EST details — SGN-E396772

Search information 
Request: 396772Match: SGN-E396772
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C183878Clone name: TUS-43-F4
cartOrder Clone
Library Name: TUSOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:

Microarray: SGN-C183878 is on microarray TOM1 spot ID 1-1-5.2.19.17 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C7258 [cLEC-38-G12] Trace: SGN-T31668 EST: SGN-E209133 Direction: 5' Facility: TIGR
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E396772Length: 628 bp (879 bp untrimmed)
Status: Current VersionDirection: 5'
>SGN-E396772 [] (trimmed) GCCAGTGGTGGAGTCTTACAGTGTACCGGATGGGGCAAACCCCCTTACACCGTAGCCGAATACCCCTTGCACCAATTTATCAACTTAAATTTGAG
GAAGATTTCTTCAGGCGATGGATTTGATAATCCATTGACTTTTGCCCCGTCATAACCTATTGGAGGAAAATGTCACGCAATTCATTGCACGGCCG
ATATAAATGGTGAATGTCCGCGCGCCCATAGGGTACCGGGAGGATGTAACGGCCCTTGTACCACGTTTGGAGGACAACAATATTGTTGCACCCAA
GGTCCATGTGGCCCTACATAGTTGTCCAAATTTTTCAAGAAAATATGTCCCGATGCTTATAGCTACCCACAAGACGATCCTACAAGCACATTTAC
TTGCCCTGGTGGTAGTACAAACTATAGGGTTGTCTTTTGTCCTAATGGTGTTGCTGATCCAAATTTCCCCTTGGAGATGCCTGCAAGTACTGATG
AAGTGGCCAAGTGAATTTGAGTTTCTTCATTTTAAATCGCCTCAATTAGTCAACTGATCTCTACCGTAATGAAAAATCTTAATAGCTCAGTTTTT
TTAATATTCCCTTTTACTTTATTGATAAGAGTTCCTACCAACTTTAAAAACCGGAATA
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E396772] SGN-U590493 Tomato 200607 Build 2 1 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T198098 [Download][View] Facility Assigned ID: FA0AAD31DC02RM1
Submitter: Koni Sequencing Facility: INRA
Funding Organization: Funding for 5' and 3' resequencing of TOM1 microarray clones was provided by INRA. Sequencing was performed by Genoscope, Evry cedex, France. \ \ \
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read, incomplete (flanking vector not found)
Passed all screens and filters
Sequence Entropy: 0.980 Expected Error Rate: 0.0219 Quality Trim Threshold: 14.5