EST details — SGN-E300176
| Search information |
| Request: 300176 | Match: SGN-E300176 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C89433 | Clone name: cLEW-17-E1 |
| ||
| Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
No additional reads found.[Show information hierarchy]
| Sequence |
| Sequence Id: SGN-E300176 | Length: 385 bp (973 bp untrimmed) |
| Status: Current Version | Direction: 5' |
>SGN-E300176 [] (trimmed)
GCTGCCCGAATTCGGGGAATGCAACGAAATCTTTATGTCATTTTATAGGACTACTATGTTGAACCTGCTGAGAGCAAGATGCCTTACCGTGCTGT
CTTGGACCTCTGCCTCTTAAGAACTACTACAGGGAACCGAGTGTTTGGTGCTCTCAATGGTGCATTGGATGGAGGGATTGACATCCCTCATATCG
AGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCTATGCATAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATG
AATACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAAGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTA
CAAAA
CTTGGACCTCTGCCTCTTAAGAACTACTACAGGGAACCGAGTGTTTGGTGCTCTCAATGGTGCATTGGATGGAGGGATTGACATCCCTCATATCG
AGAAGAGGTTTGCTGGATACAGCAAGGACTCTAAGCAACTCTATGCATAAGTTCACCGCAAGTATATCTATGGTGGCCACGTTGCTGCTTATATG
AATACTTTGATGGAAGATGAACCTGAGAAATATCAGACACACTTCAGCTTATACATCAAAGCGGGTCTTGAGGCAGACAATCTTGAGGAGATGTA
CAAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E300176] | SGN-U590660 | Tomato 200607 | Build 2 | 1 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T113224 [Download][View] | Facility Assigned ID: TRDCM25TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.970 | Expected Error Rate: 0.0185 | Quality Trim Threshold: 20.5 |
Working
