EST details — SGN-E539340
| Search information |
| Request: 539340 | Match: SGN-E539340 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189917 | Clone name: TUS-59-A19 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C70290 [cLER-14-D16] | Trace: SGN-T94954 | EST: SGN-E281695 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189917 [TUS-59-A19] | Trace: SGN-T340213 | EST: SGN-E539338 | Direction: 3' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E539340 | Length: 729 bp (904 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E539340 [] (trimmed)
TTTTTTTAATCAAATAAATGAAAATTACATGACTGGATAGAATCAGTCCAATAATTCTATGTTGTTCTCAATCACGCAAGTCTTCCTAGACAACT
GAGTGCATTTTTTTCCTTAACATACCAAGTTCAGCCAAGTAATTAATTTAAAATTAACAAAAGCGATGAAACCACAAAAACAAAATACTAGAAAT
TTATTAATAAGCTGGAAGAGTGTCACAATATCATCGTCTAACGTAGCTGCCAAATTTAAATCATGATATATAAAGAGCAGCAAAAACAACAGCTC
CAGCAAGCTTTTCAGAAATGAACCATTAACAAAAATATGTCACCACTCCCAGCTCTTCCAATCAGCATCTTAAGCTTCAGCAAATCCCAATTCAG
AAAGCTTCAAGTGAGCCTCAGCATAGTCAGCAAAGAAGGCATCTTCATCCGCAGCATATTTCTCAACAAGGGGACGGAAAGCAGGATCACAAAGG
AGAGCCTTGTCTGACGGCAACTGTAAGAGCCCCTCTTTTTCCCCACTCAAAAGCTCCGTGAAGTATGAATTGTCAAAGATAAGGGGATTGGCAGT
CCAAGGTCCTTCAAAACCAGAACGCTCCTTGTGTGCCCTTCCCAAGGTATGGGCACCAGAGAGTGCAACAATATCCTGGTCAGAAAGACCCATTT
TGTTCTTGAACACGTCTCTCAAGTGGTCACAGCCCTTGGTGGGCATCGGCAAGCGACCTTCCAC
GAGTGCATTTTTTTCCTTAACATACCAAGTTCAGCCAAGTAATTAATTTAAAATTAACAAAAGCGATGAAACCACAAAAACAAAATACTAGAAAT
TTATTAATAAGCTGGAAGAGTGTCACAATATCATCGTCTAACGTAGCTGCCAAATTTAAATCATGATATATAAAGAGCAGCAAAAACAACAGCTC
CAGCAAGCTTTTCAGAAATGAACCATTAACAAAAATATGTCACCACTCCCAGCTCTTCCAATCAGCATCTTAAGCTTCAGCAAATCCCAATTCAG
AAAGCTTCAAGTGAGCCTCAGCATAGTCAGCAAAGAAGGCATCTTCATCCGCAGCATATTTCTCAACAAGGGGACGGAAAGCAGGATCACAAAGG
AGAGCCTTGTCTGACGGCAACTGTAAGAGCCCCTCTTTTTCCCCACTCAAAAGCTCCGTGAAGTATGAATTGTCAAAGATAAGGGGATTGGCAGT
CCAAGGTCCTTCAAAACCAGAACGCTCCTTGTGTGCCCTTCCCAAGGTATGGGCACCAGAGAGTGCAACAATATCCTGGTCAGAAAGACCCATTT
TGTTCTTGAACACGTCTCTCAAGTGGTCACAGCCCTTGGTGGGCATCGGCAAGCGACCTTCCAC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E539340] | SGN-U593676 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T340215 [Download][View] | Facility Assigned ID: TUS59A19_Q1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.962 | Expected Error Rate: 0.0043 | Quality Trim Threshold: 14.5 |
Working
