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EST details — SGN-E343856

Search information 
Request: 343856Match: SGN-E343856
Request From: web userMatch Type: EST sequence internal identifier
Clone information 
SGN ID: SGN-C140363Clone name: cTOF-12-B17
cartOrder Clone
Library Name: cTOFOrganism: Solanum lycopersicum (formerly Lycopersicon esculentum)

Tissue: shoot
Development Stage: developing shoots from 4-6wks old plants

Microarray: Alias clone SGN-C181829 is on microarray TOM1: SGN-S1-1-6.4.12.12
There is no map position defined on SGN for this EST or others in the same unigene.
Additional sequencing 
Clone: SGN-C181829 [TUS-37-P19] Trace: SGN-T194069 EST: SGN-E392743 Direction: 3' Facility: INRA
Clone: SGN-C181829 [TUS-37-P19] Trace: SGN-T194070 EST: SGN-E392744 Direction: 5' Facility: INRA
[Show information hierarchy]
Sequence 
Sequence Id: SGN-E343856Length: 604 bp (875 bp untrimmed)
Status: Current VersionDirection: 5' [See links to 3' reads above]
>SGN-E343856 [] (trimmed) GAGAAAATGGGGCTCTTGGCCTCCAGTCTCGAGCGCATCCACGTGAAATAATGACCTGAAGTTTTGAAAGCTCTGCAAGAACTGAATGTATGTTG
GAAAAAGCTTGGTCAGTATAACATGAAATGTCGATGGGTTCCTAGCTTACCTGGTCATCATGAAGGCATGGGTGTTAATTCCATGCATGGGAATC
AGTTCTTTGGAGATGATTCATCCATCATTGAGAATGATGGGGCCACAAAGTTAACAAATGTGGTCAAGTTTGAAGTTCAGCTTTACAAAACCAGG
GAGGAGAAGTACTTGCTTGACCTTCAGAGACTTCAGGGTCCACAATTCCTCTTCCTGGATCTCTGTGCTGCTTTTCTTGCTCAGCTTCGAGTACT
TTAAAGTCTCCGAAATAAGGAGCTAAGTTGGAAAAAGCCCATGCTTGTATATAATTGGTATACCAGCTCAGTTACTGCATTTTGTCTTGTTAACA
AATTCCACCCTGCTTGGTCAGAGGTGCCTAGCAACTCTTTTTTTCTTTTGATTCGCTAGGAGATCTAGCTCACTCTCTTTTNTAACGTTTATGGA
ATTTCAGTTACCTACAGTATCTACTTACAGATTG
[BLAST]  [AA Translate]
Unigenes 
Current Unigene builds
[SGN-E343856] SGN-U564382 Tomato 200607 Build 2 10 ESTs assembled
Follow SGN-U# link for detailed information and annotations
Chromatogram 
SGN-ID: SGN-T155813 [Download][View] Facility Assigned ID: TOFBU09TH
Submitter: Koni Sequencing Facility: TIGR
Funding Organization: National Science Foundation
Quality processing 
Processed By: SGN Basecalling Software: phred
Vector Signature: 5' sequence read -- flanking 3' vector arm detected.
Passed all screens and filters
Sequence Entropy: 0.976 Expected Error Rate: 0.0089 Quality Trim Threshold: 12.5