EST details — SGN-E538379
| Search information |
| Request: 538379 | Match: SGN-E538379 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C189338 | Clone name: TUS-57-I16 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C65003 [cLEM-8-A19] | Trace: SGN-T85475 | EST: SGN-E271924 | Direction: 5' | Facility: TIGR |
| Clone: SGN-C189338 [TUS-57-I16] | Trace: SGN-T339255 | EST: SGN-E538380 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E538379 | Length: 777 bp (905 bp untrimmed) |
| Status: Current Version | Direction: 3' [See links to 5' reads above] |
>SGN-E538379 [] (trimmed)
AATGGCTGGTAAAAAGCTCACGTATATCATTAATATTAATAATAATAAGAATGGCGATTACTACTTGAATTACATATTTTATATATCTAATAAAT
AAAAGTAGGGGCCTTGAATTTTCCAGGCTAAAAACAAGAGCTTCATTGGTATAGGGGTGGAGTCACCCTTGTTTCTATCCCATCCATAGCTTCAG
AACTCTATCTTTACCACCAGATGCTACTTTTTCGCCGTCTGGACTCCAGTCGACCGCGAAAACCTCGTCAGCATGGCCGGGAAGGTCTTGTTTCA
ATTTTTTTGTCCGGATATCCCAAACCTTCAAGGTTGAATCTTTGCTCCCACTCAAAAGTAGCCTACTGTCGGCTGACCAGCTGTGCAAAACACAA
GGATAGTAACTAACAGTTGACTGTTGAAGTAATGGAAGATTTGAGTTTTATGGCAAATTTTAACCTTATCTGATAAACAGGTCCAACATGGCCTC
GGAATGCAGCAACAAATTTTCCTGTGGTTCCATTCCATAATTTTACTGACTTATCGAATGAAGCACTTGCTATCCATTGACCATCCGGAGAAAAA
TAAACGTGATTAACCAGCTGTTGATGACCTGTCATGCGAGTTTTTGGGTGCTTGCTGACAGCAGGCTCCCATAGAAACATTGTGAAATCATCTGA
TCCTGATACCAACCTCTCAGGGGCATTACCTCTCATTTTGTTGTACCTTTCAAGTGCTACCTTTTTCATTTCCTCANGAGATGCGAAGTGTTTAT
TAGTGTGATCAAAAGCT
AAAAGTAGGGGCCTTGAATTTTCCAGGCTAAAAACAAGAGCTTCATTGGTATAGGGGTGGAGTCACCCTTGTTTCTATCCCATCCATAGCTTCAG
AACTCTATCTTTACCACCAGATGCTACTTTTTCGCCGTCTGGACTCCAGTCGACCGCGAAAACCTCGTCAGCATGGCCGGGAAGGTCTTGTTTCA
ATTTTTTTGTCCGGATATCCCAAACCTTCAAGGTTGAATCTTTGCTCCCACTCAAAAGTAGCCTACTGTCGGCTGACCAGCTGTGCAAAACACAA
GGATAGTAACTAACAGTTGACTGTTGAAGTAATGGAAGATTTGAGTTTTATGGCAAATTTTAACCTTATCTGATAAACAGGTCCAACATGGCCTC
GGAATGCAGCAACAAATTTTCCTGTGGTTCCATTCCATAATTTTACTGACTTATCGAATGAAGCACTTGCTATCCATTGACCATCCGGAGAAAAA
TAAACGTGATTAACCAGCTGTTGATGACCTGTCATGCGAGTTTTTGGGTGCTTGCTGACAGCAGGCTCCCATAGAAACATTGTGAAATCATCTGA
TCCTGATACCAACCTCTCAGGGGCATTACCTCTCATTTTGTTGTACCTTTCAAGTGCTACCTTTTTCATTTCCTCANGAGATGCGAAGTGTTTAT
TAGTGTGATCAAAAGCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E538379] | SGN-U568855 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T339254 [Download][View] | Facility Assigned ID: TUS57I16_P1 |
| Submitter: Koni | Sequencing Facility: INRA (MWG) |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.984 | Expected Error Rate: 0.0087 | Quality Trim Threshold: 14.5 |
Working
