EST details — SGN-E299935
| Search information |
| Request: 299935 | Match: SGN-E299935 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C89032 | Clone name: cLEW-11-G3 |
| ||
| Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C191538 [TUS-63-E8] | Trace: SGN-T342997 | EST: SGN-E542122 | Direction: 3' | Facility: INRA (MWG) |
| Clone: SGN-C191538 [TUS-63-E8] | Trace: SGN-T349537 | EST: SGN-E548662 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E299935 | Length: 513 bp (915 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E299935 [] (trimmed)
GAAGCTTAGGATTAAAGAACTAGGTGGTGGTTCTCGTGATTTTAAAAAGAATGCATCATCCAGGGATAAGTGAGTGCCGCTAGTATGTTGATGTG
ATACTACTCAAGTGCTCTGATTTTGAAGTTACCCATTTCACAGAATTTATTTGTTGTTAACGCAGTCTAATAATTCTATTAATAGGTGCTTGTAA
CAATGTGCTAGATCTCGTGCATAGATTTCTATTATGCACTTTTATTGCATCAGTTAAGTGGAAAATATTTTGTGCATATTTTTTCCTTGGGAAGA
TGGTTGTGCTCTCTCTTGTAGAATTATACTGAGTGCATCTGTGAAGGGATTTGAGAATTAGCCTGTTCTGAATTATTCTTTTGATGCTTTTGTTA
GAGAAAGATGATGTAGTTGGACAAAGAGAAGTGGTTCTCTTTGTACTGGTGTAATGGTGCATCATTTTAGGCGAAGTTTATATTATGTTTTGGTT
TTGAAGCTCATGGTTTGTCTTACCGTCTATCTGATCCT
ATACTACTCAAGTGCTCTGATTTTGAAGTTACCCATTTCACAGAATTTATTTGTTGTTAACGCAGTCTAATAATTCTATTAATAGGTGCTTGTAA
CAATGTGCTAGATCTCGTGCATAGATTTCTATTATGCACTTTTATTGCATCAGTTAAGTGGAAAATATTTTGTGCATATTTTTTCCTTGGGAAGA
TGGTTGTGCTCTCTCTTGTAGAATTATACTGAGTGCATCTGTGAAGGGATTTGAGAATTAGCCTGTTCTGAATTATTCTTTTGATGCTTTTGTTA
GAGAAAGATGATGTAGTTGGACAAAGAGAAGTGGTTCTCTTTGTACTGGTGTAATGGTGCATCATTTTAGGCGAAGTTTATATTATGTTTTGGTT
TTGAAGCTCATGGTTTGTCTTACCGTCTATCTGATCCT
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E299935] | SGN-U569031 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T112775 [Download][View] | Facility Assigned ID: TRDBO38TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.941 | Expected Error Rate: 0.0044 | Quality Trim Threshold: 14.5 |
Working
