EST details — SGN-E297048
| Search information |
| Request: 297048 | Match: SGN-E297048 |
| Request From: web user | Match Type: EST sequence internal identifier |
| Clone information |
| SGN ID: SGN-C91635 | Clone name: cLEW-7-N3 |
| ||
| Library Name: cLEW | Organism: Solanum lycopersicum (formerly Lycopersicon esculentum) |
Tissue: mixed roots grown under different nutrient and mineral difficiencies
Development Stage: 4-8 weeks
Microarray: This clone is not found on any microarray
There is no map position defined on SGN for this EST or others in the same unigene.
| Additional sequencing |
| Clone: SGN-C191389 [TUS-62-O3] | Trace: SGN-T342741 | EST: SGN-E541866 | Direction: 3' | Facility: INRA (MWG) |
| Clone: SGN-C191389 [TUS-62-O3] | Trace: SGN-T349495 | EST: SGN-E548620 | Direction: 5' | Facility: INRA (MWG) |
| Sequence |
| Sequence Id: SGN-E297048 | Length: 481 bp (892 bp untrimmed) |
| Status: Current Version | Direction: 5' [See links to 3' reads above] |
>SGN-E297048 [] (trimmed)
GGTGAACTTATATTAAGCATTATTTCATCATGGGATGGGCAAAATATGCCAGAGGAAAGCTATCTTTGCCTGTAATAACAGGAATTTTCTGTGCA
CTAACATTCATTGTTTTATTGTACACTGAAAGGATCACTACTTCTTCTTCTGGTTTCCATTTCGGGATCAAAACTTGTCCGAGACGAAATGCTGC
AAAGTTAAAAAAACATCATACAGGTGTTATTAGAAAGTTGAAGAGCACTCCACTATACAATCCAACAGATGATAGGTTCGTGTTTGATCCCAAGG
AATGCAACCTCAATAACGGGAAATGGGTGTTTAATACTACTATTAAGCCACTATACACAGATCGAACTTGTTCATATATTGACAGACAATATTCT
TGCACTAAGAATGGTCTAGACGATTCAGATTATCTTCACTGGGAATGGCCGCCTGATGACTGCATCTTGCCAAGGTTTGATCCGACGATTGCCCT
TATAAA
CTAACATTCATTGTTTTATTGTACACTGAAAGGATCACTACTTCTTCTTCTGGTTTCCATTTCGGGATCAAAACTTGTCCGAGACGAAATGCTGC
AAAGTTAAAAAAACATCATACAGGTGTTATTAGAAAGTTGAAGAGCACTCCACTATACAATCCAACAGATGATAGGTTCGTGTTTGATCCCAAGG
AATGCAACCTCAATAACGGGAAATGGGTGTTTAATACTACTATTAAGCCACTATACACAGATCGAACTTGTTCATATATTGACAGACAATATTCT
TGCACTAAGAATGGTCTAGACGATTCAGATTATCTTCACTGGGAATGGCCGCCTGATGACTGCATCTTGCCAAGGTTTGATCCGACGATTGCCCT
TATAAA
| Unigenes |
| Current Unigene builds | |||||
| [SGN-E297048] | SGN-U566241 | Tomato 200607 | Build 2 | 2 ESTs assembled | |
| Follow SGN-U# link for detailed information and annotations | |||||
| Chromatogram |
| SGN-ID: SGN-T112275 [Download][View] | Facility Assigned ID: TRDBA74TH |
| Submitter: Koni | Sequencing Facility: TIGR |
| Quality processing |
| Processed By: SGN | Basecalling Software: phred |
Passed all screens and filters
| Sequence Entropy: 0.958 | Expected Error Rate: 0.0249 | Quality Trim Threshold: 14.5 |
Working
