 |
e-value: 2e-40 |
Identity: 42.93% |
Span: 615bp (45.0%) |
Frame: -1 |
| PREDICTED: |
| Match: gi|62204282|gb|AAH92739.1| |
score: 169 |
e-value: 4e-40 |
Identity: 51.5% |
Span: 501bp (36.6%) |
Frame: -1 |
| gi|62204282|gb|AAH92739.1| Hypothetical protein LOC550234 [Danio rerio] >gi|62955121|ref|NP_001017572.1| hypothetical... |
| Match: gi|50309037|ref|XP_454524.1| |
score: 168 |
e-value: 6e-40 |
Identity: 35.74% |
Span: 825bp (60.3%) |
Frame: -1 |
| gi|50309037|ref|XP_454524.1| unnamed protein product [Kluyveromyces lactis] >gi|49643659|emb|CAG99611.1| unnamed prot... |
| Match: gi|47223594|emb|CAF99203.1| |
score: 167 |
e-value: 8e-40 |
Identity: 44.79% |
Span: 576bp (42.1%) |
Frame: -1 |
| gi|47223594|emb|CAF99203.1| unnamed protein product [Tetraodon nigroviridis] |
| Match: gi|44980136|gb|AAS50332.1| |
score: 166 |
e-value: 2e-39 |
Identity: 41.52% |
Span: 672bp (49.1%) |
Frame: -1 |
| gi|44980136|gb|AAS50332.1| AAL034Cp [Ashbya gossypii ATCC 10895] >gi|45184790|ref|NP_982508.1| AAL034Cp [Eremothecium... |
| Match: gi|14574491|gb|AAK68595.1| |
score: 166 |
e-value: 3e-39 |
Identity: 34.35% |
Span: 786bp (57.5%) |
Frame: -1 |
| gi|14574491|gb|AAK68595.1| Hypothetical protein Y73B6BL.3 [Caenorhabditis elegans] >gi|17544090|ref|NP_500978.1| Y73B... |
| Match: gi|39584168|emb|CAE61543.1| |
score: 166 |
e-value: 3e-39 |
Identity: 34.73% |
Span: 786bp (57.5%) |
Frame: -1 |
| gi|39584168|emb|CAE61543.1| Hypothetical protein CBG05449 [Caenorhabditis briggsae] |
| Match: gi|49526419|emb|CAG60043.1| |
score: 165 |
e-value: 5e-39 |
Identity: 43% |
Span: 600bp (43.9%) |
Frame: -1 |
| unnamed |
| Match: gi|76631050|ref|XP_886981.1| |
score: 164 |
e-value: 9e-39 |
Identity: 37.99% |
Span: 906bp (66.2%) |
Frame: -1 |
| gi|76631050|ref|XP_886981.1| PREDICTED: similar to Exosome complex exonuclease RRP4 (Ribosomal RNA processing protein... |
| Match: gi|83773174|dbj|BAE63301.1| |
score: 162 |
e-value: 4e-38 |
Identity: 34.22% |
Span: 789bp (57.7%) |
Frame: -1 |
| unnamed |
| Match: gi|46136891|ref|XP_390137.1| |
score: 162 |
e-value: 4e-38 |
Identity: 37.96% |
Span: 705bp (51.5%) |
Frame: -1 |
| gi|46136891|ref|XP_390137.1| hypothetical protein FG09961.1 [Gibberella zeae PH-1] >gi|42544856|gb|EAA67699.1| hypoth... |
| Match: gi|49657959|emb|CAG90795.1| |
score: 162 |
e-value: 3e-38 |
Identity: 40.38% |
Span: 636bp (46.5%) |
Frame: -1 |
| gi|49657959|emb|CAG90795.1| unnamed protein product [Debaryomyces hansenii CBS767] >gi|50427353|ref|XP_462289.1| unna... |
| Match: gi|55244756|gb|EAA05284.2| |
score: 160 |
e-value: 1e-37 |
Identity: 40.61% |
Span: 669bp (48.9%) |
Frame: -1 |
| gi|55244756|gb|EAA05284.2| ENSANGP00000011203 [Anopheles gambiae str. PEST] >gi|58377136|ref|XP_309432.2| ENSANGP0000... |
| Match: gi|71000673|ref|XP_755018.1| |
score: 160 |
e-value: 1e-37 |
Identity: 33.22% |
Span: 795bp (58.1%) |
Frame: -1 |
| exonuclease |
| Match: gi|67467767|ref|XP_649967.1| |
score: 159 |
e-value: 3e-37 |
Identity: 42.25% |
Span: 561bp (41.0%) |
Frame: -1 |
| exosome |
| Match: gi|29150123|emb|CAD79683.1| |
score: 155 |
e-value: 4e-36 |
Identity: 35.84% |
Span: 792bp (57.9%) |
Frame: -1 |
| gi|29150123|emb|CAD79683.1| related to 3'->5' exoribonuclease [Neurospora crassa] >gi|32405430|ref|XP_323328.1| hypot... |
| Match: gi|68486254|ref|XP_712984.1| |
score: 155 |
e-value: 5e-36 |
Identity: 35.79% |
Span: 789bp (57.7%) |
Frame: -1 |
| gi|68486254|ref|XP_712984.1| putative exosome component Rrp4p [Candida albicans SC5314] >gi|68486193|ref|XP_709945.1|... |
| Match: gi|71406615|ref|XP_805831.1| |
score: 151 |
e-value: 6e-35 |
Identity: 35.48% |
Span: 738bp (53.9%) |
Frame: -1 |
| gi|71406615|ref|XP_805831.1| exosome complex exonuclease, putative [Trypanosoma cruzi] >gi|70869391|gb|EAN83980.1| ex... |
| Match: gi|71422268|ref|XP_812081.1| |
score: 150 |
e-value: 2e-34 |
Identity: 35.08% |
Span: 738bp (53.9%) |
Frame: -1 |
| gi|71422268|ref|XP_812081.1| exosome complex exonuclease, putative [Trypanosoma cruzi] >gi|70876819|gb|EAN90230.1| ex... |
| Match: gi|67525937|ref|XP_661030.1| |
score: 150 |
e-value: 1e-34 |
Identity: 33.94% |
Span: 738bp (53.9%) |
Frame: -1 |
| gi|67525937|ref|XP_661030.1| hypothetical protein AN3426.2 [Aspergillus nidulans FGSC A4] >gi|40743715|gb|EAA62903.1|... |
| Match: gi|14250901|emb|CAC39255.1| |
score: 149 |
e-value: 4e-34 |
Identity: 39.11% |
Span: 738bp (53.9%) |
Frame: -1 |
| gi|14250901|emb|CAC39255.1| Rrp4p homologue [Trypanosoma brucei] |
| Match: gi|62175654|gb|AAX69786.1| |
score: 149 |
e-value: 4e-34 |
Identity: 39.11% |
Span: 738bp (53.9%) |
Frame: -1 |
| gi|62175654|gb|AAX69786.1| ribosomal RNA processing protein 4 [Trypanosoma brucei] >gi|70802626|gb|AAZ12531.1| riboso... |
| Match: gi|68125215|emb|CAJ02553.1| |
score: 149 |
e-value: 2e-34 |
Identity: 35.89% |
Span: 735bp (53.7%) |
Frame: -1 |
| gi|68125215|emb|CAJ02553.1| exosome complex exonuclease, putative; ribosomal RNA processing protein 4, putative [Leis... |
| Match: gi|111056702|gb|EAT77822.1| |
score: 148 |
e-value: 5e-34 |
Identity: 35.07% |
Span: 765bp (55.9%) |
Frame: -1 |
| hypothetical |
| Match: gi|89301626|gb|EAR99614.1| |
score: 147 |
e-value: 1e-33 |
Identity: 42.54% |
Span: 543bp (39.7%) |
Frame: -1 |
| hypothetical |
| Match: gi|39945960|ref|XP_362517.1| |
score: 142 |
e-value: 4e-32 |
Identity: 31.67% |
Span: 747bp (54.6%) |
Frame: -1 |
| gi|39945960|ref|XP_362517.1| hypothetical protein MG08100.4 [Magnaporthe grisea 70-15] |
| Match: gi|88177168|gb|EAQ84636.1| |
score: 139 |
e-value: 4e-31 |
Identity: 45.51% |
Span: 444bp (32.5%) |
Frame: -1 |
| hypothetical |
| Match: gi|87241199|gb|ABD33057.1| |
score: 137 |
e-value: 1e-30 |
Identity: 62.26% |
Span: 318bp (23.2%) |
Frame: -1 |
| Nucleic |
| Match: gi|19074743|ref|NP_586249.1| |
score: 136 |
e-value: 2e-30 |
Identity: 38.59% |
Span: 549bp (40.1%) |
Frame: -1 |
| gi|19074743|ref|NP_586249.1| similarity to HYPOTHETICAL PROTEIN YAZE_SCHPO [Encephalitozoon cuniculi] gi|19069385|emb... |
| Match: gi|90307050|gb|EAS36681.1| |
score: 135 |
e-value: 3e-30 |
Identity: 41.57% |
Span: 459bp (33.6%) |
Frame: -1 |
| hypothetical |
| Match: gi|55632481|ref|XP_520318.1| |
score: 132 |
e-value: 4e-29 |
Identity: 46.06% |
Span: 495bp (36.2%) |
Frame: -1 |
| gi|55632481|ref|XP_520318.1| PREDICTED: similar to Exosome complex exonuclease RRP4 (Ribosomal RNA processing protein... |
| Match: gi|71030016|ref|XP_764650.1| |
score: 130 |
e-value: 1e-28 |
Identity: 31.33% |
Span: 747bp (54.6%) |
Frame: -1 |
| hypothetical |
| Match: gi|76631048|ref|XP_886963.1| |
score: 129 |
e-value: 4e-28 |
Identity: 33.55% |
Span: 903bp (66.0%) |
Frame: -1 |
| gi|76631048|ref|XP_886963.1| PREDICTED: similar to Exosome complex exonuclease RRP4 (Ribosomal RNA processing protein... |
| Match: gi|70934048|ref|XP_738308.1| |
score: 125 |
e-value: 6e-27 |
Identity: 31.41% |
Span: 798bp (58.3%) |
Frame: -1 |
| gi|70934048|ref|XP_738308.1| exosome complex exonuclease rrp4, putative [Plasmodium chabaudi] >gi|56514419|emb|CAH797... |
| Match: gi|514266|gb|AAB60392.1| |
score: 125 |
e-value: 5e-27 |
Identity: 38.73% |
Span: 612bp (44.7%) |
Frame: -1 |
| gi|514266|gb|AAB60392.1| unknown [Homo sapiens] |
| Match: gi|83286482|ref|XP_730181.1| |
score: 122 |
e-value: 3e-26 |
Identity: 32.92% |
Span: 720bp (52.6%) |
Frame: -1 |
| hypothetical |
| Match: gi|68073645|ref|XP_678737.1| |
score: 122 |
e-value: 3e-26 |
Identity: 32.92% |
Span: 720bp (52.6%) |
Frame: -1 |
| gi|68073645|ref|XP_678737.1| exosome complex exonuclease rrp4, putative [Plasmodium berghei] >gi|56499299|emb|CAI0465... |
| Match: gi|65302786|emb|CAI74893.1| |
score: 120 |
e-value: 2e-25 |
Identity: 35.36% |
Span: 543bp (39.7%) |
Frame: -1 |
| gi|65302786|emb|CAI74893.1| hypothetical protein, conserved [Theileria annulata] |
| Match: gi|6562740|emb|CAB62879.1| |
score: 119 |
e-value: 3e-25 |
Identity: 30.83% |
Span: 720bp (52.6%) |
Frame: -1 |
| exosome |
| Match: gi|71074701|ref|XP_769885.1| |
score: 112 |
e-value: 4e-23 |
Identity: 30.56% |
Span: 753bp (55.0%) |
Frame: -1 |
| gi|71074701|ref|XP_769885.1| hypothetical protein GLP_741_57068_56280 [Giardia lamblia ATCC 50803] >gi|29248172|gb|EA... |
| Match: gi|87241199|gb|ABD33057.1| |
score: 92.8 |
e-value: 3e-17 |
Identity: 43.85% |
Span: 390bp (28.5%) |
Frame: -1 |
| Nucleic |
| Match: gi|67609946|ref|XP_667071.1| |
score: 80.9 |
e-value: 1e-13 |
Identity: 32.7% |
Span: 468bp (34.2%) |
Frame: -1 |
| gi|67609946|ref|XP_667071.1| hypothetical protein Chro.80348 [Cryptosporidium hominis] >gi|54658162|gb|EAL36838.1| hy... |
| Match: gi|57641570|ref|YP_184048.1| |
score: 76.6 |
e-value: 2e-12 |
Identity: 27.18% |
Span: 597bp (43.6%) |
Frame: -1 |
| exosome |
| Match: gi|110605656|ref|ZP_01393702.1| |
score: 70.1 |
e-value: 2e-10 |
Identity: 30.85% |
Span: 540bp (39.5%) |
Frame: -1 |
| KH, |
| Match: gi|21228724|ref|NP_634646.1| |
score: 68.6 |
e-value: 7e-10 |
Identity: 27.37% |
Span: 555bp (40.6%) |
Frame: -1 |
| gi|21228724|ref|NP_634646.1| hypothetical protein [Methanosarcina mazei Goe1] gi|29336796|sp|Q8PTT9|ECR1_METMA Probab... |
| Match: gi|29336574|sp|O26780|ECR1_METTH |
score: 68.6 |
e-value: 7e-10 |
Identity: 23.94% |
Span: 624bp (45.6%) |
Frame: -1 |
| Probable |
| Match: gi|5458041|emb|CAB49531.1| |
score: 66.6 |
e-value: 3e-09 |
Identity: 24.74% |
Span: 561bp (41.0%) |
Frame: -1 |
| Predicted |
| Match: gi|18893711|gb|AAL81693.1| |
score: 65.5 |
e-value: 6e-09 |
Identity: 25.58% |
Span: 495bp (36.2%) |
Frame: -1 |
| hypothetical |
| Match: gi|110621976|emb|CAJ37254.1| |
score: 65.1 |
e-value: 7e-09 |
Identity: 25.69% |
Span: 639bp (46.7%) |
Frame: -1 |
| putative |
| Match: gi|84490038|ref|YP_448270.1| |
score: 64.7 |
e-value: 1e-08 |
Identity: 23.11% |
Span: 612bp (44.7%) |
Frame: -1 |
| putative |
| Match: gi|18160693|gb|AAL64028.1| |
score: 64.3 |
e-value: 1e-08 |
Identity: 28.03% |
Span: 453bp (33.1%) |
Frame: -1 |
| conserved |
| Match: gi|29336577|sp|O29758|ECR1_ARCFU |
score: 63.5 |
e-value: 2e-08 |
Identity: 23.87% |
Span: 627bp (45.8%) |
Frame: -1 |
| Probable |
| Match: gi|83754324|pdb|2BA0|C |
score: 63.5 |
e-value: 2e-08 |
Identity: 23.87% |
Span: 627bp (45.8%) |
Frame: -1 |
| Chain |
| Match: gi|72397145|gb|AAZ71418.1| |
score: 63.2 |
e-value: 3e-08 |
Identity: 25.79% |
Span: 555bp (40.6%) |
Frame: -1 |
| RNA-binding |
| Match: gi|14591334|ref|NP_143412.1| |
score: 62.8 |
e-value: 4e-08 |
Identity: 24% |
Span: 579bp (42.3%) |
Frame: -1 |
| gi|14591334|ref|NP_143412.1| hypothetical protein PH1551 [Pyrococcus horikoshii] gi|29336583|sp|O59221|ECR1_PYRHO Pro... |
| Match: gi|19915671|gb|AAM05183.1| |
score: 61.6 |
e-value: 8e-08 |
Identity: 26.32% |
Span: 555bp (40.6%) |
Frame: -1 |
| RNA-binding |
| Match: gi|19886743|gb|AAM01597.1| |
score: 57.8 |
e-value: 1e-06 |
Identity: 26.7% |
Span: 501bp (36.6%) |
Frame: -1 |
| Predicted |
| Match: gi|68141087|gb|EAM94378.1| |
score: 56.2 |
e-value: 3e-06 |
Identity: 23.5% |
Span: 576bp (42.1%) |
Frame: -1 |
| KH |
| Match: gi|48430115|gb|AAT42980.1| |
score: 54.7 |
e-value: 1e-05 |
Identity: 24.06% |
Span: 537bp (39.3%) |
Frame: -1 |
| 3'-5' |
|
| 12 lower scoring hits censored -- only 83 best hits are stored. |
