| genbank/nr [blastx] | Showing best 25 hits recorded |
| Match: gi|67515338|gb|AAY68198.1| |
score: 502 |
e-value: 3e-140 |
Identity: 88.54% |
Span: 864bp (79.9%) |
Frame: 2 |
| RNA polymerase IV second largest subunit [Rhododendron macrophyllum] |
| Match: gi|67515342|gb|AAY68200.1| |
score: 496 |
e-value: 2e-138 |
Identity: 86.85% |
Span: 867bp (80.2%) |
Frame: 2 |
| RNA polymerase IV second largest subunit [Antirrhinum majus] |
| Match: gi|255548744|ref|XP_002515428.1| |
score: 494 |
e-value: 5e-138 |
Identity: 86.16% |
Span: 867bp (80.2%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit, putative [Ricinus communis] >gi223545372|gb|EEF46877.1| DNA-directed RNA polymer... |
| Match: gi|270231812|emb|CBI21137.1| |
score: 490 |
e-value: 1e-136 |
Identity: 84.78% |
Span: 867bp (80.2%) |
Frame: 2 |
| unnamed protein product [Vitis vinifera] |
| Match: gi|225430474|ref|XP_002283296.1| |
score: 490 |
e-value: 1e-136 |
Identity: 84.78% |
Span: 867bp (80.2%) |
Frame: 2 |
| PREDICTED: hypothetical protein [Vitis vinifera] |
| Match: gi|224141967|ref|XP_002324332.1| |
score: 489 |
e-value: 2e-136 |
Identity: 86.11% |
Span: 864bp (79.9%) |
Frame: 2 |
| predicted protein [Populus trichocarpa] >gi222865766|gb|EEF02897.1| predicted protein [Populus trichocarpa] |
| Match: gi|222629653|gb|EEE61785.1| |
score: 459 |
e-value: 2e-127 |
Identity: 79.93% |
Span: 867bp (80.2%) |
Frame: 2 |
| hypothetical protein OsJ_16357 [Oryza sativa Japonica Group] |
| Match: gi|218195684|gb|EEC78111.1| |
score: 459 |
e-value: 2e-127 |
Identity: 79.93% |
Span: 867bp (80.2%) |
Frame: 2 |
| hypothetical protein OsI_17620 [Oryza sativa Indica Group] |
| Match: gi|115460882|ref|NP_001054041.1| |
score: 459 |
e-value: 2e-127 |
Identity: 79.93% |
Span: 867bp (80.2%) |
Frame: 2 |
| Os04g0641000 [Oryza sativa (japonica cultivar-group)] >gi113565612|dbj|BAF15955.1| Os04g0641000 [Oryza sativa Japonic... |
| Match: gi|90399221|emb|CAJ86030.1| |
score: 459 |
e-value: 2e-127 |
Identity: 79.93% |
Span: 867bp (80.2%) |
Frame: 2 |
| B0414F07.4 [Oryza sativa (indica cultivar-group)] |
| Match: gi|38347314|emb|CAE05960.2| |
score: 459 |
e-value: 2e-127 |
Identity: 79.93% |
Span: 867bp (80.2%) |
Frame: 2 |
| OSJNBa0063C18.1 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|38344903|emb|CAD41847.2| |
score: 459 |
e-value: 2e-127 |
Identity: 79.93% |
Span: 867bp (80.2%) |
Frame: 2 |
| OSJNBb0079B02.6 [Oryza sativa (japonica cultivar-group)] |
| Match: gi|51970364|dbj|BAD43874.1| |
score: 459 |
e-value: 3e-127 |
Identity: 77.67% |
Span: 867bp (80.2%) |
Frame: 2 |
| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana] |
| Match: gi|79416709|ref|NP_189020.2| |
score: 457 |
e-value: 7e-127 |
Identity: 77.33% |
Span: 867bp (80.2%) |
Frame: 2 |
| NRPD2A; DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] >gi9293951|dbj|BAB01854.1| DNA-directed RNA ... |
| Match: gi|242041665|ref|XP_002468227.1| |
score: 456 |
e-value: 3e-126 |
Identity: 78.2% |
Span: 867bp (80.2%) |
Frame: 2 |
| hypothetical protein SORBIDRAFT_01g042100 [Sorghum bicolor] >gi241922081|gb|EER95225.1| hypothetical protein SORBIDRA... |
| Match: gi|145338664|ref|NP_188437.2| |
score: 454 |
e-value: 6e-126 |
Identity: 76.41% |
Span: 867bp (80.2%) |
Frame: 2 |
| NRPD2b; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding [Arabidopsis thaliana] |
| Match: gi|67810790|gb|AAY82004.1| |
score: 454 |
e-value: 6e-126 |
Identity: 76.41% |
Span: 867bp (80.2%) |
Frame: 2 |
| RNA polymerase IV second largest subunit [Arabidopsis thaliana] |
| Match: gi|9294064|dbj|BAB02021.1| |
score: 454 |
e-value: 6e-126 |
Identity: 76.41% |
Span: 867bp (80.2%) |
Frame: 2 |
| DNA-dependent RNA polymerase II [Arabidopsis thaliana] |
| Match: gi|283443700|gb|ADB19859.1| |
score: 454 |
e-value: 8e-126 |
Identity: 77.85% |
Span: 867bp (80.2%) |
Frame: 2 |
| mutant required to maintain repression 7-2/ RNA polymerase D second largest subunit 2-2 [Zea mays] |
| Match: gi|283443696|gb|ADB19857.1| |
score: 454 |
e-value: 8e-126 |
Identity: 77.85% |
Span: 867bp (80.2%) |
Frame: 2 |
| required to maintain repression 7/RNA polymerase D second largest subunit [Zea mays] |
| Match: gi|66356143|gb|AAY45706.1| |
score: 454 |
e-value: 8e-126 |
Identity: 77.85% |
Span: 867bp (80.2%) |
Frame: 2 |
| RNA polymerase IV second largest subunit [Zea mays] |
| Match: gi|242074526|ref|XP_002447199.1| |
score: 454 |
e-value: 1e-125 |
Identity: 78.2% |
Span: 867bp (80.2%) |
Frame: 2 |
| hypothetical protein SORBIDRAFT_06g030300 [Sorghum bicolor] >gi241938382|gb|EES11527.1| hypothetical protein SORBIDRA... |
| Match: gi|109289916|gb|ABG29322.1| |
score: 439 |
e-value: 2e-121 |
Identity: 86.26% |
Span: 786bp (72.7%) |
Frame: 2 |
| DNA-directed RNA polymerase II 135 kDa polypeptide, putative [Solanum bulbocastanum] |
| Match: gi|242080725|ref|XP_002445131.1| |
score: 424 |
e-value: 1e-116 |
Identity: 74.65% |
Span: 861bp (79.6%) |
Frame: 2 |
| hypothetical protein SORBIDRAFT_07g004600 [Sorghum bicolor] >gi241941481|gb|EES14626.1| hypothetical protein SORBIDRA... |
| Match: gi|125602346|gb|EAZ41671.1| |
score: 413 |
e-value: 2e-113 |
Identity: 72.95% |
Span: 864bp (79.9%) |
Frame: 2 |
| hypothetical protein OsJ_26208 [Oryza sativa Japonica Group] |
|
| 225 lower scoring hits censored -- only 25 best hits are stored. |
| arabidopsis/peptide [blastx] | Showing best 6 hits recorded |
| Match: At3G23780.1 |
score: 457 |
e-value: 4e-129 |
Identity: 77.33% |
Span: 867bp (80.2%) |
Frame: 2 |
| Symbols: DRD2, NRPD2, NRPD2a | NRPD2a (NUCLEAR RNA POLYMERASE D 2A); DNA binding / DNA-directed RNA polymerase | chr... |
| Match: At3G18090.1 |
score: 454 |
e-value: 3e-128 |
Identity: 76.41% |
Span: 867bp (80.2%) |
Frame: 2 |
| Symbols: NRPD2b | NRPD2b (nuclear RNA polymerase D 2b); DNA binding / DNA-directed RNA polymerase | chr3:6195329-620... |
| Match: At4G21710.1 |
score: 265 |
e-value: 4e-71 |
Identity: 48.43% |
Span: 861bp (79.6%) |
Frame: 2 |
| Symbols: EMB1989, RPB2, NRPB2 | NRPB2 (EMBRYO DEFECTIVE 1989); DNA binding | chr4:11535696-11542212 REVERSE |
| Match: At5G45140.1 |
score: 204 |
e-value: 6e-53 |
Identity: 39.78% |
Span: 822bp (76.0%) |
Frame: 2 |
| Symbols: NRPC2 | NRPC2 (nuclear RNA polymerase C 2); DNA binding / DNA-directed RNA polymerase | chr5:18264643-18274... |
| Match: At1G29940.1 |
score: 188 |
e-value: 6e-48 |
Identity: 42.61% |
Span: 771bp (71.3%) |
Frame: 2 |
| Symbols: NRPA2 | NRPA2 (nuclear RNA polymerase A 2); DNA-directed RNA polymerase | chr1:10479306-10486654 REVERSE |
| Match: AtCG00190.1 |
score: 84 |
e-value: 2e-16 |
Identity: 27.78% |
Span: 765bp (70.8%) |
Frame: 2 |
| Symbols: RPOB | Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a... |
|
| swissprot [blastx] | Showing best 25 hits recorded |
| Match: P38420 |
score: 265 |
e-value: 4e-70 |
Identity: 48.43% |
Span: 861bp (79.6%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Arabidopsis thaliana GN=RPB135 PE=2 SV=2 |
| Match: Q42877 |
score: 265 |
e-value: 5e-70 |
Identity: 48.42% |
Span: 855bp (79.1%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Solanum lycopersicum GN=RPB2 PE=2 SV=1 |
| Match: Q54J75 |
score: 259 |
e-value: 2e-68 |
Identity: 48.42% |
Span: 855bp (79.1%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit rpb2 OS=Dictyostelium discoideum GN=polr2b PE=3 SV=1 |
| Match: A5DHT2 |
score: 252 |
e-value: 3e-66 |
Identity: 46.74% |
Span: 873bp (80.8%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Pichia guilliermondii GN=RPB2 PE=3 SV=3 |
| Match: Q753Q4 |
score: 249 |
e-value: 2e-65 |
Identity: 47.37% |
Span: 855bp (79.1%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii GN=RPB2 PE=3 SV=1 |
| Match: P08518 |
score: 245 |
e-value: 3e-64 |
Identity: 46.15% |
Span: 855bp (79.1%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces cerevisiae GN=RPB2 PE=1 SV=2 |
| Match: Q6FLD5 |
score: 245 |
e-value: 4e-64 |
Identity: 45.8% |
Span: 855bp (79.1%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata GN=RPB2 PE=3 SV=1 |
| Match: Q02061 |
score: 243 |
e-value: 1e-63 |
Identity: 47.37% |
Span: 855bp (79.1%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Schizosaccharomyces pombe GN=rpb2 PE=1 SV=2 |
| Match: Q8SR75 |
score: 239 |
e-value: 3e-62 |
Identity: 46.24% |
Span: 837bp (77.4%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Encephalitozoon cuniculi GN=RPB2 PE=3 SV=1 |
| Match: Q10578 |
score: 239 |
e-value: 3e-62 |
Identity: 45% |
Span: 837bp (77.4%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Caenorhabditis elegans GN=rpb-2 PE=2 SV=2 |
| Match: P08266 |
score: 237 |
e-value: 9e-62 |
Identity: 46.98% |
Span: 837bp (77.4%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Drosophila melanogaster GN=RpII140 PE=2 SV=2 |
| Match: Q8CFI7 |
score: 235 |
e-value: 4e-61 |
Identity: 46.43% |
Span: 837bp (77.4%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Mus musculus GN=Polr2b PE=2 SV=2 |
| Match: P30876 |
score: 235 |
e-value: 4e-61 |
Identity: 46.43% |
Span: 837bp (77.4%) |
Frame: 2 |
| DNA-directed RNA polymerase II subunit RPB2 OS=Homo sapiens GN=POLR2B PE=1 SV=1 |
| Match: O27124 |
score: 227 |
e-value: 1e-58 |
Identity: 46.88% |
Span: 861bp (79.6%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Methanobacterium thermoautotrophicum GN=rpoB1 PE=3 SV=1 |
| Match: P22276 |
score: 221 |
e-value: 9e-57 |
Identity: 43.77% |
Span: 843bp (78.0%) |
Frame: 2 |
| DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae GN=RET1 PE=1 SV=2 |
| Match: P41557 |
score: 218 |
e-value: 6e-56 |
Identity: 43.45% |
Span: 849bp (78.5%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpoB1 PE=3 SV=2 |
| Match: P15351 |
score: 217 |
e-value: 1e-55 |
Identity: 42.91% |
Span: 861bp (79.6%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Halobacterium salinarium GN=rpoB1 PE=1 SV=3 |
| Match: Q10233 |
score: 216 |
e-value: 3e-55 |
Identity: 43.32% |
Span: 831bp (76.9%) |
Frame: 2 |
| DNA-directed RNA polymerase III subunit RPC2 OS=Schizosaccharomyces pombe GN=rpc2 PE=2 SV=1 |
| Match: P09845 |
score: 215 |
e-value: 5e-55 |
Identity: 43.6% |
Span: 861bp (79.6%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Methanobacterium thermoautotrophicum (strain Winter) GN=rpoB1 PE=3 SV=2 |
| Match: P25167 |
score: 215 |
e-value: 5e-55 |
Identity: 41.11% |
Span: 861bp (79.6%) |
Frame: 2 |
| DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII128 PE=1 SV=2 |
| Match: P31814 |
score: 211 |
e-value: 9e-54 |
Identity: 43.37% |
Span: 834bp (77.2%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B OS=Thermococcus celer GN=rpoB PE=3 SV=1 |
| Match: Q60181 |
score: 210 |
e-value: 1e-53 |
Identity: 44.25% |
Span: 840bp (77.7%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Methanocaldococcus jannaschii GN=rpoB1 PE=3 SV=1 |
| Match: O28392 |
score: 208 |
e-value: 6e-53 |
Identity: 43.06% |
Span: 843bp (78.0%) |
Frame: 2 |
| DNA-directed RNA polymerase subunit B' OS=Archaeoglobus fulgidus GN=rpoB1 PE=4 SV=1 |
| Match: Q54BM1 |
score: 207 |
e-value: 1e-52 |
Identity: 43.18% |
Span: 780bp (72.2%) |
Frame: 2 |
| DNA-directed RNA polymerase I subunit rpa2 OS=Dictyostelium discoideum GN=polr1b PE=3 SV=1 |
| Match: Q9H9Y6 |
score: 204 |
e-value: 9e-52 |
Identity: 40.41% |
Span: 846bp (78.3%) |
Frame: 2 |
| DNA-directed RNA polymerase I subunit RPA2 OS=Homo sapiens GN=POLR1B PE=1 SV=2 |
|
| 225 lower scoring hits censored -- only 25 best hits are stored. |
