EST details — SGN-E378767
| Search information |
| Request: 378767 | Match: SGN-E378767 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C178694 | Clone name: TUS-29-N4 |
| ||
| Library Name: TUS | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: Rearrayed collection of L. esculentum cDNA clones
Development Stage:
Microarray: SGN-C178694 is on microarray TOM1 spot ID 1-1-5.2.4.16 [Order] [Tomato Microarray Database]
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C178694 [TUS-29-N4] | Trace: SGN-T184226 | EST: SGN-E371459 | Direction: 3' | Facility: INRA |
| Clone: SGN-C178694 [TUS-29-N4] | Trace: SGN-T184227 | EST: SGN-E371460 | Direction: 5' | Facility: INRA |
| Sequence |
| Sequence Id: SGN-E378767 | Length: 683 bp (1183 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E378767 [] (trimmed)
GTTGGAAAATTTTTTTTTCCAATTTAATACGGACCTCTTTATAAAAGTAAAAAAAATTGTTGGCAAAAAATTCATTTTTGAACTGATTAAGGCAA
TCAAAACAAACCCAAATCAAACTTTGTTTCCTCAAACTAAACTTCATAAATCACAAACACTTTTTCTAAAGCAAATATATGTGGCATCACTTATC
CCCATTTGCATCCCCTCAGAATTAGTGGGAAAATTGCTGCAAAAAGGGCCCCTGGGAAAGGCCCCCCAAAAAAAACCCCAGGGCCCCCCCAGGCT
ATTTGTTGATTGAAAATGACACCACCTCCAAAACTTCTAGCAGGGTTGACCCCTGTGCCAGAAATTGGGATTGGGGCCAAGGGGACCAAAAACAC
ACCAAATCCAATTGGTAGAGGGCCCAACACAGGAACATGGGAGTCTCTACCATCCCTCTTAAAGCCAGGGGCCAATAAAACCGGGAAAACAAAAA
CAAATGTTCCAATCATCTCCGCGAACCATGCAACCCCCCTAGTATAGCCGGGGCTGACCAATTTAACCCCCCCCCCGAAAAGTTCAAACTTAAAT
TTATAAAGGGCCTTAACTAGAGCAGTACCACAAAGGGCTCCCAAATATTGAACTACAATGTACAATAACCCTCTTATTAAAAATATTTTCCTTGA
AAGGAATACCCCAAAGGC
TCAAAACAAACCCAAATCAAACTTTGTTTCCTCAAACTAAACTTCATAAATCACAAACACTTTTTCTAAAGCAAATATATGTGGCATCACTTATC
CCCATTTGCATCCCCTCAGAATTAGTGGGAAAATTGCTGCAAAAAGGGCCCCTGGGAAAGGCCCCCCAAAAAAAACCCCAGGGCCCCCCCAGGCT
ATTTGTTGATTGAAAATGACACCACCTCCAAAACTTCTAGCAGGGTTGACCCCTGTGCCAGAAATTGGGATTGGGGCCAAGGGGACCAAAAACAC
ACCAAATCCAATTGGTAGAGGGCCCAACACAGGAACATGGGAGTCTCTACCATCCCTCTTAAAGCCAGGGGCCAATAAAACCGGGAAAACAAAAA
CAAATGTTCCAATCATCTCCGCGAACCATGCAACCCCCCTAGTATAGCCGGGGCTGACCAATTTAACCCCCCCCCCGAAAAGTTCAAACTTAAAT
TTATAAAGGGCCTTAACTAGAGCAGTACCACAAAGGGCTCCCAAATATTGAACTACAATGTACAATAACCCTCTTATTAAAAATATTTTCCTTGA
AAGGAATACCCCAAAGGC
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E378767] | SGN-U592917 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T1508 [Download][View] | Facility Assigned ID: TUS29N4.ab1 |
| Submitter: Koni | Sequencing Facility: Giov. Lab |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.926 | Expected Error Rate: 0.0264 | Quality Trim Threshold: 14.5 |
Working
