EST details — SGN-E669542
| Search information |
| Request: 669542 | Match: SGN-E669542 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C458209 | Clone name: cccs46w22h23 |
| ||
| Library Name: cccs46w | Organism: Coffea canephora |
Tissue: Endosperm and perisperm
Development Stage: 46 week after pollination
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
No additional reads found.[Show information hierarchy]
| Sequence |
| Sequence Id: SGN-E669542 | Length: 864 bp (1247 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E669542 [] (trimmed)
GGGTTACTGAGGTTGCAGAAAGCTCACAAAGAAATTTCAGTTTCGGAGCGGATCTTGGACATCAGGAGCCAGCCCCATTTGACTTATCTGCTGCA
GCGTCTGATGTTAGGCATTCTAATGCTCACTCTACGAACCACCAATCAAGACTTATCTCATCAACTGAATCGCCTGAACTGAGAACTCCGTTTTC
TCGTCCACTGAATTTAAACAGTAACCCAAGTCAGTCTCCTTTCATGCATGTGCATGGTTTGGCAAGAAATATGCTTCCGATTTCTTGGAGTGGAT
CTCTTAACTCAAGAGGTGGTGCTTCATCCAGTCCTATTTTGTTTTCAGGGGAAAGAGGTGCTGCAGTAAGGGATGAAGCCAATTTCAGAGGCTCG
CTAAGCAACAACCCAGAGCATCCTAGTTTTGTTGCTGCTCGTGAGAGCAGGCACATGGTACAAGAACCAACAGCTTGGAGTTTTTCACCTGGAAA
TACTGGCTCTTCAAGAAATGTTCCTTCTAGTTCTCGATATACTCCTAATTCTGGTACAGGACCTCTCCCAACTGTCTGGATGCCTCATCAAAATG
TAGCAGCACATAATCAGCAGAGGTTGTCCGAATTCCCTCCATGGACCCTCTTCCCATCTGTTGAACCTGATCCTGGAGGCCAGAGAGGCAATTTT
TCATTCTTGCCTTCAGCCTCTTCTTCCTCAGAGGAGGCTGTGATGGCATCTGGATCTAGTAGTGGGGACCATAATCAGCCATATTCTAGGTCATT
GTTGATGGAGGTTTCCAGCGAGGACATTAATGGTTGGCGTGCTTTAGCTGCTGGCATTGAGGGGAGGCACAGGATCGTGTCTGAGATTCGTCAAG
TGCTGACTG
GCGTCTGATGTTAGGCATTCTAATGCTCACTCTACGAACCACCAATCAAGACTTATCTCATCAACTGAATCGCCTGAACTGAGAACTCCGTTTTC
TCGTCCACTGAATTTAAACAGTAACCCAAGTCAGTCTCCTTTCATGCATGTGCATGGTTTGGCAAGAAATATGCTTCCGATTTCTTGGAGTGGAT
CTCTTAACTCAAGAGGTGGTGCTTCATCCAGTCCTATTTTGTTTTCAGGGGAAAGAGGTGCTGCAGTAAGGGATGAAGCCAATTTCAGAGGCTCG
CTAAGCAACAACCCAGAGCATCCTAGTTTTGTTGCTGCTCGTGAGAGCAGGCACATGGTACAAGAACCAACAGCTTGGAGTTTTTCACCTGGAAA
TACTGGCTCTTCAAGAAATGTTCCTTCTAGTTCTCGATATACTCCTAATTCTGGTACAGGACCTCTCCCAACTGTCTGGATGCCTCATCAAAATG
TAGCAGCACATAATCAGCAGAGGTTGTCCGAATTCCCTCCATGGACCCTCTTCCCATCTGTTGAACCTGATCCTGGAGGCCAGAGAGGCAATTTT
TCATTCTTGCCTTCAGCCTCTTCTTCCTCAGAGGAGGCTGTGATGGCATCTGGATCTAGTAGTGGGGACCATAATCAGCCATATTCTAGGTCATT
GTTGATGGAGGTTTCCAGCGAGGACATTAATGGTTGGCGTGCTTTAGCTGCTGGCATTGAGGGGAGGCACAGGATCGTGTCTGAGATTCGTCAAG
TGCTGACTG
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E669542] | SGN-U627149 | Coffea canephora | Build 3 | 1 ESTs assembled | |
| [SGN-E669542] | SGN-U636899 | Coffee species | Build 1 | 4 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T482072 [Download][View] | Facility Assigned ID: cccs46w22h23.i |
| Submitter: None | Sequencing Facility: Cornell |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.000 | Expected Error Rate: 0.0000 | Quality Trim Threshold: 15 |
Working
